Homologs of rimP from Erwinia tracheiphila SCR3

rimP: ribosome maturation factor RimP
SEED: FIG000325: clustered with transcription termination protein NusA
KEGG: ribosome maturation factor RimP

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Erwinia tracheiphila SCR3 LU632_RS21070 rimP ribosome maturation factor RimP no data 100 100
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_13925 rimP ribosome maturation factor RimP no data 99 100
o Erwinia amylovora T8 OLJFJH_07230 ribosome maturation factor RimP no data 92 100
o Escherichia coli BL21 ECD_03037 ribosome maturation factor for 30S subunits strong 91 100
o Escherichia fergusonii Becca EFB2_00653 Ribosome maturation factor RimP no data 91 100
  Escherichia coli Nissle 1917 ECOLIN_RS18205 ribosome maturation factor RimP no data 91 100
  Escherichia coli Nissle 1917 ECOLIN_RS18225 ribosome maturation factor RimP no data 91 100
  Escherichia coli Nissle 1917 ECOLIN_RS18245 ribosome maturation factor RimP no data 91 100
o Escherichia coli Nissle 1917 ECOLIN_RS18265 ribosome maturation factor RimP no data 91 100
o Escherichia coli BW25113 b3170 rimP conserved protein (RefSeq) no data 91 100
o Escherichia coli ECOR27 NOLOHH_09900 rimP ribosome maturation factor RimP no data 90 100
o Escherichia coli ECOR38 HEPCGN_16975 rimP ribosome maturation factor RimP no data 90 100
o Escherichia coli ECRC100 OKFHMN_18100 rimP ribosome maturation factor RimP no data 90 100
o Escherichia coli ECRC101 MCAODC_08620 rimP ribosome maturation factor RimP no data 90 100
o Escherichia coli ECRC102 NIAGMN_15860 rimP ribosome maturation factor RimP no data 90 100
o Escherichia coli ECRC62 BNILDI_01635 rimP ribosome maturation factor RimP no data 90 100
o Escherichia coli ECRC98 JDDGAC_21725 rimP ribosome maturation factor RimP no data 90 100
o Escherichia coli ECRC99 KEDOAH_10050 rimP ribosome maturation factor RimP no data 90 100
o Serratia liquefaciens MT49 IAI46_01925 ribosome maturation factor RimP no data 89 100
o Enterobacter asburiae PDN3 EX28DRAFT_3221 Uncharacterized protein conserved in bacteria no data 89 100
o Enterobacter sp. TBS_079 MPMX20_04075 Ribosome maturation factor RimP no data 89 100
o Dickeya dadantii 3937 DDA3937_RS03060 ribosome maturation factor RimP no data 90 100
o Dickeya dianthicola 67-19 HGI48_RS03230 ribosome maturation factor RimP no data 89 100
o Dickeya dianthicola ME23 DZA65_RS03225 ribosome maturation factor RimP no data 89 100
o Pantoea sp. MT58 IAI47_17035 ribosome maturation factor RimP sig. 89 100
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS09130 ribosome maturation factor RimP strong 89 100
o Klebsiella michiganensis M5al BWI76_RS25100 ribosome maturation factor no data 89 100
o Rahnella sp. WP5 EX31_RS08550 ribosome maturation factor RimP no data 89 100
o Pectobacterium carotovorum WPP14 HER17_RS18220 ribosome maturation factor RimP no data 85 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00530 Ribosome maturation factor RimP no data 90 93
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1496 FIG000325: clustered with transcription termination protein NusA no data 89 93
o Klebsiella pneumoniae MKP103 KDGMDA_05910 ribosome maturation factor RimP no data 89 93
o Vibrio cholerae E7946 ATCC 55056 CSW01_03380 ribosome maturation factor RimP no data 66 100
o Shewanella loihica PV-4 Shew_2829 hypothetical protein (RefSeq) no data 56 100
o Alteromonas macleodii MIT1002 MIT1002_01769 Ribosome maturation factor RimP no data 55 100
o Shewanella oneidensis MR-1 SO1202 conserved hypothetical protein (NCBI ptt file) no data 54 100
o Shewanella amazonensis SB2B Sama_0959 hypothetical protein (RefSeq) no data 54 100
o Shewanella sp. ANA-3 Shewana3_1028 hypothetical protein (RefSeq) no data 54 100
o Pseudomonas sp. SVBP6 COO64_RS15180 rimP ribosome maturation factor RimP no data 52 100
o Pseudomonas aeruginosa PA14 IKLFDK_29870 ribosome maturation factor RimP no data 49 100
o Pseudomonas stutzeri RCH2 Psest_0979 Uncharacterized protein conserved in bacteria no data 49 100
o Pseudomonas segetis P6 MPMX49_01199 Ribosome maturation factor RimP no data 51 99
o Kangiella aquimarina DSM 16071 B158DRAFT_0112 Uncharacterized protein conserved in bacteria strong 47 95
o Pseudomonas sp. S08-1 OH686_17135 Bacterial ribosome SSU maturation protein RimP no data 49 99
o Pseudomonas simiae WCS417 PS417_23980 ribosome maturation protein RimP no data 50 100
o Marinobacter adhaerens HP15 HP15_3069 protein belonging to uncharacterized protein family UPF0090 no data 48 100
o Pseudomonas fluorescens SBW25 PFLU_RS25820 ribosome maturation factor RimP no data 50 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS25820 ribosome maturation factor RimP no data 50 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04947 Ribosome maturation factor RimP no data 50 100
o Pseudomonas fluorescens FW300-N2E3 AO353_05570 ribosome maturation protein RimP no data 51 99
o Pseudomonas sp. DMC3 GFF4986 Ribosome maturation factor RimP no data 50 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_5090 FIG000325: clustered with transcription termination protein NusA no data 49 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1163 FIG000325: clustered with transcription termination protein NusA no data 50 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3355 FIG000325: clustered with transcription termination protein NusA no data 51 99
o Pseudomonas fluorescens FW300-N2C3 AO356_07420 ribosome maturation protein RimP no data 51 99
o Pseudomonas sp. RS175 PFR28_00088 Ribosome maturation factor RimP no data 51 99
o Pseudomonas putida KT2440 PP_4714 ribosome maturation factor no data 49 99
o Pseudomonas sp. BP01 JOY50_RS26825 rimP ribosome maturation factor RimP no data 47 100
o Pseudomonas syringae pv. syringae B728a Psyr_4182 Protein of unknown function DUF150 no data 49 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4182 Protein of unknown function DUF150 no data 49 99
o Lysobacter sp. OAE881 ABIE51_RS08385 ribosome maturation factor RimP no data 46 100
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2000.1 FIG000325: clustered with transcription termination protein NusA no data 44 96
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS06035 ribosome maturation factor RimP no data 43 99
o Rhodanobacter sp. FW510-T8 OKGIIK_05840 rimP ribosome maturation protein RimP insig. 42 97
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS09060 ribosome maturation factor RimP no data 41 97
o Acinetobacter baumannii LAC-4 RR41_RS17310 ribosome maturation factor RimP no data 44 98
o Azospirillum brasilense Sp245 AZOBR_RS01420 ribosome maturation factor RimP no data 39 94
o Acinetobacter radioresistens SK82 MPMX26_00252 Ribosome maturation factor RimP strong 44 98
o Rhodanobacter denitrificans MT42 LRK55_RS00830 ribosome maturation factor RimP no data 39 99
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS01055 ribosome maturation factor RimP no data 39 99
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS15670 ribosome maturation factor RimP no data 44 94
o Ralstonia solanacearum UW163 UW163_RS13130 ribosome maturation factor RimP no data 44 94
o Ralstonia solanacearum PSI07 RPSI07_RS17685 ribosome maturation factor RimP no data 44 94
o Burkholderia phytofirmans PsJN BPHYT_RS08060 ribosome maturation factor RimP strong 42 96
  Phaeobacter inhibens DSM 17395 PGA1_c34650 UPF0090 protein YhbC strong 40 92
o Ralstonia solanacearum GMI1000 RS_RS06450 ribosome maturation factor no data 44 94
o Azospirillum sp. SherDot2 MPMX19_02519 Ribosome maturation factor RimP no data 41 86
o Ralstonia sp. UNC404CL21Col ABZR87_RS11200 ribosome maturation factor RimP no data 44 94
o Paraburkholderia sabiae LMG 24235 QEN71_RS23110 ribosome maturation factor RimP sig. 42 95
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05102 ribosome maturation factor RimP sig. 41 95
o Magnetospirillum magneticum AMB-1 AMB_RS20595 ribosome maturation factor cofit 38 96
o Paraburkholderia graminis OAS925 ABIE53_001828 ribosome maturation factor RimP sig. 41 95
  Dinoroseobacter shibae DFL-12 Dshi_3560 protein of unknown function DUF150 (RefSeq) no data 39 86
o Dechlorosoma suillum PS Dsui_2724 hypothetical protein no data 41 95
o Desulfovibrio vulgaris Hildenborough JW710 DVU0511 conserved hypothetical protein (TIGR) insig. 34 96
  Rhodopseudomonas palustris CGA009 TX73_002280 ribosome maturation factor RimP sig. 38 91
  Bosea sp. OAE506 ABIE41_RS04540 ribosome maturation factor RimP no data 39 81
o Cupriavidus basilensis FW507-4G11 RR42_RS12855 ribosome maturation protein RimP no data 38 94
o Herbaspirillum seropedicae SmR1 HSERO_RS18005 ribosome maturation protein RimP no data 37 95
  Agrobacterium fabrum C58 Atu0090 hypothetical protein no data 36 80
  Rhodospirillum rubrum S1H Rru_A3778 Protein of unknown function DUF150 (NCBI) no data 36 76
  Rhizobium sp. OAE497 ABIE40_RS00320 ribosome maturation factor RimP no data 38 76
  Xanthobacter sp. DMC5 GFF2298 Ribosome maturation factor RimP no data 39 69
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2150 Uncharacterized protein conserved in bacteria no data 36 93
o Castellaniella sp019104865 MT123 ABCV34_RS02115 ribosome maturation factor RimP no data 35 87
o Caulobacter crescentus NA1000 CCNA_00044 ribosome maturation protein RimP strong 33 95
o Caulobacter crescentus NA1000 Δfur CCNA_00044 ribosome maturation protein RimP cofit 33 95
o Fusobacterium nucleatum SB010 HUW76_01020 ribosome maturation factor RimP strong 30 97
  Sphingobium sp. HT1-2 GFF2359 Bacterial ribosome SSU maturation protein RimP no data 41 79
  Sinorhizobium meliloti 1021 SMc02911 hypothetical protein no data 37 79