| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BW25113 | 1.0 | b2954 | yggV | putative deoxyribonucleotide triphosphate pyrophosphatase (NCBI) | 1.0 | b3813 | uvrD | DNA-dependent ATPase I and helicase II (NCBI) | 0.39 | 9 |
| Escherichia fergusonii Becca | 0.99 | EFB2_00948 | | dITP/XTP pyrophosphatase | 1.00 | EFB2_04824 | | DNA helicase II | low | > 86 |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS16430 | | XTP/dITP diphosphatase | 1.00 | ECOLIN_RS21885 | | DNA helicase II | 0.76 | 33 |
| Escherichia coli ECRC62 | 0.98 | BNILDI_09690 | rdgB | XTP/dITP diphosphatase | 1.00 | BNILDI_04995 | uvrD | DNA helicase II | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.98 | OHPLBJKB_00762 | | dITP/XTP pyrophosphatase | 1.00 | OHPLBJKB_04237 | | DNA helicase II | 0.44 | 33 |
| Escherichia coli ECOR27 | 0.98 | NOLOHH_11110 | rdgB | XTP/dITP diphosphatase | 1.00 | NOLOHH_06540 | uvrD | DNA helicase II | low | > 57 |
| Escherichia coli ECRC99 | 0.98 | KEDOAH_08900 | rdgB | XTP/dITP diphosphatase | 1.00 | KEDOAH_13740 | uvrD | DNA helicase II | — | — |
| Escherichia coli ECRC102 | 0.98 | NIAGMN_17005 | rdgB | XTP/dITP diphosphatase | 1.00 | NIAGMN_12165 | uvrD | DNA helicase II | — | — |
| Escherichia coli ECRC101 | 0.98 | OKFHMN_19240 | rdgB | XTP/dITP diphosphatase | 1.00 | OKFHMN_14410 | uvrD | DNA helicase II | — | — |
| Escherichia coli ECRC98 | 0.98 | JDDGAC_22870 | rdgB | XTP/dITP diphosphatase | 1.00 | JDDGAC_18035 | uvrD | DNA helicase II | — | — |
| Escherichia coli BL21 | 0.98 | ECD_02784 | | dITP/XTP pyrophosphatase | 1.00 | ECD_03689 | | DNA-dependent ATPase I and helicase II | — | — |
| Escherichia coli ECOR38 | 0.98 | HEPCGN_18545 | rdgB | XTP/dITP diphosphatase | 1.00 | HEPCGN_13115 | uvrD | DNA helicase II | low | > 85 |
| Escherichia coli ECRC101 | 0.98 | MCAODC_09760 | rdgB | XTP/dITP diphosphatase | 1.00 | MCAODC_04915 | uvrD | DNA helicase II | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.94 | GFF3057 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.99 | GFF241 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 78 |
| Enterobacter sp. TBS_079 | 0.91 | MPMX20_03812 | | dITP/XTP pyrophosphatase | 0.97 | MPMX20_04463 | | DNA helicase II | 0.29 | 42 |
| Klebsiella michiganensis M5al | 0.90 | BWI76_RS24115 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.98 | BWI76_RS01220 | | DNA-dependent helicase II | 0.29 | 17 |
| Enterobacter asburiae PDN3 | 0.90 | EX28DRAFT_2992 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.97 | EX28DRAFT_4482 | | ATP-dependent DNA helicase UvrD (EC 3.6.1.-) | low | > 76 |
| Dickeya dianthicola 67-19 | 0.84 | HGI48_RS17365 | | XTP/dITP diphosphatase | 0.89 | HGI48_RS20035 | | DNA helicase II | low | > 71 |
| Dickeya dianthicola ME23 | 0.83 | DZA65_RS18455 | | XTP/dITP diphosphatase | 0.89 | DZA65_RS21080 | | DNA helicase II | low | > 75 |
| Dickeya dadantii 3937 | 0.83 | DDA3937_RS17320 | | XTP/dITP diphosphatase | 0.89 | DDA3937_RS19880 | | DNA helicase II | 0.57 | 16 |
| Pantoea sp. MT58 | 0.82 | IAI47_03585 | | XTP/dITP diphosphatase | 0.89 | IAI47_18390 | | DNA helicase II | low | > 76 |
| Rahnella sp. WP5 | 0.82 | EX31_RS02705 | | XTP/dITP diphosphatase | 0.87 | EX31_RS15175 | | DNA helicase II | 0.33 | 54 |
| Serratia liquefaciens MT49 | 0.79 | IAI46_21430 | | XTP/dITP diphosphatase | 0.89 | IAI46_00735 | | DNA helicase II | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.78 | HER17_RS03790 | | XTP/dITP diphosphatase | 0.91 | HER17_RS01360 | | DNA helicase II | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.77 | LU632_RS05450 | | XTP/dITP diphosphatase | 0.90 | LU632_RS24125 | uvrD | DNA helicase II | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.68 | CSW01_02430 | | non-canonical purine NTP pyrophosphatase | 0.71 | CSW01_01015 | | DNA helicase II | low | > 62 |
| Marinobacter adhaerens HP15 | 0.66 | HP15_281 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.59 | HP15_3403 | | UvrD/REP helicase | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.63 | MIT1002_00940 | | dITP/XTP pyrophosphatase | 0.67 | MIT1002_00153 | | DNA helicase II | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.59 | B158DRAFT_0200 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.61 | B158DRAFT_0238 | | Superfamily I DNA and RNA helicases | low | > 40 |
| Shewanella loihica PV-4 | 0.58 | Shew_1132 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase (RefSeq) | 0.72 | Shew_3385 | uvrD | DNA-dependent helicase II (RefSeq) | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.58 | Xcc-8004.1223.1 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.57 | Xcc-8004.5114.1 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 74 |
| Shewanella amazonensis SB2B | 0.56 | Sama_2482 | | Ham1-like protein (RefSeq) | 0.71 | Sama_0419 | uvrD | DNA-dependent helicase II (RefSeq) | 0.51 | 3 |
| Shewanella sp. ANA-3 | 0.56 | Shewana3_1189 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase (RefSeq) | 0.72 | Shewana3_0469 | uvrD | DNA-dependent helicase II (RefSeq) | low | > 73 |
| Lysobacter sp. OAE881 | 0.55 | ABIE51_RS17295 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.59 | ABIE51_RS01985 | | DNA helicase II | low | > 62 |
| Shewanella oneidensis MR-1 | 0.55 | SO3358 | | HAM1 protein (NCBI ptt file) | 0.72 | SO0467 | uvrD | DNA helicase II (NCBI ptt file) | low | > 76 |
| Herbaspirillum seropedicae SmR1 | 0.54 | HSERO_RS10660 | | nucleoside-triphosphate diphosphatase | 0.43 | HSERO_RS02160 | | DNA-dependent helicase | low | > 78 |
| Ralstonia solanacearum UW163 | 0.52 | UW163_RS10370 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.41 | UW163_RS09895 | | DNA-dependent helicase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.52 | RALBFv3_RS03350 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.41 | RALBFv3_RS03775 | | DNA-dependent helicase | — | — |
| Dechlorosoma suillum PS | 0.52 | Dsui_0492 | | non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family | 0.45 | Dsui_1227 | | DNA/RNA helicase, superfamily I | low | > 51 |
| Ralstonia sp. UNC404CL21Col | 0.51 | ABZR87_RS15260 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.42 | ABZR87_RS15705 | | UvrD-helicase domain-containing protein | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.51 | RPSI07_RS13835 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.41 | RPSI07_RS13455 | | DNA-dependent helicase | — | — |
| Ralstonia solanacearum GMI1000 | 0.51 | RS_RS10835 | | non-canonical purine NTP pyrophosphatase | 0.42 | RS_RS11220 | | DNA-dependent helicase | low | > 80 |
| Dyella japonica UNC79MFTsu3.2 | 0.51 | ABZR86_RS11905 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.59 | ABZR86_RS16965 | | DNA helicase II | low | > 74 |
| Pseudomonas syringae pv. syringae B728a | 0.50 | Psyr_0472 | | Ham1-like protein | 0.61 | Psyr_5065 | | ATP-dependent DNA helicase UvrD | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.50 | Psyr_0472 | | Ham1-like protein | 0.61 | Psyr_5065 | | ATP-dependent DNA helicase UvrD | low | > 86 |
| Rhodanobacter sp. FW510-T8 | 0.50 | OKGIIK_12155 | rdgB | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.60 | OKGIIK_16775 | | DNA helicase | low | > 52 |
| Pseudomonas sp. S08-1 | 0.49 | OH686_11015 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.60 | OH686_13045 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.49 | RR42_RS04885 | | nucleoside-triphosphate diphosphatase | 0.42 | RR42_RS15090 | | DNA helicase | 0.32 | 107 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.49 | H281DRAFT_04009 | | XTP/dITP diphosphohydrolase | 0.44 | H281DRAFT_04469 | | ATP-dependent DNA helicase UvrD | — | — |
| Rhodanobacter denitrificans MT42 | 0.49 | LRK55_RS11465 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.59 | LRK55_RS06595 | | DNA helicase II | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.49 | LRK54_RS11740 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.59 | LRK54_RS06850 | | DNA helicase II | low | > 59 |
| Pseudomonas putida KT2440 | 0.49 | PP_5100 | | dITP/XTP pyrophosphatase | 0.62 | PP_5352 | | DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex | low | > 96 |
| Paraburkholderia graminis OAS925 | 0.49 | ABIE53_003235 | | XTP/dITP diphosphohydrolase | 0.44 | ABIE53_002936 | | DNA helicase-2/ATP-dependent DNA helicase PcrA | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.49 | QEN71_RS03640 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.43 | QEN71_RS05110 | | 3'-5' exonuclease | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.49 | AO353_08195 | | non-canonical purine NTP pyrophosphatase | 0.62 | AO353_10055 | | DNA helicase II | low | > 101 |
| Pseudomonas fluorescens SBW25 | 0.49 | PFLU_RS28400 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.62 | PFLU_RS29900 | | DNA helicase II | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.49 | PFLU_RS28400 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.62 | PFLU_RS29900 | | DNA helicase II | 0.15 | 52 |
| Pseudomonas sp. RS175 | 0.49 | PFR28_04248 | | dITP/XTP pyrophosphatase | 0.62 | PFR28_04523 | | DNA helicase II | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.48 | PfGW456L13_1004 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.62 | PfGW456L13_724 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_4594 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.62 | Pf6N2E2_4273 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_13395 | | non-canonical purine NTP pyrophosphatase | 0.62 | AO356_11990 | | DNA helicase II | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.48 | Pf1N1B4_2335 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.61 | Pf1N1B4_2005 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.48 | Psest_0277 | | non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family | 0.61 | Psest_4098 | | Superfamily I DNA and RNA helicases | low | > 67 |
| Burkholderia phytofirmans PsJN | 0.47 | BPHYT_RS15330 | | nucleoside-triphosphate diphosphatase | 0.44 | BPHYT_RS13840 | | DNA-dependent helicase | — | — |
| Castellaniella sp019104865 MT123 | 0.46 | ABCV34_RS03520 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.41 | ABCV34_RS05210 | | UvrD-helicase domain-containing protein | low | > 48 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.44 | GFF3255 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.41 | GFF5598 | | ATP-dependent DNA helicase UvrD/PcrA | — | — |
| Variovorax sp. SCN45 | 0.42 | GFF2382 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.66) | 0.41 | GFF4000 | | ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.42 | Ac3H11_3671 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.42 | Ac3H11_1660 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 79 |
| Variovorax sp. OAS795 | 0.41 | ABID97_RS23635 | | non-canonical purine NTP pyrophosphatase | 0.42 | ABID97_RS09150 | | UvrD-helicase domain-containing protein | low | > 91 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.40 | DVU3154 | | HAM1 family protein (TIGR) | 0.21 | DVU0156 | pcrA | ATP-dependent DNA helicase, UvrD/REP family (TIGR) | — | — |
| Rhodospirillum rubrum S1H | 0.35 | Rru_A3640 | | Ham1-like protein (NCBI) | 0.34 | Rru_A1536 | | UvrD/REP helicase (NCBI) | low | > 58 |
| Synechococcus elongatus PCC 7942 | 0.35 | Synpcc7942_1266 | rdgB | Ham1-like protein | 0.29 | Synpcc7942_2168 | pcrA | ATP-dependent DNA helicase, Rep family | low | > 38 |
| Magnetospirillum magneticum AMB-1 | 0.35 | AMB_RS22765 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.35 | AMB_RS03725 | | DNA helicase II | low | > 64 |
| Mycobacterium tuberculosis H37Rv | 0.34 | Rv1341 | | Conserved protein | 0.32 | Rv0949 | | Probable ATP-dependent DNA helicase II UvrD1 | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.33 | ABZR88_RS21980 | | non-canonical purine NTP diphosphatase | 0.31 | ABZR88_RS07840 | | ATP-dependent helicase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.33 | Ga0059261_2742 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.35 | Ga0059261_0249 | | Superfamily I DNA and RNA helicases | low | > 68 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.32 | Echvi_1180 | | non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family | 0.34 | Echvi_0292 | | Superfamily I DNA and RNA helicases | — | — |
| Bacteroides stercoris CC31F | 0.30 | HMPREF1181_RS01925 | | non-canonical purine NTP diphosphatase | 0.31 | HMPREF1181_RS16505 | | UvrD-helicase domain-containing protein | low | > 56 |
| Bosea sp. OAE506 | 0.30 | ABIE41_RS03300 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.37 | ABIE41_RS12730 | | UvrD-helicase domain-containing protein | low | > 77 |
| Phocaeicola dorei CL03T12C01 | 0.30 | ABI39_RS05750 | | non-canonical purine NTP diphosphatase | 0.31 | ABI39_RS17735 | | UvrD-helicase domain-containing protein | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.29 | HMPREF1058_RS11235 | | non-canonical purine NTP diphosphatase | 0.31 | HMPREF1058_RS03305 | | UvrD-helicase domain-containing protein | low | > 67 |
| Phaeobacter inhibens DSM 17395 | 0.29 | PGA1_c35040 | | nucleoside-triphosphatase RdgB | 0.35 | PGA1_c09450 | | DNA helicase II UvrD | low | > 62 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.28 | A4249_RS12440 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.35 | A4249_RS04960 | | UvrD-helicase domain-containing protein | — | — |
| Dinoroseobacter shibae DFL-12 | 0.28 | Dshi_3462 | | Ham1 family protein (RefSeq) | 0.35 | Dshi_2483 | | UvrD/REP helicase (RefSeq) | — | — |
| Bacteroides ovatus ATCC 8483 | 0.28 | BACOVA_02837 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.31 | BACOVA_02365 | | UvrD/REP helicase | — | — |
| Parabacteroides merdae CL09T00C40 | 0.28 | HMPREF1078_RS06565 | | non-canonical purine NTP diphosphatase | 0.32 | HMPREF1078_RS03560 | | 3'-5' exonuclease | low | > 61 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.27 | CA264_19890 | | non-canonical purine NTP pyrophosphatase | 0.32 | CA264_07795 | | ATP-dependent DNA helicase | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.27 | BT3128 | | putative xanthosine triphosphate pyrophosphatase (NCBI ptt file) | 0.31 | BT0657 | | ATP-dependent DNA helicase (NCBI ptt file) | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.27 | CA265_RS24990 | | non-canonical purine NTP pyrophosphatase | 0.31 | CA265_RS12980 | | ATP-dependent DNA helicase | — | — |
| Azospirillum brasilense Sp245 | 0.25 | AZOBR_RS02200 | | nucleoside-triphosphate diphosphatase | 0.36 | AZOBR_RS12445 | | DNA helicase II | low | > 97 |
| Azospirillum sp. SherDot2 | 0.24 | MPMX19_02575 | | dITP/XTP pyrophosphatase | 0.36 | MPMX19_01610 | | ATP-dependent DNA helicase PcrA | low | > 112 |
Not shown: 12 genomes with orthologs for b2954 only; 1 genomes with orthologs for b3813 only