| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodospirillum rubrum S1H | 1.0 | Rru_A0602 | | Phosphate uptake regulator, PhoU (NCBI) | 1.0 | Rru_A0575 | | Peptidase U62, modulator of DNA gyrase (NCBI) | 0.73 | 9 |
| Azospirillum sp. SherDot2 | 0.61 | MPMX19_04813 | | Phosphate-specific transport system accessory protein PhoU | 0.60 | MPMX19_01886 | | Metalloprotease PmbA | low | > 112 |
| Magnetospirillum magneticum AMB-1 | 0.56 | AMB_RS06940 | | phosphate transport system regulatory protein PhoU | 0.63 | AMB_RS22120 | | TldD/PmbA family protein | low | > 64 |
| Caulobacter crescentus NA1000 Δfur | 0.54 | CCNA_00295 | | phosphate transport system protein phoU | 0.40 | CCNA_00311 | | Zn-dependent protease family protein | — | — |
| Caulobacter crescentus NA1000 | 0.54 | CCNA_00295 | | phosphate transport system protein phoU | 0.40 | CCNA_00311 | | Zn-dependent protease family protein | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.52 | A4249_RS08975 | | phosphate signaling complex protein PhoU | 0.38 | A4249_RS09195 | | TldD/PmbA family protein | — | — |
| Rhodopseudomonas palustris CGA009 | 0.49 | TX73_024825 | | phosphate signaling complex protein PhoU | 0.50 | TX73_005930 | | TldD/PmbA family protein | — | — |
| Rhodanobacter denitrificans MT42 | 0.48 | LRK55_RS00215 | | phosphate signaling complex protein PhoU | 0.30 | LRK55_RS03125 | | metalloprotease PmbA | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.48 | OKGIIK_06835 | phoU | phosphate signaling complex protein PhoU | 0.30 | OKGIIK_10260 | pmbA | metalloprotease PmbA | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.48 | LRK54_RS00475 | | phosphate signaling complex protein PhoU | 0.29 | LRK54_RS03375 | | metalloprotease PmbA | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.47 | ABZR86_RS08250 | | phosphate signaling complex protein PhoU | 0.32 | ABZR86_RS21700 | | metalloprotease PmbA | low | > 74 |
| Rhizobium sp. OAE497 | 0.46 | ABIE40_RS02305 | | phosphate signaling complex protein PhoU | 0.39 | ABIE40_RS03780 | | TldD/PmbA family protein | 0.51 | 75 |
| Agrobacterium fabrum C58 | 0.45 | Atu0424 | | phosphate transport system regulatory protein | 0.41 | Atu0693 | | PmbA/TldD related protein | — | — |
| Sinorhizobium meliloti 1021 | 0.45 | SMc02141 | | phosphate transporter PhoU | 0.41 | SMc00897 | | PMBA protein | low | > 103 |
| Azospirillum brasilense Sp245 | 0.45 | AZOBR_RS08185 | | PhoU family transcriptional regulator | 0.61 | AZOBR_RS11930 | | modulator protein | low | > 97 |
| Sphingomonas koreensis DSMZ 15582 | 0.45 | Ga0059261_3652 | | phosphate transport system regulatory protein PhoU | 0.46 | Ga0059261_0810 | | Predicted Zn-dependent proteases and their inactivated homologs | low | > 68 |
| Dinoroseobacter shibae DFL-12 | 0.44 | Dshi_1537 | | phosphate uptake regulator, PhoU (RefSeq) | 0.39 | Dshi_0064 | | peptidase U62 modulator of DNA gyrase (RefSeq) | low | > 64 |
| Phaeobacter inhibens DSM 17395 | 0.43 | PGA1_c15740 | | phosphate transport system protein PhoU | 0.44 | PGA1_c33480 | | protein PmbA | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.43 | Xcc-8004.3364.1 | | Phosphate transport system regulatory protein PhoU | 0.31 | Xcc-8004.1885.1 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 74 |
| Lysobacter sp. OAE881 | 0.43 | ABIE51_RS07525 | | phosphate signaling complex protein PhoU | 0.26 | ABIE51_RS06805 | | metalloprotease PmbA | low | > 62 |
| Dechlorosoma suillum PS | 0.35 | Dsui_1573 | | phosphate transport system regulatory protein PhoU | 0.31 | Dsui_1234 | | putative Zn-dependent protease-like protein | — | — |
| Rahnella sp. WP5 | 0.34 | EX31_RS06050 | | phosphate signaling complex protein PhoU | 0.32 | EX31_RS12320 | | metalloprotease PmbA | — | — |
| Pectobacterium carotovorum WPP14 | 0.34 | HER17_RS21695 | | phosphate signaling complex protein PhoU | 0.31 | HER17_RS20090 | | metalloprotease PmbA | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.33 | GFF1738 | | Phosphate transport system regulatory protein PhoU | 0.31 | GFF904 | | TldE protein, part of TldE/TldD proteolytic complex | — | — |
| Serratia liquefaciens MT49 | 0.33 | IAI46_25195 | | phosphate signaling complex protein PhoU | 0.30 | IAI46_22575 | | metalloprotease PmbA | low | > 86 |
| Dickeya dianthicola 67-19 | 0.33 | HGI48_RS21580 | | phosphate signaling complex protein PhoU | 0.29 | HGI48_RS01415 | | metalloprotease PmbA | — | — |
| Enterobacter sp. TBS_079 | 0.33 | MPMX20_04643 | | Phosphate-specific transport system accessory protein PhoU | 0.31 | MPMX20_00517 | | Metalloprotease PmbA | — | — |
| Enterobacter asburiae PDN3 | 0.33 | EX28DRAFT_4000 | | phosphate transport system regulatory protein PhoU | 0.31 | EX28DRAFT_3422 | | Predicted Zn-dependent proteases and their inactivated homologs | — | — |
| Klebsiella michiganensis M5al | 0.33 | BWI76_RS00140 | | phosphate transport system regulator PhoU | 0.30 | BWI76_RS02850 | | metalloprotease PmbA | low | > 92 |
| Dickeya dianthicola ME23 | 0.33 | DZA65_RS22560 | | phosphate signaling complex protein PhoU | 0.29 | DZA65_RS01480 | | metalloprotease PmbA | — | — |
| Erwinia tracheiphila SCR3 | 0.33 | LU632_RS24900 | phoU | phosphate signaling complex protein PhoU | 0.28 | LU632_RS02145 | pmbA | metalloprotease PmbA | — | — |
| Pantoea sp. MT58 | 0.33 | IAI47_00215 | | phosphate signaling complex protein PhoU | 0.30 | IAI47_02765 | | metalloprotease PmbA | — | — |
| Escherichia coli ECOR27 | 0.33 | NOLOHH_07030 | pstA | phosphate ABC transporter permease PstA | 0.30 | NOLOHH_04185 | pmbA | metalloprotease PmbA | — | — |
| Escherichia coli BW25113 | 0.33 | b3724 | phoU | negative regulator of PhoR/PhoB two-component regulator (NCBI) | 0.30 | b4235 | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.33 | OHPLBJKB_04329 | | Phosphate-specific transport system accessory protein PhoU | 0.30 | OHPLBJKB_03800 | | Metalloprotease PmbA | — | — |
| Escherichia coli BL21 | 0.33 | ECD_03608 | | negative regulator of PhoR/PhoB two-component regulator | 0.30 | ECD_04103 | | putative antibiotic peptide MccB17 maturation peptidase | — | — |
| Escherichia coli ECRC62 | 0.33 | BNILDI_04495 | pstA | phosphate ABC transporter permease PstA | 0.30 | BNILDI_07325 | pmbA | metalloprotease PmbA | — | — |
| Escherichia coli ECRC98 | 0.32 | JDDGAC_18520 | phoU | phosphate signaling complex protein PhoU | 0.30 | JDDGAC_15565 | pmbA | metalloprotease PmbA | — | — |
| Escherichia coli ECRC102 | 0.32 | NIAGMN_12655 | phoU | phosphate signaling complex protein PhoU | 0.30 | NIAGMN_09775 | pmbA | metalloprotease PmbA | — | — |
| Dickeya dadantii 3937 | 0.32 | DDA3937_RS21450 | | phosphate signaling complex protein PhoU | 0.29 | DDA3937_RS01500 | | metalloprotease PmbA | — | — |
| Pseudomonas stutzeri RCH2 | 0.32 | Psest_0223 | | phosphate transport system regulatory protein PhoU | 0.24 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | — | — |
| Escherichia coli ECRC101 | 0.32 | OKFHMN_14900 | phoU | phosphate signaling complex protein PhoU | 0.30 | OKFHMN_11925 | pmbA | metalloprotease PmbA | — | — |
| Escherichia coli ECRC99 | 0.32 | KEDOAH_13250 | phoU | phosphate signaling complex protein PhoU | 0.30 | KEDOAH_16230 | pmbA | metalloprotease PmbA | — | — |
| Escherichia fergusonii Becca | 0.32 | EFB2_04909 | | Phosphate-specific transport system accessory protein PhoU | 0.30 | EFB2_04298 | | Metalloprotease PmbA | — | — |
| Escherichia coli ECOR38 | 0.32 | HEPCGN_13610 | phoU | phosphate signaling complex protein PhoU | 0.30 | HEPCGN_10125 | pmbA | metalloprotease PmbA | — | — |
| Pseudomonas sp. S08-1 | 0.32 | OH686_13430 | | phosphate transport system regulatory protein PhoU | 0.25 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 80 |
| Escherichia coli ECRC101 | 0.32 | MCAODC_05405 | phoU | phosphate signaling complex protein PhoU | 0.30 | MCAODC_02430 | pmbA | metalloprotease PmbA | — | — |
| Escherichia coli Nissle 1917 | 0.32 | ECOLIN_RS21430 | | phosphate signaling complex protein PhoU | 0.30 | ECOLIN_RS24570 | | metalloprotease PmbA | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.32 | Psyr_5037 | | phosphate uptake regulator, PhoU | 0.22 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.32 | Psyr_5037 | | phosphate uptake regulator, PhoU | 0.22 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | — | — |
| Variovorax sp. SCN45 | 0.32 | GFF1096 | | Phosphate transport system regulatory protein PhoU | 0.28 | GFF4697 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 127 |
| Pseudomonas putida KT2440 | 0.32 | PP_5325 | | phosphate transport-associated protein | 0.24 | PP_0942 | | regulatory protease | — | — |
| Ralstonia solanacearum GMI1000 | 0.32 | RS_RS07690 | | phosphate transport system regulatory protein PhoU | 0.25 | RS_RS04700 | | metalloprotease PmbA | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.32 | AO353_09885 | | transcriptional regulator PhoU | 0.25 | AO353_05205 | | peptidase PmbA | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.32 | Pf1N1B4_2038 | | Phosphate transport system regulatory protein PhoU | 0.24 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | — | — |
| Ralstonia solanacearum PSI07 | 0.32 | RPSI07_RS15315 | | phosphate transport system regulatory protein PhoU | 0.27 | RPSI07_RS19505 | | metalloprotease PmbA | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.32 | RALBFv3_RS02130 | | phosphate transport system regulatory protein PhoU | 0.28 | RALBFv3_RS13965 | | metalloprotease PmbA | low | > 76 |
| Ralstonia solanacearum UW163 | 0.32 | UW163_RS15440 | | phosphate transport system regulatory protein PhoU | 0.28 | UW163_RS15845 | | metalloprotease PmbA | — | — |
| Variovorax sp. OAS795 | 0.32 | ABID97_RS14615 | | phosphate signaling complex protein PhoU | 0.29 | ABID97_RS20695 | | metalloprotease PmbA | low | > 91 |
| Pseudomonas fluorescens FW300-N2E2 | 0.32 | Pf6N2E2_4071 | | Phosphate transport system regulatory protein PhoU | 0.24 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 103 |
| Pseudomonas sp. RS175 | 0.32 | PFR28_04485 | | Phosphate-specific transport system accessory protein PhoU | 0.25 | PFR28_00163 | | Metalloprotease PmbA | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.32 | AO356_11025 | | transcriptional regulator PhoU | 0.24 | AO356_07085 | | peptidase PmbA | low | > 104 |
| Pseudomonas fluorescens SBW25 | 0.31 | PFLU_RS29750 | | phosphate signaling complex protein PhoU | 0.25 | PFLU_RS04350 | | metalloprotease PmbA | 0.62 | 32 |
| Pseudomonas simiae WCS417 | 0.31 | PS417_28065 | | transcriptional regulator PhoU | 0.24 | PS417_04295 | | peptidase PmbA | — | — |
| Ralstonia sp. UNC404CL21Col | 0.31 | ABZR87_RS14080 | | phosphate signaling complex protein PhoU | 0.27 | ABZR87_RS09660 | | metalloprotease PmbA | low | > 80 |
| Pseudomonas fluorescens SBW25-INTG | 0.31 | PFLU_RS29750 | | phosphate signaling complex protein PhoU | 0.25 | PFLU_RS04350 | | metalloprotease PmbA | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.31 | PfGW456L13_757 | | Phosphate transport system regulatory protein PhoU | 0.25 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 87 |
| Herbaspirillum seropedicae SmR1 | 0.31 | HSERO_RS06330 | | transcriptional regulator | 0.26 | HSERO_RS09265 | | peptidase C69 | low | > 78 |
| Kangiella aquimarina DSM 16071 | 0.31 | B158DRAFT_0894 | | phosphate uptake regulator, PhoU | 0.24 | B158DRAFT_2075 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | low | > 40 |
| Acidovorax sp. GW101-3H11 | 0.31 | Ac3H11_460 | | Phosphate transport system regulatory protein PhoU | 0.26 | Ac3H11_3262 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 79 |
| Paraburkholderia graminis OAS925 | 0.31 | ABIE53_002991 | | phosphate transport system protein | 0.28 | ABIE53_003116 | | PmbA protein | low | > 113 |
| Cupriavidus basilensis FW507-4G11 | 0.30 | RR42_RS13450 | | PhoU family transcriptional regulator | 0.28 | RR42_RS14750 | | peptidase PMbA | 0.33 | 56 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.30 | H281DRAFT_04415 | | phosphate uptake regulator, PhoU | 0.27 | H281DRAFT_04304 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.30 | BPHYT_RS14125 | | transcriptional regulator | 0.27 | BPHYT_RS14705 | | peptidase C69 | low | > 109 |
| Shewanella sp. ANA-3 | 0.29 | Shewana3_2731 | | transcriptional regulator PhoU (RefSeq) | 0.30 | Shewana3_3631 | | microcin-processing peptidase 1 (RefSeq) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.29 | GFF4234 | | Phosphate transport system regulatory protein PhoU | 0.25 | GFF3655 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 90 |
| Vibrio cholerae E7946 ATCC 55056 | 0.29 | CSW01_03800 | | phosphate transport system regulator PhoU | 0.27 | CSW01_12845 | | metalloprotease PmbA | — | — |
| Shewanella amazonensis SB2B | 0.29 | Sama_1411 | | transcriptional regulator PhoU (RefSeq) | 0.29 | Sama_0482 | | PmbA protein (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.29 | SO1726 | phoU | phosphate transport system regulatory protein PhoU (NCBI ptt file) | 0.29 | SO4078 | pmbA | pmba protein (NCBI ptt file) | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.29 | QEN71_RS04840 | | phosphate signaling complex protein PhoU | 0.26 | QEN71_RS04270 | | metalloprotease PmbA | low | > 153 |
| Castellaniella sp019104865 MT123 | 0.28 | ABCV34_RS02395 | | phosphate signaling complex protein PhoU | 0.27 | ABCV34_RS10610 | | metalloprotease PmbA | — | — |
| Shewanella loihica PV-4 | 0.28 | Shew_1701 | | transcriptional regulator PhoU (RefSeq) | 0.28 | Shew_0416 | | peptidase U62, modulator of DNA gyrase (RefSeq) | — | — |
| Methanococcus maripaludis JJ | 0.25 | MMJJ_RS08670 | | phosphate signaling complex protein PhoU | 0.14 | MMJJ_RS06520 | | TldD/PmbA family protein | low | > 28 |
| Methanococcus maripaludis S2 | 0.25 | MMP_RS05680 | | phosphate signaling complex protein PhoU | 0.13 | MMP_RS07835 | | TldD/PmbA family protein | low | > 25 |
| Alteromonas macleodii MIT1002 | 0.21 | MIT1002_00877 | | Repressor protein PhoU | 0.28 | MIT1002_00230 | | peptidase PmbA | low | > 70 |
| Parabacteroides merdae CL09T00C40 | 0.19 | HMPREF1078_RS17190 | | phosphate signaling complex protein PhoU | 0.17 | HMPREF1078_RS03625 | | TldD/PmbA family protein | low | > 61 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.19 | BT1320 | | putative transcriptional regulator, phosphate uptake regulation (NCBI ptt file) | 0.17 | BT3649 | | putative modulator of DNA gyrase (NCBI ptt file) | low | > 81 |
| Synechococcus elongatus PCC 7942 | 0.18 | Synpcc7942_1912 | phoU | phosphate uptake regulator, PhoU | 0.10 | Synpcc7942_1589 | pmbA | putative modulator of DNA gyrase | — | — |
Not shown: 9 genomes with orthologs for Rru_A0602 only; 1 genomes with orthologs for Rru_A0575 only