Conservation of cofitness between b3822 and b3652 in Escherichia coli BW25113

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3822 recQ ATP-dependent DNA helicase (NCBI) 1.0 b3652 recG ATP-dependent DNA helicase (NCBI) 0.26 9
Escherichia coli Nissle 1917 1.00 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ 0.99 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 0.48 23
Escherichia fergusonii Becca 1.00 EFB2_04815 ATP-dependent DNA helicase RecQ 0.99 EFB2_00136 ATP-dependent DNA helicase RecG low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 1.00 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 0.70 7
Escherichia coli ECRC101 1.00 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 0.99 OKFHMN_15545 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC98 1.00 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 0.99 JDDGAC_19170 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC99 1.00 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 0.99 KEDOAH_12600 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECOR38 1.00 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 0.99 HEPCGN_14365 recG ATP-dependent DNA helicase RecG low > 85
Escherichia coli ECRC101 1.00 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 0.99 MCAODC_06055 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC62 1.00 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 1.00 BNILDI_04090 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECOR27 1.00 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 0.99 NOLOHH_07425 recG ATP-dependent DNA helicase RecG low > 57
Escherichia coli ECRC102 1.00 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 0.99 NIAGMN_13305 recG ATP-dependent DNA helicase RecG — —
Escherichia coli BL21 1.00 ECD_03701 ATP-dependent DNA helicase 1.00 ECD_03509 ATP-dependent DNA helicase 0.81 2
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF248 ATP-dependent DNA helicase RecQ 0.94 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.59 12
Enterobacter sp. TBS_079 0.93 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.92 MPMX20_00084 ATP-dependent DNA helicase RecG low > 85
Enterobacter asburiae PDN3 0.92 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.93 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 76
Klebsiella michiganensis M5al 0.92 BWI76_RS01245 DNA helicase RecQ 0.91 BWI76_RS27440 DNA helicase RecG low > 92
Pectobacterium carotovorum WPP14 0.82 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.82 HER17_RS21395 ATP-dependent DNA helicase RecG low > 75
Erwinia tracheiphila SCR3 0.82 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ 0.82 LU632_RS22190 recG ATP-dependent DNA helicase RecG low > 74
Pantoea sp. MT58 0.82 IAI47_18360 ATP-dependent DNA helicase RecQ 0.84 IAI47_00500 ATP-dependent DNA helicase RecG 0.30 60
Rahnella sp. WP5 0.81 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.80 EX31_RS15820 ATP-dependent DNA helicase RecG low > 89
Serratia liquefaciens MT49 0.81 IAI46_00770 ATP-dependent DNA helicase RecQ 0.84 IAI46_24905 ATP-dependent DNA helicase RecG 0.65 16
Dickeya dianthicola ME23 0.80 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.80 DZA65_RS22160 ATP-dependent DNA helicase RecG low > 75
Dickeya dianthicola 67-19 0.80 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.80 HGI48_RS21190 ATP-dependent DNA helicase RecG low > 71
Dickeya dadantii 3937 0.80 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.80 DDA3937_RS00170 ATP-dependent DNA helicase RecG low > 74
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_01045 DNA helicase RecQ 0.66 CSW01_13680 DNA helicase RecG low > 62
Shewanella oneidensis MR-1 0.58 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.64 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.31 30
Shewanella sp. ANA-3 0.58 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.65 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) low > 73
Shewanella amazonensis SB2B 0.58 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.65 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) low > 62
Shewanella loihica PV-4 0.57 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 0.64 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.61 15
Alteromonas macleodii MIT1002 0.53 MIT1002_00148 ATP-dependent DNA helicase RecQ 0.62 MIT1002_00111 ATP-dependent DNA helicase RecG low > 70
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_07560 DNA helicase RecQ 0.31 CA264_15020 DNA helicase RecG 0.55 10
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.55 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.48 2
Pseudomonas putida KT2440 0.45 PP_4516 ATP-dependent DNA 3 0.55 PP_5310 junction-specific ATP-dependent DNA helicase 0.22 5
Pseudomonas sp. RS175 0.45 PFR28_00788 ATP-dependent DNA helicase RecQ 0.54 PFR28_04435 ATP-dependent DNA helicase RecG low > 88
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS02465 ATP-dependent DNA helicase RecQ 0.44 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.40 14
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_04050 ATP-dependent DNA helicase RecQ 0.54 AO356_12380 ATP-dependent DNA helicase RecG low > 104
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 0.54 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 103
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ 0.55 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 87
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS21920 DNA helicase RecQ 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas fluorescens SBW25 0.45 PFLU_RS21920 DNA helicase RecQ 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas simiae WCS417 0.45 PS417_19950 ATP-dependent DNA helicase RecQ 0.55 PS417_27870 ATP-dependent DNA helicase RecG low > 88
Phocaeicola vulgatus CL09T03C04 0.44 HMPREF1058_RS14585 DNA helicase RecQ 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS20865 DNA helicase RecQ 0.29 ABZR88_RS17240 ATP-dependent DNA helicase RecG low > 71
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS13000 DNA helicase RecQ 0.51 LRK54_RS11805 ATP-dependent DNA helicase RecG low > 59
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_18430 ATP-dependent DNA helicase RecQ 0.55 AO353_09320 ATP-dependent DNA helicase RecG low > 101
Dechlorosoma suillum PS 0.44 Dsui_3092 ATP-dependent DNA helicase RecQ 0.41 Dsui_0311 ATP-dependent DNA helicase RecG low > 51
Pseudomonas stutzeri RCH2 0.44 Psest_1869 ATP-dependent DNA helicase RecQ 0.55 Psest_4192 ATP-dependent DNA helicase RecG — —
Phocaeicola dorei CL03T12C01 0.44 ABI39_RS10235 DNA helicase RecQ 0.33 ABI39_RS02470 ATP-dependent DNA helicase RecG low > 72
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.54 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS19925 DNA helicase RecQ 0.52 ABZR86_RS11840 ATP-dependent DNA helicase RecG low > 74
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.54 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Rhodanobacter denitrificans MT42 0.44 LRK55_RS12700 DNA helicase RecQ 0.51 LRK55_RS11530 ATP-dependent DNA helicase RecG low > 63
Marinobacter adhaerens HP15 0.44 HP15_1718 ATP-dependent DNA helicase RecQ 0.54 HP15_309 DNA helicase, ATP-dependent, RecG low > 73
Agrobacterium fabrum C58 0.44 Atu0061 ATP-dependent DNA helicase 0.34 Atu1780 ATP-dependent DNA helicase low > 89
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_02375 recQ DNA helicase RecQ 0.51 OKGIIK_12090 recG ATP-dependent DNA helicase RecG low > 52
Rhizobium sp. OAE497 0.44 ABIE40_RS12745 DNA helicase RecQ 0.34 ABIE40_RS09300 ATP-dependent DNA helicase RecG low > 107
Pseudomonas sp. S08-1 0.43 OH686_20670 ATP-dependent DNA helicase RecQ 0.54 OH686_13505 ATP-dependent DNA helicase RecG low > 80
Echinicola vietnamensis KMM 6221, DSM 17526 0.43 Echvi_0784 ATP-dependent DNA helicase RecQ 0.32 Echvi_1162 ATP-dependent DNA helicase RecG 0.27 78
Variovorax sp. OAS795 0.43 ABID97_RS03395 DNA helicase RecQ 0.40 ABID97_RS01575 ATP-dependent DNA helicase RecG low > 91
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS19310 ATP-dependent DNA helicase RecQ 0.44 RR42_RS17390 ATP-dependent DNA helicase RecG low > 128
Azospirillum brasilense Sp245 0.42 AZOBR_RS02840 ATP-dependent DNA helicase RecQ 0.33 AZOBR_RS09850 ATP-dependent DNA helicase RecG 0.59 15
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 74
Magnetospirillum magneticum AMB-1 0.42 AMB_RS21505 DNA helicase RecQ 0.33 AMB_RS12400 ATP-dependent DNA helicase RecG — —
Sinorhizobium meliloti 1021 0.42 SMc01566 ATP-dependent DNA helicase 0.33 SMc00228 ATP-dependent DNA helicase RecG low > 103
Bacteroides stercoris CC31F 0.42 HMPREF1181_RS14110 DNA helicase RecQ 0.32 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG low > 56
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS02880 DNA helicase RecQ 0.44 ABZR87_RS01270 ATP-dependent DNA helicase RecG low > 80
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS18145 ATP-dependent DNA helicase RecQ 0.45 BPHYT_RS03400 ATP-dependent DNA helicase RecG low > 109
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS28295 DNA helicase RecQ 0.45 QEN71_RS26630 ATP-dependent DNA helicase RecG — —
Paraburkholderia graminis OAS925 0.42 ABIE53_003792 ATP-dependent DNA helicase RecQ 0.45 ABIE53_000833 ATP-dependent DNA helicase RecG low > 113
Phaeobacter inhibens DSM 17395 0.42 PGA1_c31900 ATP-dependent DNA helicase RecQ 0.34 PGA1_c14380 ATP-dependent DNA helicase RecG low > 62
Rhodopseudomonas palustris CGA009 0.42 TX73_025080 DNA helicase RecQ 0.30 TX73_013795 ATP-dependent DNA helicase RecG low > 86
Azospirillum sp. SherDot2 0.42 MPMX19_00123 ATP-dependent DNA helicase RecQ 0.34 MPMX19_00951 ATP-dependent DNA helicase RecG — —
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_06595 ATP-dependent DNA helicase RecQ 0.45 H281DRAFT_04672 ATP-dependent DNA helicase RecG — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS07220 DNA helicase RecQ 0.44 RALBFv3_RS05675 DNA helicase RecG low > 76
Ralstonia solanacearum UW163 0.41 UW163_RS06400 DNA helicase RecQ 0.44 UW163_RS07950 DNA helicase RecG — —
Bacteroides thetaiotaomicron VPI-5482 0.41 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) — —
Dinoroseobacter shibae DFL-12 0.41 Dshi_3334 ATP-dependent DNA helicase RecQ (RefSeq) 0.32 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.57 9
Ralstonia solanacearum PSI07 0.41 RPSI07_RS10025 DNA helicase RecQ 0.44 RPSI07_RS11625 DNA helicase RecG low > 81
Ralstonia solanacearum GMI1000 0.41 RS_RS15155 DNA helicase RecQ 0.45 RS_RS13565 DNA helicase RecG — —
Lysobacter sp. OAE881 0.41 ABIE51_RS05145 DNA helicase RecQ 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG low > 62
Castellaniella sp019104865 MT123 0.41 ABCV34_RS07985 DNA helicase RecQ 0.43 ABCV34_RS03570 ATP-dependent DNA helicase RecG low > 48
Acidovorax sp. GW101-3H11 0.41 Ac3H11_3308 ATP-dependent DNA helicase RecQ 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 79
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS01195 DNA helicase RecQ 0.32 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF1958 ATP-dependent DNA helicase RecQ 0.41 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 90
Variovorax sp. SCN45 0.40 GFF6415 ATP-dependent DNA helicase RecQ 0.38 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) low > 127
Rhodospirillum rubrum S1H 0.40 Rru_A0089 ATP-dependent DNA helicase RecQ (NCBI) 0.30 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) — —
Bosea sp. OAE506 0.40 ABIE41_RS04160 DNA helicase RecQ 0.30 ABIE41_RS15815 ATP-dependent DNA helicase RecG low > 77
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS08905 DNA helicase RecQ 0.31 CA265_RS22835 ATP-dependent DNA helicase RecG low > 88
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_2261 ATP-dependent DNA helicase RecQ 0.30 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.36 A4249_RS14575 DNA helicase RecQ 0.28 A4249_RS04765 ATP-dependent DNA helicase RecG low > 48
Fusobacterium nucleatum SB010 0.34 HUW76_07235 DNA helicase RecQ 0.30 HUW76_01465 ATP-dependent DNA helicase RecG low > 35
Caulobacter crescentus NA1000 0.33 CCNA_03578 ATP-dependent DNA helicase recQ 0.31 CCNA_01504 ATP-dependent DNA helicase recG low > 66
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_03578 ATP-dependent DNA helicase recQ 0.31 CCNA_01504 ATP-dependent DNA helicase recG low > 67

Not shown: 2 genomes with orthologs for b3822 only; 4 genomes with orthologs for b3652 only