Homologs of PP_4894 from Pseudomonas putida KT2440

RNA-binding protein Hfq
SEED: RNA-binding protein Hfq
KEGG: host factor-I protein

114 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_4894 RNA-binding protein Hfq no data 100 100
o Pseudomonas sp. BP01 JOY50_RS17230 hfq RNA chaperone Hfq insig. 97 100
o Pseudomonas sp. SVBP6 COO64_RS17900 hfq RNA chaperone Hfq no data 90 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1412 RNA-binding protein Hfq no data 90 100
o Pseudomonas fluorescens FW300-N2C3 AO356_08655 RNA-binding protein no data 90 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3614 RNA-binding protein Hfq no data 90 100
o Pseudomonas protegens RBAN4 FABNJH_02930 hfq RNA chaperone Hfq no data 88 100
o Pseudomonas fluorescens FW300-N2E3 AO353_13145 RNA-binding protein no data 88 100
o Pseudomonas sp. RS175 PFR28_05121 RNA-binding protein Hfq no data 88 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_154 RNA-binding protein Hfq no data 88 100
o Pseudomonas segetis P6 ACVTMO_RS20600 hfq RNA chaperone Hfq no data 86 100
o Pseudomonas syringae pv. syringae B728a Psyr_0572 RNA-binding protein Hfq no data 87 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0572 RNA-binding protein Hfq no data 87 100
o Pseudomonas sp. DMC3 GFF3220 RNA-binding protein Hfq no data 85 100
o Pseudomonas sp. S08-1 OH686_09470 RNA chaperone Hfq strong 87 100
o Pseudomonas stutzeri RCH2 Psest_0683 RNA chaperone Hfq no data 86 99
o Pseudomonas fluorescens SBW25 PFLU_RS02570 RNA chaperone Hfq no data 85 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS02570 RNA chaperone Hfq no data 85 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00736 RNA-binding protein Hfq no data 85 100
o Pseudomonas simiae WCS417 PS417_02490 RNA-binding protein Hfq no data 85 100
o Pseudomonas aeruginosa MRSN321 DY961_RS10510 hfq;go_function=RNA RNA chaperone Hfq no data 85 100
o Pseudomonas aeruginosa PA14 IKLFDK_28820 RNA chaperone Hfq no data 85 100
o Pseudomonas aeruginosa PUPa3 DQ20_RS51545 hfq;go_function=RNA RNA chaperone Hfq no data 85 100
o Pseudomonas orientalis W4I3 QF045_RS05550 RNA chaperone Hfq no data 86 100
o Alteromonas macleodii MIT1002 MIT1002_03788 Host factor-I protein strong 77 95
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS00630 RNA chaperone Hfq sig. 71 99
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF825 RNA-binding protein Hfq sig. 73 100
o Shewanella sp. ANA-3 Shewana3_0597 RNA-binding protein Hfq (RefSeq) no data 75 92
o Shewanella oneidensis MR-1 SO0603 hfq host factor-I protein (NCBI ptt file) strong 75 92
  Escherichia coli BL21 ECD_04039 global sRNA chaperone; HF-I, host factor for RNA phage Q beta replication strong 87 79
  Escherichia fergusonii Becca EFB2_04363 RNA-binding protein Hfq insig. 87 79
  Escherichia coli ECOR27 NOLOHH_04520 hfq RNA chaperone Hfq strong 87 79
  Escherichia coli ECOR38 HEPCGN_10485 hfq RNA chaperone Hfq sig. 87 79
  Escherichia coli ECRC100 OKFHMN_12255 hfq RNA chaperone Hfq cofit 87 79
  Escherichia coli ECRC101 MCAODC_02770 hfq RNA chaperone Hfq strong 87 79
  Escherichia coli ECRC102 NIAGMN_10105 hfq RNA chaperone Hfq strong 87 79
  Escherichia coli ECRC62 BNILDI_06970 hfq RNA chaperone Hfq strong 87 79
  Escherichia coli ECRC98 JDDGAC_15895 hfq RNA chaperone Hfq strong 87 79
  Escherichia coli ECRC99 KEDOAH_15900 hfq RNA chaperone Hfq no data 87 79
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03870 RNA-binding protein Hfq cofit 87 79
  Escherichia coli Nissle 1917 ECOLIN_RS24230 RNA chaperone Hfq cofit 87 79
  Escherichia coli BW25113 b4172 hfq RNA-binding protein Hfq (NCBI) strong 87 79
  Klebsiella michiganensis M5al BWI76_RS02535 RNA-binding protein Hfq no data 87 79
  Lysobacter sp. OAE881 ABIE51_RS06540 RNA chaperone Hfq strong 86 81
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3120.1 RNA-binding protein Hfq insig. 84 81
o Pectobacterium carotovorum WPP14 HER17_RS02585 RNA chaperone Hfq strong 75 92
o Klebsiella pneumoniae MKP103 KDGMDA_11035 RNA chaperone Hfq strong 70 100
o Klebsiella pneumoniae MRSN742743 KFA93_RS21065 hfq;go_function=RNA RNA chaperone Hfq strong 70 100
o Enterobacter asburiae PDN3 EX28DRAFT_3369 RNA chaperone Hfq sig. 69 100
o Enterobacter sp. TBS_079 MPMX20_00453 RNA-binding protein Hfq strong 69 100
  Dickeya dianthicola 67-19 HGI48_RS18545 RNA chaperone Hfq strong 87 79
  Dickeya dianthicola ME23 DZA65_RS19680 RNA chaperone Hfq sig. 87 79
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_06865 hfq RNA chaperone Hfq no data 87 79
  Erwinia tracheiphila SCR3 LU632_RS02055 hfq RNA chaperone Hfq no data 87 79
  Erwinia amylovora T8 OLJFJH_02500 RNA chaperone Hfq strong 87 79
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS02605 hfq RNA chaperone Hfq strong 87 79
  Rahnella sp. WP5 EX31_RS08820 RNA chaperone Hfq strong 87 79
  Shewanella loihica PV-4 Shew_0566 RNA chaperone Hfq (RefSeq) insig. 82 84
o Rhodanobacter sp. FW510-T8 OKGIIK_06630 hfq RNA chaperone Hfq strong 69 100
  Pantoea sp. MT58 IAI47_02590 RNA chaperone Hfq strong 87 79
  Vibrio cholerae E7946 ATCC 55056 CSW01_01835 RNA-binding protein Hfq no data 85 79
  Serratia liquefaciens MT49 IAI46_01625 RNA chaperone Hfq strong 82 88
  Shewanella amazonensis SB2B Sama_3025 host factor-I protein (RefSeq) no data 81 84
  Kangiella aquimarina DSM 16071 B158DRAFT_1952 RNA chaperone Hfq strong 87 80
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08365 RNA chaperone Hfq no data 83 81
o Rhodanobacter denitrificans MT42 LRK55_RS00400 RNA chaperone Hfq cofit 81 81
  Dickeya dadantii 3937 DDA3937_RS18610 RNA chaperone Hfq strong 85 79
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS09525 RNA chaperone Hfq insig. 81 81
o Dechlorosoma suillum PS Dsui_3137 RNA chaperone Hfq no data 78 88
  Acinetobacter radioresistens SK82 MPMX26_01209 RNA-binding protein Hfq cofit 84 80
  Acinetobacter baumannii LAC-4 RR41_RS07080 RNA chaperone Hfq no data 84 80
o Burkholderia phytofirmans PsJN BPHYT_RS12555 RNA-binding protein Hfq no data 75 94
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00521 RNA-binding protein Hfq no data 75 94
o Paraburkholderia graminis OAS925 ABIE53_002737 host factor-I protein no data 75 94
o Paraburkholderia sabiae LMG 24235 QEN71_RS06000 RNA chaperone Hfq no data 75 94
o Ralstonia solanacearum PSI07 RPSI07_RS18075 RNA-binding protein Hfq no data 77 87
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS15300 RNA-binding protein Hfq no data 75 87
o Ralstonia solanacearum GMI1000 RS_RS06110 RNA-binding protein Hfq no data 75 87
o Ralstonia solanacearum UW163 UW163_RS12765 RNA-binding protein Hfq no data 75 87
o Herbaspirillum seropedicae SmR1 HSERO_RS14775 RNA-binding protein Hfq no data 75 88
o Cupriavidus basilensis FW507-4G11 RR42_RS13115 RNA chaperone Hfq no data 75 88
o Methylophilus sp. DMC18 GFF1221 RNA-binding protein Hfq no data 77 83
o Castellaniella sp019104865 MT123 ABCV34_RS02650 RNA chaperone Hfq no data 74 88
o Variovorax sp. OAS795 ABID97_RS14250 RNA chaperone Hfq no data 71 88
o Variovorax sp. SCN45 GFF1000 RNA-binding protein Hfq no data 71 88
o Ralstonia sp. UNC404CL21Col ABZR87_RS10940 RNA chaperone Hfq no data 81 80
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4858 RNA-binding protein Hfq no data 70 97
o Acidovorax sp. GW101-3H11 Ac3H11_1799 RNA-binding protein Hfq no data 67 95
o Caulobacter crescentus NA1000 CCNA_01819 RNA-binding protein, Hfq family no data 56 84
o Caulobacter crescentus NA1000 Δfur CCNA_01819 RNA-binding protein, Hfq family no data 56 84
o Bosea sp. OAE506 ABIE41_RS16770 RNA chaperone Hfq no data 51 88
  Xanthobacter sp. DMC5 GFF841 RNA-binding protein Hfq insig. 55 85
o Phaeobacter inhibens DSM 17395 PGA1_c14850 protein hfq (RNA chaperone hfq) no data 55 87
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04830 RNA chaperone Hfq no data 54 87
o Rhodospirillum rubrum S1H Rru_A1684 Host factor Hfq (NCBI) no data 53 88
o Azospirillum brasilense Sp245 AZOBR_RS14465 RNA-binding protein Hfq no data 57 83
o Azospirillum sp. SherDot2 MPMX19_01116 RNA-binding protein Hfq no data 57 83
o Magnetospirillum magneticum AMB-1 AMB_RS11975 RNA-binding protein Hfq no data 52 91
  Dinoroseobacter shibae DFL-12 Dshi_1567 RNA chaperone Hfq (RefSeq) no data 56 83
  Sphingobium sp. HT1-2 GFF1145 RNA-binding protein Hfq / RNA-binding protein Hfq cofit 51 94
o Agrobacterium fabrum C58 Atu1450 putative RNA-binding protein Hfq no data 49 90
  Rhizobium sp. OAE497 ABIE40_RS09110 RNA chaperone Hfq no data 51 79
  Sinorhizobium meliloti 1021 SMc01048 RNA-binding protein Hfq no data 51 79
o Rhodopseudomonas palustris CGA009 TX73_013440 RNA chaperone Hfq no data 47 95
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0134 RNA chaperone Hfq no data 52 86
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0134 RNA chaperone Hfq no data 46 91
  Burkholderia phytofirmans PsJN BPHYT_RS08235 nucleoprotein, Hfg, host factor I insig. 49 83
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05122 host factor-I protein strong 49 83
  Paraburkholderia graminis OAS925 ABIE53_002427 host factor-I protein strong 49 83
  Paraburkholderia sabiae LMG 24235 QEN71_RS23015 RNA chaperone Hfq strong 48 85
  Sphingobium sp. HT1-2 GFF1145 RNA-binding protein Hfq / RNA-binding protein Hfq cofit 44 83
  Cupriavidus basilensis FW507-4G11 RR42_RS27945 RNA chaperone Hfq strong 57 64
  Marinobacter adhaerens HP15 HP15_2499 Hfq-like protein no data 70 47
  Cupriavidus basilensis FW507-4G11 RR42_RS23660 hypothetical protein insig. 39 70