Conservation of cofitness between b2616 and b3813 in Escherichia coli BW25113

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2616 recN recombination and repair protein (NCBI) 1.0 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.68 1
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01091 DNA repair protein RecN 1.00 OHPLBJKB_04237 DNA helicase II low > 73
Escherichia coli ECOR27 1.00 NOLOHH_12815 recN DNA repair protein RecN 1.00 NOLOHH_06540 uvrD DNA helicase II low > 57
Escherichia coli ECRC62 1.00 BNILDI_11620 recN DNA repair protein RecN 1.00 BNILDI_04995 uvrD DNA helicase II — —
Escherichia coli BL21 1.00 ECD_02504 recombination and repair protein 1.00 ECD_03689 DNA-dependent ATPase I and helicase II — —
Escherichia coli ECRC101 0.99 MCAODC_11670 recN DNA repair protein RecN 1.00 MCAODC_04915 uvrD DNA helicase II — —
Escherichia coli ECRC99 0.99 KEDOAH_07075 recN DNA repair protein RecN 1.00 KEDOAH_13740 uvrD DNA helicase II — —
Escherichia coli ECRC102 0.99 NIAGMN_18915 recN DNA repair protein RecN 1.00 NIAGMN_12165 uvrD DNA helicase II — —
Escherichia coli ECRC101 0.99 OKFHMN_21145 recN DNA repair protein RecN 1.00 OKFHMN_14410 uvrD DNA helicase II — —
Escherichia fergusonii Becca 0.99 EFB2_01277 DNA repair protein RecN 1.00 EFB2_04824 DNA helicase II low > 86
Escherichia coli ECOR38 0.99 HEPCGN_20265 recN DNA repair protein RecN 1.00 HEPCGN_13115 uvrD DNA helicase II low > 85
Escherichia coli ECRC98 0.99 JDDGAC_24810 recN DNA repair protein RecN 1.00 JDDGAC_18035 uvrD DNA helicase II — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS14775 DNA repair protein RecN 1.00 ECOLIN_RS21885 DNA helicase II low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF4162 DNA repair protein RecN 0.99 GFF241 ATP-dependent DNA helicase UvrD/PcrA 0.69 2
Enterobacter asburiae PDN3 0.86 EX28DRAFT_2719 DNA repair protein RecN 0.97 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) low > 76
Enterobacter sp. TBS_079 0.85 MPMX20_03486 DNA repair protein RecN 0.97 MPMX20_04463 DNA helicase II low > 85
Klebsiella michiganensis M5al 0.84 BWI76_RS21560 DNA repair protein RecN 0.98 BWI76_RS01220 DNA-dependent helicase II low > 92
Serratia liquefaciens MT49 0.77 IAI46_19635 DNA repair protein RecN 0.89 IAI46_00735 DNA helicase II low > 86
Pantoea sp. MT58 0.77 IAI47_04810 DNA repair protein RecN 0.89 IAI47_18390 DNA helicase II low > 76
Rahnella sp. WP5 0.75 EX31_RS21760 DNA repair protein RecN 0.87 EX31_RS15175 DNA helicase II 0.32 16
Dickeya dadantii 3937 0.73 DDA3937_RS04325 DNA repair protein RecN 0.89 DDA3937_RS19880 DNA helicase II 0.56 15
Erwinia tracheiphila SCR3 0.73 LU632_RS16985 recN DNA repair protein RecN 0.90 LU632_RS24125 uvrD DNA helicase II — —
Dickeya dianthicola 67-19 0.72 HGI48_RS04320 DNA repair protein RecN 0.89 HGI48_RS20035 DNA helicase II low > 71
Dickeya dianthicola ME23 0.72 DZA65_RS04235 DNA repair protein RecN 0.89 DZA65_RS21080 DNA helicase II low > 75
Pectobacterium carotovorum WPP14 0.72 HER17_RS17420 DNA repair protein RecN 0.91 HER17_RS01360 DNA helicase II low > 75
Shewanella oneidensis MR-1 0.55 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.72 SO0467 uvrD DNA helicase II (NCBI ptt file) 0.57 4
Shewanella sp. ANA-3 0.55 Shewana3_1104 recombination and repair protein (RefSeq) 0.72 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) low > 73
Shewanella amazonensis SB2B 0.54 Sama_1026 recombination and repair protein (RefSeq) 0.71 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) 0.49 18
Shewanella loihica PV-4 0.53 Shew_1196 recombination and repair protein (RefSeq) 0.72 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_04395 DNA repair protein RecN 0.71 CSW01_01015 DNA helicase II 0.43 20
Alteromonas macleodii MIT1002 0.43 MIT1002_01443 Recombination protein N 0.67 MIT1002_00153 DNA helicase II low > 70
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_5106 DNA repair protein RecN 0.62 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA 0.41 7
Marinobacter adhaerens HP15 0.40 HP15_3084 DNA repair protein RecN 0.59 HP15_3403 UvrD/REP helicase 0.67 16
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_1178 DNA repair protein RecN 0.61 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA 0.34 9
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_3370 DNA repair protein RecN 0.62 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA 0.56 11
Pseudomonas sp. S08-1 0.39 OH686_17050 DNA repair protein RecN 0.60 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Pseudomonas sp. RS175 0.39 PFR28_00071 DNA repair protein RecN 0.62 PFR28_04523 DNA helicase II low > 88
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_07510 DNA repair protein RecN 0.62 AO356_11990 DNA helicase II 0.75 7
Pseudomonas fluorescens SBW25 0.38 PFLU_RS25910 DNA repair protein RecN 0.62 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS25910 DNA repair protein RecN 0.62 PFLU_RS29900 DNA helicase II 0.36 1
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_05660 DNA repair protein RecN 0.62 AO353_10055 DNA helicase II 0.52 7
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_4197 DNA replication and repair protein RecN 0.61 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_4197 DNA replication and repair protein RecN 0.61 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas stutzeri RCH2 0.38 Psest_0962 DNA repair protein RecN 0.61 Psest_4098 Superfamily I DNA and RNA helicases 0.28 20
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS03060 DNA repair protein 0.43 HSERO_RS02160 DNA-dependent helicase low > 78
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS26535 DNA repair protein RecN 0.43 QEN71_RS05110 3'-5' exonuclease — —
Pseudomonas putida KT2440 0.37 PP_4729 factor used in recombination and DNA repair 0.62 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex 0.13 56
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_0601 DNA replication and repair protein RecN 0.61 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.52 23
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS01065 DNA repair protein RecN 0.42 ABZR87_RS15705 UvrD-helicase domain-containing protein low > 80
Ralstonia solanacearum PSI07 0.36 RPSI07_RS11890 DNA repair protein RecN 0.41 RPSI07_RS13455 DNA-dependent helicase — —
Ralstonia solanacearum UW163 0.36 UW163_RS08210 DNA repair protein RecN 0.41 UW163_RS09895 DNA-dependent helicase — —
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS05415 DNA repair protein RecN 0.41 RALBFv3_RS03775 DNA-dependent helicase — —
Paraburkholderia graminis OAS925 0.35 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.44 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Ralstonia solanacearum GMI1000 0.35 RS_RS13275 DNA repair protein RecN 0.42 RS_RS11220 DNA-dependent helicase low > 80
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS05910 DNA repair protein 0.42 RR42_RS15090 DNA helicase 0.47 14
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS03560 DNA repair protein 0.44 BPHYT_RS13840 DNA-dependent helicase — —
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_04692 DNA replication and repair protein RecN 0.44 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS05665 DNA repair protein RecN 0.59 ABZR86_RS16965 DNA helicase II 0.92 2
Castellaniella sp019104865 MT123 0.33 ABCV34_RS07470 DNA repair protein RecN 0.41 ABCV34_RS05210 UvrD-helicase domain-containing protein low > 48
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_07340 recN DNA repair protein RecN 0.60 OKGIIK_16775 DNA helicase low > 52
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS17960 DNA repair protein RecN 0.59 LRK54_RS06850 DNA helicase II 0.59 2
Rhodanobacter denitrificans MT42 0.33 LRK55_RS17815 DNA repair protein RecN 0.59 LRK55_RS06595 DNA helicase II — —
Dechlorosoma suillum PS 0.33 Dsui_3072 DNA repair protein RecN 0.45 Dsui_1227 DNA/RNA helicase, superfamily I 0.77 12
Acidovorax sp. GW101-3H11 0.32 Ac3H11_3460 DNA repair protein RecN 0.42 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF829 DNA repair protein RecN 0.41 GFF5598 ATP-dependent DNA helicase UvrD/PcrA — —
Variovorax sp. SCN45 0.32 GFF2357 DNA repair protein RecN 0.41 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 127
Lysobacter sp. OAE881 0.31 ABIE51_RS11655 DNA repair protein RecN 0.59 ABIE51_RS01985 DNA helicase II 0.72 2
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.3431.1 DNA repair protein RecN 0.57 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA low > 74
Magnetospirillum magneticum AMB-1 0.27 AMB_RS19520 DNA repair protein RecN 0.35 AMB_RS03725 DNA helicase II — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.26 ABZR88_RS06580 DNA repair protein RecN 0.31 ABZR88_RS07840 ATP-dependent helicase — —
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_1026 DNA repair protein RecN 0.35 Ga0059261_0249 Superfamily I DNA and RNA helicases 0.34 16
Bacteroides thetaiotaomicron VPI-5482 0.25 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.31 BT0657 ATP-dependent DNA helicase (NCBI ptt file) — —
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS02000 DNA repair protein RecN 0.32 HMPREF1078_RS03560 3'-5' exonuclease low > 61
Bosea sp. OAE506 0.24 ABIE41_RS12645 DNA repair protein RecN 0.37 ABIE41_RS12730 UvrD-helicase domain-containing protein 0.39 54
Azospirillum brasilense Sp245 0.24 AZOBR_RS12395 DNA repair protein RecN 0.36 AZOBR_RS12445 DNA helicase II — —
Rhodospirillum rubrum S1H 0.24 Rru_A0940 DNA repair protein RecN (NCBI) 0.34 Rru_A1536 UvrD/REP helicase (NCBI) — —
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS10900 DNA repair protein RecN 0.31 HMPREF1181_RS16505 UvrD-helicase domain-containing protein low > 56
Phaeobacter inhibens DSM 17395 0.24 PGA1_c09720 DNA repair protein RecN 0.35 PGA1_c09450 DNA helicase II UvrD low > 62
Bacteroides ovatus ATCC 8483 0.24 BACOVA_00200 DNA repair protein RecN 0.31 BACOVA_02365 UvrD/REP helicase — —
Dinoroseobacter shibae DFL-12 0.24 Dshi_2413 DNA repair protein RecN (RefSeq) 0.35 Dshi_2483 UvrD/REP helicase (RefSeq) — —
Azospirillum sp. SherDot2 0.24 MPMX19_01601 DNA repair protein RecN 0.36 MPMX19_01610 ATP-dependent DNA helicase PcrA low > 112
Echinicola vietnamensis KMM 6221, DSM 17526 0.23 Echvi_2067 DNA repair protein RecN 0.34 Echvi_0292 Superfamily I DNA and RNA helicases — —
Pedobacter sp. GW460-11-11-14-LB5 0.23 CA265_RS14855 DNA repair protein RecN 0.31 CA265_RS12980 ATP-dependent DNA helicase — —
Phocaeicola vulgatus CL09T03C04 0.23 HMPREF1058_RS18225 DNA repair protein RecN 0.31 HMPREF1058_RS03305 UvrD-helicase domain-containing protein 0.71 6
Phocaeicola dorei CL03T12C01 0.23 ABI39_RS14500 DNA repair protein RecN 0.31 ABI39_RS17735 UvrD-helicase domain-containing protein — —
Synechococcus elongatus PCC 7942 0.23 Synpcc7942_1779 recN DNA repair protein RecN 0.29 Synpcc7942_2168 pcrA ATP-dependent DNA helicase, Rep family low > 38
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS02620 DNA repair protein RecN 0.35 A4249_RS04960 UvrD-helicase domain-containing protein low > 48
Fusobacterium nucleatum SB010 0.22 HUW76_08055 DNA repair protein RecN 0.29 HUW76_07175 UvrD-helicase domain-containing protein low > 35
Pontibacter actiniarum KMM 6156, DSM 19842 0.21 CA264_13235 DNA repair protein RecN 0.32 CA264_07795 ATP-dependent DNA helicase — —
Mycobacterium tuberculosis H37Rv 0.21 Rv1696 Probable DNA repair protein RecN (recombination protein N) 0.32 Rv0949 Probable ATP-dependent DNA helicase II UvrD1 low > 58
Desulfovibrio vulgaris Hildenborough JW710 0.17 DVU2463 recN DNA repair protein RecN (TIGR) 0.21 DVU0156 pcrA ATP-dependent DNA helicase, UvrD/REP family (TIGR) 0.37 12

Not shown: 9 genomes with orthologs for b2616 only; 1 genomes with orthologs for b3813 only