Conservation of cofitness between b4389 and b3813 in Escherichia coli BW25113

91 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b4389 radA predicted repair protein (NCBI) 1.0 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.53 6
Escherichia coli Nissle 1917 1.00 ECOLIN_RS25190 DNA repair protein RadA 1.00 ECOLIN_RS21885 DNA helicase II low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03672 DNA repair protein RadA 1.00 OHPLBJKB_04237 DNA helicase II low > 73
Escherichia fergusonii Becca 1.00 EFB2_04057 DNA repair protein RadA 1.00 EFB2_04824 DNA helicase II low > 86
Escherichia coli BL21 1.00 ECD_04265 DNA repair protein 1.00 ECD_03689 DNA-dependent ATPase I and helicase II — —
Escherichia coli ECRC101 1.00 OKFHMN_11195 radA DNA repair protein RadA 1.00 OKFHMN_14410 uvrD DNA helicase II — —
Escherichia coli ECRC102 1.00 NIAGMN_09045 radA DNA repair protein RadA 1.00 NIAGMN_12165 uvrD DNA helicase II — —
Escherichia coli ECRC101 1.00 MCAODC_01710 radA DNA repair protein RadA 1.00 MCAODC_04915 uvrD DNA helicase II — —
Escherichia coli ECRC99 1.00 KEDOAH_16960 radA DNA repair protein RadA 1.00 KEDOAH_13740 uvrD DNA helicase II — —
Escherichia coli ECOR27 1.00 NOLOHH_03520 radA DNA repair protein RadA 1.00 NOLOHH_06540 uvrD DNA helicase II low > 57
Escherichia coli ECRC98 1.00 JDDGAC_14790 radA DNA repair protein RadA 1.00 JDDGAC_18035 uvrD DNA helicase II — —
Escherichia coli ECRC62 1.00 BNILDI_08075 radA DNA repair protein RadA 1.00 BNILDI_04995 uvrD DNA helicase II — —
Escherichia coli ECOR38 0.99 HEPCGN_09195 radA DNA repair protein RadA 1.00 HEPCGN_13115 uvrD DNA helicase II low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.98 GFF1057 DNA repair protein RadA 0.99 GFF241 ATP-dependent DNA helicase UvrD/PcrA 0.46 4
Enterobacter sp. TBS_079 0.97 MPMX20_00694 DNA repair protein RadA 0.97 MPMX20_04463 DNA helicase II low > 85
Klebsiella michiganensis M5al 0.97 BWI76_RS04165 DNA repair protein RadA 0.98 BWI76_RS01220 DNA-dependent helicase II low > 92
Enterobacter asburiae PDN3 0.97 EX28DRAFT_3597 DNA repair protein RadA 0.97 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) low > 76
Erwinia tracheiphila SCR3 0.94 LU632_RS02550 radA DNA repair protein RadA 0.90 LU632_RS24125 uvrD DNA helicase II — —
Rahnella sp. WP5 0.94 EX31_RS04030 DNA repair protein RadA 0.87 EX31_RS15175 DNA helicase II low > 89
Serratia liquefaciens MT49 0.93 IAI46_02945 DNA repair protein RadA 0.89 IAI46_00735 DNA helicase II low > 86
Pantoea sp. MT58 0.93 IAI47_16345 DNA repair protein RadA 0.89 IAI47_18390 DNA helicase II low > 76
Pectobacterium carotovorum WPP14 0.90 HER17_RS19085 DNA repair protein RadA 0.91 HER17_RS01360 DNA helicase II low > 75
Dickeya dianthicola ME23 0.88 DZA65_RS02485 DNA repair protein RadA 0.89 DZA65_RS21080 DNA helicase II low > 75
Dickeya dianthicola 67-19 0.87 HGI48_RS02380 DNA repair protein RadA 0.89 HGI48_RS20035 DNA helicase II low > 71
Dickeya dadantii 3937 0.87 DDA3937_RS02420 DNA repair protein RadA 0.89 DDA3937_RS19880 DNA helicase II low > 74
Vibrio cholerae E7946 ATCC 55056 0.80 CSW01_11870 DNA repair protein RadA 0.71 CSW01_01015 DNA helicase II 0.78 8
Shewanella oneidensis MR-1 0.77 SO1226 radA DNA repair protein RadA (NCBI ptt file) 0.72 SO0467 uvrD DNA helicase II (NCBI ptt file) 0.55 8
Shewanella sp. ANA-3 0.77 Shewana3_1049 DNA repair protein RadA (RefSeq) 0.72 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) 0.48 11
Shewanella amazonensis SB2B 0.75 Sama_0981 DNA repair protein RadA (RefSeq) 0.71 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) 0.34 41
Alteromonas macleodii MIT1002 0.73 MIT1002_02706 Lon protease 2 0.67 MIT1002_00153 DNA helicase II low > 70
Marinobacter adhaerens HP15 0.69 HP15_487 DNA repair protein RadA 0.59 HP15_3403 UvrD/REP helicase 0.72 14
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_4275 DNA replication and repair protein RadA 0.61 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_4275 DNA replication and repair protein RadA 0.61 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_1442 DNA repair protein RadA 0.62 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA 0.27 59
Pseudomonas sp. RS175 0.64 PFR28_03792 DNA repair protein RadA 0.62 PFR28_04523 DNA helicase II low > 88
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_2768 DNA repair protein RadA 0.61 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA 0.28 42
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_15680 DNA repair protein RadA 0.62 AO356_11990 DNA helicase II 0.67 6
Pseudomonas fluorescens SBW25-INTG 0.64 PFLU_RS26230 DNA repair protein RadA 0.62 PFLU_RS29900 DNA helicase II 0.20 45
Pseudomonas fluorescens SBW25 0.64 PFLU_RS26230 DNA repair protein RadA 0.62 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas fluorescens FW300-N2E2 0.64 Pf6N2E2_5076 DNA repair protein RadA 0.62 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA 0.33 13
Pseudomonas sp. S08-1 0.63 OH686_16185 DNA repair protein RadA 0.60 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Pseudomonas fluorescens FW300-N2E3 0.63 AO353_13980 DNA repair protein RadA 0.62 AO353_10055 DNA helicase II 0.45 15
Pseudomonas stutzeri RCH2 0.63 Psest_3401 DNA repair protein RadA 0.61 Psest_4098 Superfamily I DNA and RNA helicases 0.28 22
Pseudomonas putida KT2440 0.62 PP_4644 DNA repair enzyme 0.62 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex low > 96
Kangiella aquimarina DSM 16071 0.60 B158DRAFT_0877 DNA replication and repair protein RadA 0.61 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.56 14
Xanthomonas campestris pv. campestris strain 8004 0.59 Xcc-8004.3812.1 DNA repair protein RadA 0.57 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA low > 74
Rhodanobacter denitrificans MT42 0.58 LRK55_RS02280 DNA repair protein RadA 0.59 LRK55_RS06595 DNA helicase II — —
Rhodanobacter sp. FW510-T8 0.58 OKGIIK_09580 radA DNA repair protein RadA 0.60 OKGIIK_16775 DNA helicase low > 52
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS02525 DNA repair protein RadA 0.59 LRK54_RS06850 DNA helicase II 0.38 18
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS08845 DNA repair protein RadA 0.59 ABZR86_RS16965 DNA helicase II 0.91 2
Lysobacter sp. OAE881 0.57 ABIE51_RS07685 DNA repair protein RadA 0.59 ABIE51_RS01985 DNA helicase II low > 62
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS06320 DNA repair protein RadA 0.43 QEN71_RS05110 3'-5' exonuclease — —
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS12030 DNA repair protein RadA 0.42 RR42_RS15090 DNA helicase — —
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS11670 DNA repair protein RadA 0.42 ABZR87_RS15705 UvrD-helicase domain-containing protein low > 80
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS12235 DNA repair protein RadA 0.44 BPHYT_RS13840 DNA-dependent helicase — —
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_00590 DNA replication and repair protein RadA 0.44 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Paraburkholderia graminis OAS925 0.54 ABIE53_002526 DNA repair protein RadA/Sms 0.44 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS10745 DNA repair protein RadA 0.43 HSERO_RS02160 DNA-dependent helicase 0.39 24
Ralstonia solanacearum IBSBF1503 0.53 RALBFv3_RS00210 DNA repair protein RadA 0.41 RALBFv3_RS03775 DNA-dependent helicase — —
Ralstonia solanacearum UW163 0.53 UW163_RS13540 DNA repair protein RadA 0.41 UW163_RS09895 DNA-dependent helicase — —
Ralstonia solanacearum GMI1000 0.53 RS_RS06880 DNA repair protein RadA 0.42 RS_RS11220 DNA-dependent helicase low > 80
Ralstonia solanacearum PSI07 0.53 RPSI07_RS17270 DNA repair protein RadA 0.41 RPSI07_RS13455 DNA-dependent helicase — —
Variovorax sp. SCN45 0.52 GFF5087 DNA repair protein RadA 0.41 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 127
Variovorax sp. OAS795 0.52 ABID97_RS03770 DNA repair protein RadA 0.42 ABID97_RS09150 UvrD-helicase domain-containing protein low > 91
Dechlorosoma suillum PS 0.52 Dsui_2413 DNA repair protein RadA 0.45 Dsui_1227 DNA/RNA helicase, superfamily I low > 51
Castellaniella sp019104865 MT123 0.52 ABCV34_RS02345 DNA repair protein RadA 0.41 ABCV34_RS05210 UvrD-helicase domain-containing protein low > 48
Acidovorax sp. GW101-3H11 0.51 Ac3H11_3371 DNA repair protein RadA 0.42 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.50 GFF1833 DNA repair protein RadA 0.41 GFF5598 ATP-dependent DNA helicase UvrD/PcrA — —
Azospirillum brasilense Sp245 0.42 AZOBR_RS08320 DNA repair protein RadA 0.36 AZOBR_RS12445 DNA helicase II 0.52 29
Magnetospirillum magneticum AMB-1 0.42 AMB_RS10555 DNA repair protein RadA 0.35 AMB_RS03725 DNA helicase II low > 64
Azospirillum sp. SherDot2 0.42 MPMX19_00904 DNA repair protein RadA 0.36 MPMX19_01610 ATP-dependent DNA helicase PcrA low > 112
Echinicola vietnamensis KMM 6221, DSM 17526 0.41 Echvi_1031 DNA repair protein RadA 0.34 Echvi_0292 Superfamily I DNA and RNA helicases — —
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS08395 DNA repair protein RadA 0.32 HMPREF1078_RS03560 3'-5' exonuclease low > 61
Bosea sp. OAE506 0.41 ABIE41_RS17800 DNA repair protein RadA 0.37 ABIE41_RS12730 UvrD-helicase domain-containing protein 0.39 36
Phaeobacter inhibens DSM 17395 0.41 PGA1_c10840 DNA repair protein RadA 0.35 PGA1_c09450 DNA helicase II UvrD low > 62
Dinoroseobacter shibae DFL-12 0.40 Dshi_2129 DNA repair protein RadA (RefSeq) 0.35 Dshi_2483 UvrD/REP helicase (RefSeq) — —
Phocaeicola vulgatus CL09T03C04 0.40 HMPREF1058_RS14715 DNA repair protein RadA 0.31 HMPREF1058_RS03305 UvrD-helicase domain-containing protein 0.45 36
Phocaeicola dorei CL03T12C01 0.40 ABI39_RS10420 DNA repair protein RadA 0.31 ABI39_RS17735 UvrD-helicase domain-containing protein — —
Bacteroides stercoris CC31F 0.40 HMPREF1181_RS00075 DNA repair protein RadA 0.31 HMPREF1181_RS16505 UvrD-helicase domain-containing protein low > 56
Bacteroides thetaiotaomicron VPI-5482 0.40 BT2406 putative DNA repair protein (NCBI ptt file) 0.31 BT0657 ATP-dependent DNA helicase (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.40 BACOVA_03019 DNA repair protein RadA 0.31 BACOVA_02365 UvrD/REP helicase — —
Synechococcus elongatus PCC 7942 0.40 Synpcc7942_1452 radA DNA repair protein RadA 0.29 Synpcc7942_2168 pcrA ATP-dependent DNA helicase, Rep family low > 38
Brevundimonas sp. GW460-12-10-14-LB2 0.39 A4249_RS03745 DNA repair protein RadA 0.35 A4249_RS04960 UvrD-helicase domain-containing protein low > 48
Mucilaginibacter yixingensis YX-36 DSM 26809 0.39 ABZR88_RS20495 DNA repair protein RadA 0.31 ABZR88_RS07840 ATP-dependent helicase — —
Rhodospirillum rubrum S1H 0.39 Rru_A0406 DNA repair protein RadA (NCBI) 0.34 Rru_A1536 UvrD/REP helicase (NCBI) 0.76 20
Pontibacter actiniarum KMM 6156, DSM 19842 0.39 CA264_17125 DNA repair protein RadA 0.32 CA264_07795 ATP-dependent DNA helicase — —
Pedobacter sp. GW460-11-11-14-LB5 0.39 CA265_RS22660 DNA repair protein RadA 0.31 CA265_RS12980 ATP-dependent DNA helicase — —
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_0751 DNA repair protein RadA 0.35 Ga0059261_0249 Superfamily I DNA and RNA helicases 0.40 10
Shewanella loihica PV-4 0.37 Shew_2807 DNA repair protein RadA (RefSeq) 0.72 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) 0.55 24
Desulfovibrio vulgaris Hildenborough JW710 0.35 DVU1590 radA DNA repair protein RadA (TIGR) 0.21 DVU0156 pcrA ATP-dependent DNA helicase, UvrD/REP family (TIGR) low > 55
Fusobacterium nucleatum SB010 0.32 HUW76_02270 DNA repair protein RadA 0.29 HUW76_07175 UvrD-helicase domain-containing protein low > 35
Mycobacterium tuberculosis H37Rv 0.32 Rv3585 DNA repair protein RadA (DNA repair protein SMS) 0.32 Rv0949 Probable ATP-dependent DNA helicase II UvrD1 low > 58

Not shown: 10 genomes with orthologs for b4389 only; 0 genomes with orthologs for b3813 only