| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BW25113 | 1.0 | b0945 | pyrD | dihydroorotate dehydrogenase (NCBI) | 1.0 | b4005 | purD | phosphoribosylamine--glycine ligase (NCBI) | 0.90 | 8 |
| Escherichia coli BL21 | 1.00 | ECD_00949 | | dihydro-orotate oxidase, FMN-linked | 0.98 | ECD_03882 | | phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase | 0.79 | 8 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_21850 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.99 | NOLOHH_05460 | purD | Phosphoribosylamine--glycine ligase | 0.94 | 7 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_22440 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.98 | KEDOAH_14845 | purD | Phosphoribosylamine--glycine ligase | — | — |
| Escherichia coli ECRC101 | 1.00 | MCAODC_24685 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.98 | MCAODC_03815 | purD | Phosphoribosylamine--glycine ligase | low | > 87 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_03015 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.98 | NIAGMN_11065 | purD | Phosphoribosylamine--glycine ligase | — | — |
| Escherichia coli ECRC62 | 1.00 | BNILDI_20015 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.99 | BNILDI_06060 | purD | Phosphoribosylamine--glycine ligase | 0.92 | 13 |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_08905 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.98 | JDDGAC_16940 | purD | Phosphoribosylamine--glycine ligase | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_02721 | | Dihydroorotate dehydrogenase (quinone) | 0.99 | OHPLBJKB_04044 | | Phosphoribosylamine--glycine ligase | 0.64 | 8 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_05295 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.98 | OKFHMN_13315 | purD | Phosphoribosylamine--glycine ligase | 0.86 | 25 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_23225 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.98 | HEPCGN_11955 | purD | Phosphoribosylamine--glycine ligase | 0.92 | 4 |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS04965 | | quinone-dependent dihydroorotate dehydrogenase | 0.98 | ECOLIN_RS23095 | | phosphoribosylamine--glycine ligase | — | — |
| Escherichia fergusonii Becca | 0.99 | EFB2_03126 | | Dihydroorotate dehydrogenase (quinone) | 0.98 | EFB2_04605 | | Phosphoribosylamine--glycine ligase | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.96 | GFF3236 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | 0.93 | GFF4187 | | Phosphoribosylamine--glycine ligase (EC 6.3.4.13) | low | > 78 |
| Enterobacter sp. TBS_079 | 0.94 | MPMX20_01596 | | Dihydroorotate dehydrogenase (quinone) | 0.92 | MPMX20_00225 | | Phosphoribosylamine--glycine ligase | 0.85 | 15 |
| Enterobacter asburiae PDN3 | 0.94 | EX28DRAFT_1998 | | dihydroorotate oxidase A (EC 1.3.3.1) | 0.92 | EX28DRAFT_4544 | | phosphoribosylamine--glycine ligase (EC 6.3.4.13) | — | — |
| Klebsiella michiganensis M5al | 0.93 | BWI76_RS09910 | | dihydroorotate dehydrogenase (quinone) | 0.92 | BWI76_RS01610 | | phosphoribosylamine--glycine ligase | 0.66 | 12 |
| Serratia liquefaciens MT49 | 0.87 | IAI46_08805 | | quinone-dependent dihydroorotate dehydrogenase | 0.81 | IAI46_01360 | | phosphoribosylamine--glycine ligase | low | > 86 |
| Rahnella sp. WP5 | 0.86 | EX31_RS18095 | | quinone-dependent dihydroorotate dehydrogenase | 0.82 | EX31_RS16855 | | phosphoribosylamine--glycine ligase | 0.93 | 25 |
| Dickeya dianthicola ME23 | 0.86 | DZA65_RS13390 | | quinone-dependent dihydroorotate dehydrogenase | 0.83 | DZA65_RS01255 | | phosphoribosylamine--glycine ligase | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.86 | HER17_RS12005 | | quinone-dependent dihydroorotate dehydrogenase | 0.82 | HER17_RS20340 | | phosphoribosylamine--glycine ligase | 0.92 | 48 |
| Dickeya dadantii 3937 | 0.86 | DDA3937_RS12855 | | quinone-dependent dihydroorotate dehydrogenase | 0.83 | DDA3937_RS01215 | | phosphoribosylamine--glycine ligase | 0.76 | 10 |
| Dickeya dianthicola 67-19 | 0.85 | HGI48_RS12925 | | quinone-dependent dihydroorotate dehydrogenase | 0.83 | HGI48_RS01210 | | phosphoribosylamine--glycine ligase | 0.86 | 4 |
| Erwinia tracheiphila SCR3 | 0.84 | LU632_RS09955 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.81 | LU632_RS01015 | purD | phosphoribosylamine--glycine ligase | 0.90 | 11 |
| Pantoea sp. MT58 | 0.81 | IAI47_12705 | | quinone-dependent dihydroorotate dehydrogenase | 0.84 | IAI47_18045 | | phosphoribosylamine--glycine ligase | 0.97 | 7 |
| Vibrio cholerae E7946 ATCC 55056 | 0.72 | CSW01_07490 | | dihydroorotate dehydrogenase (quinone) | 0.79 | CSW01_01415 | | phosphoribosylamine--glycine ligase | 0.39 | 59 |
| Shewanella sp. ANA-3 | 0.63 | Shewana3_1786 | | dihydroorotate dehydrogenase 2 (RefSeq) | 0.70 | Shewana3_0440 | | phosphoribosylamine--glycine ligase (RefSeq) | 0.83 | 53 |
| Shewanella loihica PV-4 | 0.63 | Shew_1810 | | dihydroorotate dehydrogenase 2 (RefSeq) | 0.67 | Shew_3413 | | phosphoribosylamine--glycine ligase (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.62 | Sama_1593 | | dihydroorotate dehydrogenase 2 (RefSeq) | 0.71 | Sama_0394 | | phosphoribosylamine--glycine ligase (RefSeq) | 0.64 | 25 |
| Shewanella oneidensis MR-1 | 0.62 | SO2592 | pyrD | dihydroorotate dehydrogenase (NCBI ptt file) | 0.68 | SO0441 | purD | phosphoribosylamine--glycine ligase (NCBI ptt file) | 0.87 | 22 |
| Alteromonas macleodii MIT1002 | 0.58 | MIT1002_02035 | | Dihydroorotate dehydrogenase (quinone) | 0.72 | MIT1002_03961 | | Phosphoribosylamine--glycine ligase | low | > 70 |
| Pseudomonas fluorescens SBW25 | 0.57 | PFLU_RS22550 | | quinone-dependent dihydroorotate dehydrogenase | 0.73 | PFLU_RS03010 | | phosphoribosylamine--glycine ligase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.57 | PFLU_RS22550 | | quinone-dependent dihydroorotate dehydrogenase | 0.73 | PFLU_RS03010 | | phosphoribosylamine--glycine ligase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.57 | Pf1N1B4_3842 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | 0.73 | Pf1N1B4_1316 | | Phosphoribosylamine--glycine ligase (EC 6.3.4.13) | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.57 | QEN71_RS22765 | | quinone-dependent dihydroorotate dehydrogenase | 0.58 | QEN71_RS24400 | | phosphoribosylamine--glycine ligase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.57 | AO353_00780 | | dihydroorotate dehydrogenase (quinone) | 0.73 | AO353_13645 | | phosphoribosylamine--glycine ligase | — | — |
| Burkholderia phytofirmans PsJN | 0.57 | BPHYT_RS08565 | | dihydroorotate dehydrogenase | 0.59 | BPHYT_RS06405 | | phosphoribosylamine--glycine ligase | 0.73 | 7 |
| Pseudomonas simiae WCS417 | 0.57 | PS417_20935 | | dihydroorotate dehydrogenase | 0.72 | PS417_02935 | | phosphoribosylamine--glycine ligase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.57 | Psyr_2106 | | dihydroorotate oxidase A | 0.73 | Psyr_4407 | | phosphoribosylamine--glycine ligase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.57 | Psyr_2106 | | dihydroorotate oxidase A | 0.73 | Psyr_4407 | | phosphoribosylamine--glycine ligase | — | — |
| Paraburkholderia graminis OAS925 | 0.56 | ABIE53_001954 | | dihydroorotate dehydrogenase | 0.59 | ABIE53_001545 | | phosphoribosylamine--glycine ligase | — | — |
| Pseudomonas sp. RS175 | 0.56 | PFR28_01054 | | Dihydroorotate dehydrogenase (quinone) | 0.73 | PFR28_05213 | | Phosphoribosylamine--glycine ligase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.56 | Pf6N2E2_2347 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | 0.73 | Pf6N2E2_3520 | | Phosphoribosylamine--glycine ligase (EC 6.3.4.13) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.56 | PfGW456L13_4095 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | 0.72 | PfGW456L13_58 | | Phosphoribosylamine--glycine ligase (EC 6.3.4.13) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.56 | AO356_02610 | | dihydroorotate dehydrogenase (quinone) | 0.73 | AO356_08230 | | phosphoribosylamine--glycine ligase | — | — |
| Pseudomonas sp. S08-1 | 0.55 | OH686_03120 | | dihydroorotate dehydrogenase (fumarate) | 0.72 | OH686_07625 | | Phosphoribosylamine--glycine ligase | — | — |
| Dechlorosoma suillum PS | 0.55 | Dsui_2978 | | dihydroorotate dehydrogenase, subfamily 2 | 0.62 | Dsui_1596 | | phosphoribosylamine--glycine ligase | — | — |
| Kangiella aquimarina DSM 16071 | 0.55 | B158DRAFT_2228 | | dihydroorotate oxidase A (EC 1.3.3.1) | 0.71 | B158DRAFT_0167 | | phosphoribosylamine--glycine ligase (EC 6.3.4.13) | — | — |
| Pseudomonas stutzeri RCH2 | 0.55 | Psest_1947 | | dihydroorotate dehydrogenase, subfamily 2 | 0.73 | Psest_1013 | | phosphoribosylamine--glycine ligase | 0.65 | 7 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.55 | H281DRAFT_00743 | | dihydroorotate oxidase A | 0.59 | H281DRAFT_04521 | | phosphoribosylamine--glycine ligase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.54 | ABZR87_RS13360 | | quinone-dependent dihydroorotate dehydrogenase | 0.58 | ABZR87_RS15410 | | phosphoribosylamine--glycine ligase | — | — |
| Pseudomonas putida KT2440 | 0.54 | PP_2095 | | Dihydroorotate dehydrogenase (quinone) | 0.74 | PP_4823 | | Phosphoribosylamine--glycine ligase | — | — |
| Ralstonia solanacearum UW163 | 0.54 | UW163_RS14880 | | quinone-dependent dihydroorotate dehydrogenase | 0.57 | UW163_RS10125 | | phosphoribosylamine--glycine ligase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.54 | RALBFv3_RS01570 | | quinone-dependent dihydroorotate dehydrogenase | 0.57 | RALBFv3_RS03545 | | phosphoribosylamine--glycine ligase | — | — |
| Ralstonia solanacearum PSI07 | 0.53 | RPSI07_RS15920 | | quinone-dependent dihydroorotate dehydrogenase | 0.58 | RPSI07_RS13680 | | phosphoribosylamine--glycine ligase | — | — |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS08160 | | dihydroorotate dehydrogenase (quinone) | 0.58 | RS_RS10995 | | phosphoribosylamine--glycine ligase | — | — |
| Acinetobacter radioresistens SK82 | 0.53 | MPMX26_01120 | | Dihydroorotate dehydrogenase (quinone) | 0.64 | MPMX26_01140 | | Phosphoribosylamine--glycine ligase | 0.79 | 25 |
| Herbaspirillum seropedicae SmR1 | 0.52 | HSERO_RS16155 | | dihydroorotate dehydrogenase | 0.60 | HSERO_RS17755 | | phosphoribosylamine--glycine ligase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.51 | RR42_RS07465 | | dihydroorotate dehydrogenase | 0.56 | RR42_RS04730 | | phosphoribosylamine--glycine ligase | — | — |
| Acidovorax sp. GW101-3H11 | 0.51 | Ac3H11_4100 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | 0.58 | Ac3H11_2421 | | Phosphoribosylamine--glycine ligase (EC 6.3.4.13) | — | — |
| Castellaniella sp019104865 MT123 | 0.50 | ABCV34_RS07790 | | quinone-dependent dihydroorotate dehydrogenase | 0.57 | ABCV34_RS02550 | | phosphoribosylamine--glycine ligase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.50 | ABZR86_RS07450 | | quinone-dependent dihydroorotate dehydrogenase | 0.64 | ABZR86_RS13850 | | phosphoribosylamine--glycine ligase | — | — |
| Rhodanobacter denitrificans MT42 | 0.50 | LRK55_RS15740 | | quinone-dependent dihydroorotate dehydrogenase | 0.63 | LRK55_RS09805 | | phosphoribosylamine--glycine ligase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.49 | LRK54_RS15985 | | quinone-dependent dihydroorotate dehydrogenase | 0.63 | LRK54_RS10165 | | phosphoribosylamine--glycine ligase | — | — |
| Variovorax sp. SCN45 | 0.49 | GFF960 | | Dihydroorotate dehydrogenase (quinone) (EC 1.3.5.2) | 0.56 | GFF302 | | Phosphoribosylamine--glycine ligase (EC 6.3.4.13) | — | — |
| Rhodanobacter sp. FW510-T8 | 0.48 | OKGIIK_09010 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.62 | OKGIIK_13750 | purD | phosphoribosylamine--glycine ligase | — | — |
| Variovorax sp. OAS795 | 0.48 | ABID97_RS14065 | | quinone-dependent dihydroorotate dehydrogenase | 0.56 | ABID97_RS16735 | | phosphoribosylamine--glycine ligase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.47 | GFF4211 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | 0.57 | GFF4524 | | Phosphoribosylamine--glycine ligase (EC 6.3.4.13) | — | — |
| Marinobacter adhaerens HP15 | 0.47 | HP15_1377 | | dihydroorotate dehydrogenase | 0.75 | HP15_3228 | | phosphoribosylamine-glycine ligase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.47 | Xcc-8004.3032.1 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | 0.66 | Xcc-8004.657.1 | | Phosphoribosylamine--glycine ligase (EC 6.3.4.13) | — | — |
| Lysobacter sp. OAE881 | 0.45 | ABIE51_RS13725 | | quinone-dependent dihydroorotate dehydrogenase | 0.63 | ABIE51_RS17770 | | phosphoribosylamine--glycine ligase | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.43 | CA265_RS14005 | | dihydroorotate dehydrogenase (quinone) | 0.39 | CA265_RS22605 | | phosphoribosylamine--glycine ligase | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.42 | Echvi_1806 | | dihydroorotate dehydrogenase, subfamily 2 | 0.44 | Echvi_0167 | | phosphoribosylamine--glycine ligase | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.41 | ABZR88_RS12040 | | quinone-dependent dihydroorotate dehydrogenase | 0.43 | ABZR88_RS01620 | | phosphoribosylamine--glycine ligase | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.41 | CA264_00865 | | dihydroorotate dehydrogenase (quinone) | 0.42 | CA264_20115 | | phosphoribosylamine--glycine ligase | low | > 74 |
| Sinorhizobium meliloti 1021 | 0.40 | SMc02245 | | dihydroorotate dehydrogenase 2 | 0.52 | SMc00993 | | phosphoribosylamine--glycine ligase | 0.91 | 9 |
| Agrobacterium fabrum C58 | 0.40 | Atu0486 | | dihydroorotate dehydrogenase | 0.54 | Atu0647 | | phosphoribosylamine--glycine ligase | 0.89 | 8 |
| Sphingomonas koreensis DSMZ 15582 | 0.39 | Ga0059261_1468 | | dihydroorotate oxidase A (EC 1.3.3.1) | 0.44 | Ga0059261_1441 | | phosphoribosylamine--glycine ligase (EC 6.3.4.13) | — | — |
| Rhizobium sp. OAE497 | 0.38 | ABIE40_RS02420 | | quinone-dependent dihydroorotate dehydrogenase | 0.54 | ABIE40_RS05430 | | phosphoribosylamine--glycine ligase | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.38 | A4249_RS00280 | | quinone-dependent dihydroorotate dehydrogenase | 0.43 | A4249_RS09255 | | phosphoribosylamine--glycine ligase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.37 | TX73_004110 | | quinone-dependent dihydroorotate dehydrogenase | 0.53 | TX73_005965 | | phosphoribosylamine--glycine ligase | — | — |
| Azospirillum sp. SherDot2 | 0.37 | MPMX19_02083 | | Dihydroorotate dehydrogenase (quinone) | 0.53 | MPMX19_01630 | | Phosphoribosylamine--glycine ligase | — | — |
| Azospirillum brasilense Sp245 | 0.36 | AZOBR_RS13520 | | dihydroorotate dehydrogenase | 0.53 | AZOBR_RS04470 | | phosphoribosylamine--glycine ligase | — | — |
| Magnetospirillum magneticum AMB-1 | 0.36 | AMB_RS19685 | | quinone-dependent dihydroorotate dehydrogenase | 0.53 | AMB_RS01075 | | phosphoribosylamine--glycine ligase | — | — |
| Rhodospirillum rubrum S1H | 0.36 | Rru_A0514 | | Dihydroorotate dehydrogenase 2 (NCBI) | 0.48 | Rru_A0646 | | Phosphoribosylamine--glycine ligase (NCBI) | — | — |
| Mycobacterium tuberculosis H37Rv | 0.36 | Rv2139 | | Probable dihydroorotate dehydrogenase PyrD | 0.34 | Rv0772 | | Probable phosphoribosylamine--glycine ligase PurD (GARS) (glycinamide ribonucleotide synthetase) (phosphoribosylglycinamide synthetase) (5'-phosphoribosylglycinamide synthetase) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.33 | PGA1_c12150 | | dihydroorotate dehydrogenase PyrD | 0.47 | PGA1_c23610 | | phosphoribosylamine--glycine ligase PurD | 0.83 | 26 |
| Bosea sp. OAE506 | 0.33 | ABIE41_RS24065 | | quinone-dependent dihydroorotate dehydrogenase | 0.49 | ABIE41_RS23160 | | phosphoribosylamine--glycine ligase | 0.51 | 65 |
| Dinoroseobacter shibae DFL-12 | 0.32 | Dshi_0847 | | Dihydroorotate oxidase (RefSeq) | 0.45 | Dshi_2728 | | phosphoribosylamine--glycine ligase (RefSeq) | 0.82 | 7 |
| Caulobacter crescentus NA1000 Δfur | 0.31 | CCNA_00562 | | dihydroorotate dehydrogenase | 0.43 | CCNA_00299 | | phosphoribosylamine--glycine ligase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.31 | CCNA_00562 | | dihydroorotate dehydrogenase | 0.43 | CCNA_00299 | | phosphoribosylamine--glycine ligase | 0.87 | 30 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.26 | BT1009 | | dihydroorotate dehydrogenase (NCBI ptt file) | 0.43 | BT3253 | | phosphoribosylamine--glycine ligase (NCBI ptt file) | low | > 81 |
| Bifidobacterium breve UCC2003 | 0.22 | BBR_RS12895 | | quinone-dependent dihydroorotate dehydrogenase | 0.42 | BBR_RS13370 | | phosphoribosylamine--glycine ligase | low | > 34 |