| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Pseudomonas syringae pv. syringae B728a | Psyr_4887 | | Peptidase S41A, C-terminal protease | strong | 100 | 100 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_4887 | | Peptidase S41A, C-terminal protease | strong | 100 | 100 |
| o | Pseudomonas sp. SVBP6 | COO64_RS13285 | | S41 family peptidase | cofit | 86 | 100 |
| o | Pseudomonas sp. DMC3 | GFF4091 | | Carboxy-terminal processing protease CtpB | cofit | 85 | 100 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_1619 | | Carboxyl-terminal protease (EC 3.4.21.102) | strong | 84 | 100 |
| o | Pseudomonas fluorescens GW456-L13 | PfGW456L13_355 | | Carboxyl-terminal protease (EC 3.4.21.102) | strong | 83 | 100 |
| o | Pseudomonas sp. BP01 | JOY50_RS09410 | | S41 family peptidase | insig. | 84 | 100 |
| o | Pseudomonas putida KT2440 | PP_5058 | | Carboxy-terminal-processing protease | strong | 83 | 100 |
| o | Pseudomonas sp. RS175 | PFR28_04936 | | Carboxy-terminal processing protease CtpB | strong | 83 | 100 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_00539 | | hypothetical protein | cofit | 84 | 100 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_09780 | | peptidase S41 | strong | 84 | 100 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3835 | | Carboxyl-terminal protease (EC 3.4.21.102) | strong | 84 | 100 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS01645 | | S41 family peptidase | strong | 84 | 100 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS01645 | | S41 family peptidase | strong | 84 | 100 |
| o | Pseudomonas simiae WCS417 | PS417_01595 | | peptidase S41 | no data | 83 | 100 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_12105 | | peptidase S41 | strong | 81 | 100 |
| o | Pseudomonas segetis P6 | MPMX49_04296 | | Carboxy-terminal processing protease CtpB | strong | 78 | 100 |
| o | Pseudomonas sp. S08-1 | OH686_14645 | | Carboxyl-terminal protease | strong | 76 | 100 |
| o | Pseudomonas stutzeri RCH2 | Psest_0160 | | C-terminal peptidase (prc) | no data | 75 | 100 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_27835 | | proteolytic complex protein CptA | strong | 82 | 89 |
| o | Marinobacter adhaerens HP15 | HP15_3007 | | carboxyl-terminal protease family protein | sig. | 54 | 100 |
| o | Methylophilus sp. DMC18 | GFF2561 | | hypothetical protein | no data | 49 | 91 |
| o | Dechlorosoma suillum PS | Dsui_1270 | | C-terminal processing peptidase | no data | 54 | 89 |
| o | Magnetospirillum magneticum AMB-1 | AMB_RS01535 | | S41 family peptidase | no data | 50 | 87 |
| | Azospirillum sp. SherDot2 | MPMX19_01937 | | hypothetical protein | cofit | 55 | 80 |
| o | Rhodospirillum rubrum S1H | Rru_A1232 | | C-terminal processing peptidase S41A (NCBI) | no data | 51 | 87 |
| | Azospirillum brasilense Sp245 | AZOBR_RS04035 | | peptidase S41 | strong | 52 | 82 |
| o | Herbaspirillum seropedicae SmR1 | HSERO_RS00830 | | peptidase S41 | no data | 50 | 91 |
| o | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS13350 | | S41 family peptidase | strong | 49 | 90 |
| o | Rhodanobacter denitrificans MT42 | LRK55_RS10655 | | S41 family peptidase | strong | 50 | 92 |
| o | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS10950 | | S41 family peptidase | strong | 50 | 92 |
| o | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS03740 | | S41 family peptidase | cofit | 49 | 93 |
| o | Rhodanobacter sp. FW510-T8 | OKGIIK_12920 | ctpA | C-terminal processing protease CtpA/Prc, contains a PDZ domain | cofit | 50 | 88 |
| o | Dinoroseobacter shibae DFL-12 | Dshi_0091 | | carboxyl-terminal protease (RefSeq) | strong | 49 | 87 |
| o | Agrobacterium fabrum C58 | Atu2774 | | carboxy-terminal protease | no data | 48 | 91 |
| o | Rhodopseudomonas palustris CGA009 | TX73_000880 | | S41 family peptidase | no data | 47 | 98 |
| o | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02005 | | carboxyl-terminal processing protease | no data | 48 | 88 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.28.1 | | Carboxyl-terminal protease (EC 3.4.21.102) | sig. | 50 | 82 |
| o | Burkholderia phytofirmans PsJN | BPHYT_RS02585 | | peptidase S41 | no data | 48 | 89 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS01440 | | S41 family peptidase | strong | 47 | 90 |
| o | Sinorhizobium meliloti 1021 | SMc03783 | | carboxy-terminal processing protease precursor signal peptide protein | no data | 46 | 98 |
| o | Desulfovibrio vulgaris Miyazaki F | DvMF_3158 | | carboxyl-terminal protease (RefSeq) | no data | 49 | 87 |
| o | Rhizobium sp. OAE497 | ABIE40_RS18975 | | S41 family peptidase | strong | 48 | 87 |
| o | Paraburkholderia graminis OAS925 | ABIE53_000662 | | carboxyl-terminal processing protease | no data | 48 | 87 |
| o | Phaeobacter inhibens DSM 17395 | PGA1_c02790 | | putative carboxy-terminal-processing protease | strong | 47 | 92 |
| o | Acidovorax sp. GW101-3H11 | Ac3H11_3855 | | Carboxyl-terminal protease (EC 3.4.21.102) | no data | 45 | 88 |
| o | Xanthobacter sp. DMC5 | GFF3960 | | Carboxy-terminal processing protease CtpA | no data | 48 | 87 |
| o | Castellaniella sp019104865 MT123 | ABCV34_RS14280 | | S41 family peptidase | no data | 47 | 89 |
| o | Variovorax sp. SCN45 | GFF2568 | | Carboxyl-terminal protease (EC 3.4.21.102) | insig. | 46 | 88 |
| o | Ralstonia sp. UNC404CL21Col | ABZR87_RS06745 | | S41 family peptidase | strong | 45 | 89 |
| o | Variovorax sp. OAS795 | ABID97_RS07380 | | S41 family peptidase | strong | 46 | 88 |
| o | Sphingobium sp. HT1-2 | GFF754 | | Carboxyl-terminal protease (EC 3.4.21.102) | cofit | 46 | 93 |
| o | Ralstonia solanacearum GMI1000 | RS_RS01735 | | S41 family peptidase | sig. | 44 | 89 |
| o | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS10895 | | S41 family peptidase | strong | 44 | 89 |
| o | Ralstonia solanacearum UW163 | UW163_RS02685 | | S41 family peptidase | insig. | 44 | 89 |
| o | Ralstonia solanacearum PSI07 | RPSI07_RS22415 | | S41 family peptidase | strong | 44 | 89 |
| o | Caulobacter crescentus NA1000 | CCNA_03548 | | carboxy-terminal processing protease precursor | strong | 47 | 91 |
| o | Caulobacter crescentus NA1000 Δfur | CCNA_03548 | | carboxy-terminal processing protease precursor | strong | 47 | 91 |
| o | Cupriavidus basilensis FW507-4G11 | RR42_RS01820 | | peptidase S41 | strong | 44 | 89 |
| o | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF1227 | | Carboxyl-terminal protease (EC 3.4.21.102) | sig. | 43 | 88 |
| o | Desulfovibrio vulgaris Hildenborough JW710 | DVU2336 | | carboxyl-terminal protease (TIGR) | no data | 47 | 87 |
| | Rhodopseudomonas palustris CGA009 | TX73_003055 | | S41 family peptidase | insig. | 47 | 84 |
| o | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS14835 | | S41 family peptidase | insig. | 45 | 86 |
| o | Bosea sp. OAE506 | ABIE41_RS07555 | | S41 family peptidase | no data | 45 | 98 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_0704 | | C-terminal peptidase (prc) | strong | 47 | 74 |
| o | Sphingomonas koreensis DSMZ 15582 | Ga0059261_2501 | | C-terminal peptidase (prc) | strong | 46 | 86 |
| | Azospirillum brasilense Sp245 | AZOBR_RS20320 | | carboxyl-terminal protease | strong | 41 | 78 |
| | Azospirillum sp. SherDot2 | MPMX19_05725 | | hypothetical protein | sig. | 41 | 72 |
| | Shewanella oneidensis MR-1 | SO0047 | | carboxyl-terminal protease, putative (NCBI ptt file) | insig. | 41 | 71 |
| | Shewanella sp. ANA-3 | Shewana3_0049 | | C-terminal processing peptidase-3 (RefSeq) | insig. | 40 | 71 |
| | Shewanella loihica PV-4 | Shew_3808 | | carboxyl-terminal protease (RefSeq) | insig. | 42 | 71 |
| | Shewanella amazonensis SB2B | Sama_0058 | | C-terminal processing peptidase (RefSeq) | insig. | 42 | 72 |
| o | Fusobacterium nucleatum SB010 | HUW76_04230 | | S41 family peptidase | strong | 38 | 87 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_0712 | | C-terminal processing peptidase-2. Serine peptidase. MEROPS family S41A | strong | 43 | 71 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS06625 | | S41 family peptidase | no data | 44 | 67 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_18180 | | peptidase S41 | insig. | 37 | 80 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_2330 | ctpA | C-terminal processing peptidase-2. Serine peptidase. MEROPS family S41A | no data | 37 | 76 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_14690 | | peptidase S41 | sig. | 38 | 71 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS13410 | | S41 family peptidase | no data | 37 | 75 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS01460 | | S41 family peptidase | strong | 39 | 75 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_1883 | | C-terminal peptidase (prc) | strong | 37 | 82 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS02655 | | S41 family peptidase | strong | 42 | 64 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_02643 | | peptidase, S41 family | sig. | 40 | 67 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT3035 | | carboxy-terminal processing protease precursor (NCBI ptt file) | strong | 39 | 70 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS04475 | | S41 family peptidase | cofit | 38 | 67 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS05280 | | S41 family peptidase | strong | 40 | 70 |
| | Cellulophaga baltica 18 | M666_RS06035 | | S41 family peptidase | cofit | 36 | 80 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT2798 | | carboxy-terminal processing protease precursor (NCBI ptt file) | strong | 36 | 71 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS11625 | | S41 family peptidase | strong | 40 | 70 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_02023 | | peptidase, S41 family | strong | 36 | 71 |
| | Cellulophaga baltica 18 | M666_RS04850 | | S41 family peptidase | insig. | 38 | 71 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS21975 | | peptidase S41 | insig. | 38 | 70 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS13150 | | S41 family peptidase | sig. | 38 | 67 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS17415 | | S41 family peptidase | insig. | 39 | 68 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS00955 | | S41 family peptidase | sig. | 35 | 71 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS17150 | | S41 family peptidase | strong | 37 | 67 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT4259 | | carboxy-terminal processing protease precursor (NCBI ptt file) | no data | 34 | 82 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_1787 | | C-terminal peptidase (prc) | sig. | 34 | 70 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_0516 | ctpB | C-terminal processing peptidase-2. Serine peptidase. MEROPS family S41A | no data | 37 | 67 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_05092 | | peptidase, S41 family | strong | 33 | 82 |