Conservation of cofitness between Rru_A0602 and Rru_A1111 in Rhodospirillum rubrum S1H

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodospirillum rubrum S1H 1.0 Rru_A0602 Phosphate uptake regulator, PhoU (NCBI) 1.0 Rru_A1111 Pseudouridine synthase, RluD (NCBI) 0.73 8
Azospirillum sp. SherDot2 0.61 MPMX19_04813 Phosphate-specific transport system accessory protein PhoU 0.47 MPMX19_05442 Ribosomal large subunit pseudouridine synthase D low > 112
Magnetospirillum magneticum AMB-1 0.56 AMB_RS06940 phosphate transport system regulatory protein PhoU 0.52 AMB_RS16095 RluA family pseudouridine synthase low > 64
Caulobacter crescentus NA1000 0.54 CCNA_00295 phosphate transport system protein phoU 0.41 CCNA_00485 ribosomal large subunit pseudouridine synthase D
Caulobacter crescentus NA1000 Δfur 0.54 CCNA_00295 phosphate transport system protein phoU 0.41 CCNA_00485 ribosomal large subunit pseudouridine synthase D
Brevundimonas sp. GW460-12-10-14-LB2 0.52 A4249_RS08975 phosphate signaling complex protein PhoU 0.45 A4249_RS10060 RluA family pseudouridine synthase
Bosea sp. OAE506 0.50 ABIE41_RS08905 phosphate signaling complex protein PhoU 0.40 ABIE41_RS05635 RluA family pseudouridine synthase low > 77
Rhodopseudomonas palustris CGA009 0.49 TX73_024825 phosphate signaling complex protein PhoU 0.40 TX73_001905 RluA family pseudouridine synthase
Xanthobacter sp. DMC5 0.48 GFF2341 Phosphate-specific transport system accessory protein PhoU 0.45 GFF2508 Ribosomal large subunit pseudouridine synthase D
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS00475 phosphate signaling complex protein PhoU 0.31 LRK54_RS04965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Rhodanobacter denitrificans MT42 0.48 LRK55_RS00215 phosphate signaling complex protein PhoU 0.31 LRK55_RS04745 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 63
Rhodanobacter sp. FW510-T8 0.48 OKGIIK_06835 phoU phosphate signaling complex protein PhoU 0.31 OKGIIK_01790 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Dyella japonica UNC79MFTsu3.2 0.47 ABZR86_RS08250 phosphate signaling complex protein PhoU 0.31 ABZR86_RS10965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Rhodanobacter sp000427505 FW510-R12 0.47 LRK53_RS09675 phosphate signaling complex protein PhoU 0.31 LRK53_RS05045 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Sphingobium sp. HT1-2 0.46 GFF2656 Phosphate transport system regulatory protein PhoU 0.41 GFF4062 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23)
Rhizobium sp. OAE497 0.46 ABIE40_RS02305 phosphate signaling complex protein PhoU 0.41 ABIE40_RS14790 RluA family pseudouridine synthase low > 107
Agrobacterium fabrum C58 0.45 Atu0424 phosphate transport system regulatory protein 0.41 Atu2443 ribosomal large subunit pseudouridine synthase, RluD subfamily
Sinorhizobium meliloti 1021 0.45 SMc02141 phosphate transporter PhoU 0.41 SMc00647 ribosomal large subunit pseudouridine synthase low > 103
Sphingomonas koreensis DSMZ 15582 0.45 Ga0059261_3652 phosphate transport system regulatory protein PhoU 0.43 Ga0059261_0664 pseudouridine synthase, RluA family low > 68
Dinoroseobacter shibae DFL-12 0.44 Dshi_1537 phosphate uptake regulator, PhoU (RefSeq) 0.34 Dshi_2610 pseudouridine synthase, RluA family (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.43 PGA1_c15740 phosphate transport system protein PhoU 0.38 PGA1_c09000 ribosomal large subunit pseudouridine synthase D low > 62
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.3364.1 Phosphate transport system regulatory protein PhoU 0.31 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 74
Lysobacter sp. OAE881 0.43 ABIE51_RS07525 phosphate signaling complex protein PhoU 0.31 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 62
Rahnella sp. WP5 0.34 EX31_RS06050 phosphate signaling complex protein PhoU 0.31 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Pectobacterium carotovorum WPP14 0.34 HER17_RS21695 phosphate signaling complex protein PhoU 0.32 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Klebsiella pneumoniae MKP103 0.34 KDGMDA_08755 phosphate signaling complex protein PhoU 0.32 KDGMDA_02140 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF1738 Phosphate transport system regulatory protein PhoU 0.31 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)
Dickeya dianthicola 67-19 0.33 HGI48_RS21580 phosphate signaling complex protein PhoU 0.32 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Dickeya dianthicola ME23 0.33 DZA65_RS22560 phosphate signaling complex protein PhoU 0.32 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Klebsiella michiganensis M5al 0.33 BWI76_RS00140 phosphate transport system regulator PhoU 0.32 BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase low > 92
Enterobacter asburiae PDN3 0.33 EX28DRAFT_4000 phosphate transport system regulatory protein PhoU 0.32 EX28DRAFT_2695 pseudouridine synthase, RluA family
Enterobacter sp. TBS_079 0.33 MPMX20_04643 Phosphate-specific transport system accessory protein PhoU 0.32 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D
Serratia liquefaciens MT49 0.33 IAI46_25195 phosphate signaling complex protein PhoU 0.32 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 86
Erwinia tracheiphila SCR3 0.33 LU632_RS24900 phoU phosphate signaling complex protein PhoU 0.32 LU632_RS16945 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Erwinia amylovora T8 0.33 OLJFJH_05210 phosphate signaling complex protein PhoU 0.31 OLJFJH_09725 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Erwinia tracheiphila HP pepo 2.2 0.33 IJEDHG_09565 phoU phosphate signaling complex protein PhoU 0.32 IJEDHG_26870 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Pantoea sp. MT58 0.33 IAI47_00215 phosphate signaling complex protein PhoU 0.31 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Pantoea agglomerans CFBP13505 P0401 0.33 PagCFBP13505_RS19120 phosphate signaling complex protein PhoU 0.31 PagCFBP13505_RS16540 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Escherichia coli ECOR27 0.33 NOLOHH_07030 pstA phosphate ABC transporter permease PstA 0.32 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Escherichia coli HS(pFamp)R (ATCC 700891) 0.33 OHPLBJKB_04329 Phosphate-specific transport system accessory protein PhoU 0.32 OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D
Escherichia coli BW25113 0.33 b3724 phoU negative regulator of PhoR/PhoB two-component regulator (NCBI) 0.32 b2594 rluD 23S rRNA pseudouridine synthase (NCBI)
Escherichia coli BL21 0.33 ECD_03608 negative regulator of PhoR/PhoB two-component regulator 0.32 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase
Escherichia coli ECRC62 0.33 BNILDI_04495 pstA phosphate ABC transporter permease PstA 0.32 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Pseudomonas stutzeri RCH2 0.32 Psest_0223 phosphate transport system regulatory protein PhoU 0.29 Psest_0709 pseudouridine synthase, RluA family
Escherichia fergusonii Becca 0.32 EFB2_04909 Phosphate-specific transport system accessory protein PhoU 0.32 EFB2_01296 Ribosomal large subunit pseudouridine synthase D
Escherichia coli ECRC98 0.32 JDDGAC_18520 phoU phosphate signaling complex protein PhoU 0.32 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Escherichia coli ECRC102 0.32 NIAGMN_12655 phoU phosphate signaling complex protein PhoU 0.32 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Pseudomonas aeruginosa PA14 0.32 IKLFDK_26630 phosphate signaling complex protein PhoU 0.30 IKLFDK_00810 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Escherichia coli Nissle 1917 0.32 ECOLIN_RS21430 phosphate signaling complex protein PhoU 0.32 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Escherichia coli ECRC101 0.32 MCAODC_05405 phoU phosphate signaling complex protein PhoU 0.32 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Escherichia coli ECRC100 0.32 OKFHMN_14900 phoU phosphate signaling complex protein PhoU 0.32 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Dickeya dadantii 3937 0.32 DDA3937_RS21450 phosphate signaling complex protein PhoU 0.32 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Pseudomonas segetis P6 0.32 MPMX49_00120 Phosphate-specific transport system accessory protein PhoU 0.29 MPMX49_03922 Ribosomal large subunit pseudouridine synthase D
Escherichia coli ECRC99 0.32 KEDOAH_13250 phoU phosphate signaling complex protein PhoU 0.32 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Pseudomonas sp. S08-1 0.32 OH686_13430 phosphate transport system regulatory protein PhoU 0.30 OH686_16410 LSU rRNA pseudouridine(1911/1915/1917) synthase low > 80
Escherichia coli ECOR38 0.32 HEPCGN_13610 phoU phosphate signaling complex protein PhoU 0.32 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_5037 phosphate uptake regulator, PhoU 0.30 Psyr_0726 ribosomal large subunit pseudouridine synthase D
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_5037 phosphate uptake regulator, PhoU 0.30 Psyr_0726 ribosomal large subunit pseudouridine synthase D
Ralstonia solanacearum GMI1000 0.32 RS_RS07690 phosphate transport system regulatory protein PhoU 0.32 RS_RS08205 RluA family pseudouridine synthase low > 80
Pseudomonas sp. BP01 0.32 JOY50_RS08875 phoU phosphate signaling complex protein PhoU 0.30 JOY50_RS27130 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD
Variovorax sp. SCN45 0.32 GFF1096 Phosphate transport system regulatory protein PhoU 0.31 GFF988 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) low > 127
Pseudomonas putida KT2440 0.32 PP_5325 phosphate transport-associated protein 0.31 PP_0623 23S rRNA pseudouridine(1911,1915,1917) synthase
Ralstonia solanacearum UW163 0.32 UW163_RS15440 phosphate transport system regulatory protein PhoU 0.32 UW163_RS14830 RluA family pseudouridine synthase
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_2038 Phosphate transport system regulatory protein PhoU 0.30 Pf1N1B4_2822 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)
Pseudomonas sp. SVBP6 0.32 COO64_RS01695 phoU phosphate signaling complex protein PhoU 0.30 COO64_RS11055 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 93
Ralstonia solanacearum PSI07 0.32 RPSI07_RS15315 phosphate transport system regulatory protein PhoU 0.32 RPSI07_RS15970 RluA family pseudouridine synthase low > 81
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_09885 transcriptional regulator PhoU 0.30 AO353_14220 ribosomal large subunit pseudouridine synthase D low > 101
Ralstonia solanacearum IBSBF1503 0.32 RALBFv3_RS02130 phosphate transport system regulatory protein PhoU 0.32 RALBFv3_RS01520 RluA family pseudouridine synthase low > 76
Variovorax sp. OAS795 0.32 ABID97_RS14615 phosphate signaling complex protein PhoU 0.30 ABID97_RS14190 RluA family pseudouridine synthase low > 91
Pseudomonas sp. DMC3 0.32 GFF475 Phosphate-specific transport system accessory protein PhoU 0.30 GFF4004 Ribosomal large subunit pseudouridine synthase D
Pseudomonas lactucae CFBP13502 0.32 GEMAOFIL_00079 Phosphate-specific transport system accessory protein PhoU 0.30 GEMAOFIL_00969 Ribosomal large subunit pseudouridine synthase D low > 93
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4071 Phosphate transport system regulatory protein PhoU 0.30 Pf6N2E2_5127 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)
Pseudomonas sp. RS175 0.32 PFR28_04485 Phosphate-specific transport system accessory protein PhoU 0.30 PFR28_03748 Ribosomal large subunit pseudouridine synthase D low > 88
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_11025 transcriptional regulator PhoU 0.31 AO356_15925 ribosomal large subunit pseudouridine synthase D low > 104
Pseudomonas fluorescens SBW25 0.31 PFLU_RS29750 phosphate signaling complex protein PhoU 0.30 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 109
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS29750 phosphate signaling complex protein PhoU 0.30 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 109
Pseudomonas simiae WCS417 0.31 PS417_28065 transcriptional regulator PhoU 0.30 PS417_03820 ribosomal large subunit pseudouridine synthase D
Ralstonia sp. UNC404CL21Col 0.31 ABZR87_RS14080 phosphate signaling complex protein PhoU 0.30 ABZR87_RS13315 RluA family pseudouridine synthase low > 80
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_757 Phosphate transport system regulatory protein PhoU 0.30 PfGW456L13_1493 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)
Acidovorax sp. GW101-3H11 0.31 Ac3H11_460 Phosphate transport system regulatory protein PhoU 0.32 Ac3H11_1787 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 79
Kangiella aquimarina DSM 16071 0.31 B158DRAFT_0894 phosphate uptake regulator, PhoU 0.36 B158DRAFT_2532 Pseudouridylate synthases, 23S RNA-specific low > 40
Marinobacter adhaerens HP15 0.31 HP15_3385 phosphate uptake regulator, PhoU 0.33 HP15_527 pseudouridine synthase, RluA family
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS13450 PhoU family transcriptional regulator 0.32 RR42_RS07590 pseudouridine synthase low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.29 GFF4234 Phosphate transport system regulatory protein PhoU 0.29 GFF4870 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 90
Shewanella sp. ANA-3 0.29 Shewana3_2731 transcriptional regulator PhoU (RefSeq) 0.32 Shewana3_3171 ribosomal large subunit pseudouridine synthase D (RefSeq)
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_03800 phosphate transport system regulator PhoU 0.33 CSW01_03695 ribosomal large subunit pseudouridine synthase D
Shewanella amazonensis SB2B 0.29 Sama_1411 transcriptional regulator PhoU (RefSeq) 0.32 Sama_2605 pseudouridylate synthase (RefSeq)
Castellaniella sp019104865 MT123 0.28 ABCV34_RS02395 phosphate signaling complex protein PhoU 0.26 ABCV34_RS01885 RluA family pseudouridine synthase
Shewanella loihica PV-4 0.28 Shew_1701 transcriptional regulator PhoU (RefSeq) 0.33 Shew_2950 RluA family pseudouridine synthase (RefSeq)
Acinetobacter radioresistens SK82 0.28 MPMX26_00183 Phosphate-specific transport system accessory protein PhoU 0.29 MPMX26_00735 Ribosomal large subunit pseudouridine synthase D low > 36
Methanococcus maripaludis JJ 0.25 MMJJ_RS08670 phosphate signaling complex protein PhoU 0.24 MMJJ_RS09155 RluA family pseudouridine synthase low > 28
Methanococcus maripaludis S2 0.25 MMP_RS05680 phosphate signaling complex protein PhoU 0.24 MMP_RS05225 RluA family pseudouridine synthase low > 25
Alteromonas macleodii MIT1002 0.21 MIT1002_00877 Repressor protein PhoU 0.33 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D low > 70
Synechocystis sp000284455 PCC 6803 0.21 SGL_RS02460 phosphate signaling complex protein PhoU 0.36 SGL_RS11530 RluA family pseudouridine synthase low > 52
Phocaeicola vulgatus CL09T03C04 0.20 HMPREF1058_RS06565 phosphate signaling complex protein PhoU 0.33 HMPREF1058_RS08615 RluA family pseudouridine synthase low > 67
Phocaeicola dorei CL03T12C01 0.20 ABI39_RS20360 phosphate signaling complex protein PhoU 0.32 ABI39_RS02845 RluA family pseudouridine synthase low > 72
Bacteroides thetaiotaomicron VPI-5482 0.19 BT1320 putative transcriptional regulator, phosphate uptake regulation (NCBI ptt file) 0.31 BT3712 ribosomal large subunit pseudouridine synthase D (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.19 HMPREF1078_RS17190 phosphate signaling complex protein PhoU 0.32 HMPREF1078_RS12640 RluA family pseudouridine synthase low > 61
Synechococcus elongatus PCC 7942 0.18 Synpcc7942_1912 phoU phosphate uptake regulator, PhoU 0.38 Synpcc7942_1112 ribosomal large subunit pseudouridine synthase D
Bifidobacterium breve UCC2003 0.18 BBR_RS18585 phosphate transport system regulatory protein PhoU 0.18 BBR_RS17135 RluA family pseudouridine synthase
Pontibacter actiniarum KMM 6156, DSM 19842 0.18 CA264_18725 phosphate transport system regulatory protein PhoU 0.36 CA264_15205 RNA pseudouridine synthase low > 74

Not shown: 11 genomes with orthologs for Rru_A0602 only; 9 genomes with orthologs for Rru_A1111 only