Homologs of HMPREF1078_RS17050 from Parabacteroides merdae CL09T00C40

ATP-dependent Clp endopeptidase proteolytic subunit ClpP
SEED: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)
KEGG: ATP-dependent Clp protease, protease subunit

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS17050 ATP-dependent Clp endopeptidase proteolytic subunit ClpP strong 100 100
o Bacteroides ovatus ATCC 8483 BACOVA_00335 endopeptidase Clp no data 79 100
o Bacteroides thetaiotaomicron VPI-5482 BT3842 ATP-dependent Clp protease proteolytic subunit 2 (NCBI ptt file) no data 79 100
o Bacteroides stercoris CC31F HMPREF1181_RS07450 ATP-dependent Clp endopeptidase proteolytic subunit ClpP strong 78 100
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS03085 ATP-dependent Clp endopeptidase proteolytic subunit ClpP cofit 78 100
o Phocaeicola dorei CL03T12C01 ABI39_RS02330 ATP-dependent Clp endopeptidase proteolytic subunit ClpP no data 78 100
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS06960 ATP-dependent Clp endopeptidase proteolytic subunit ClpP no data 68 99
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS04270 ATP-dependent Clp protease proteolytic subunit no data 69 99
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_01410 ATP-dependent Clp protease proteolytic subunit strong 64 99
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4634 Protease subunit of ATP-dependent Clp proteases no data 63 100
  Synechococcus elongatus PCC 7942 Synpcc7942_2525 clpPII ATP-dependent Clp protease proteolytic subunit ClpP strong 60 87
o Cupriavidus basilensis FW507-4G11 RR42_RS09020 Clp protease ClpP no data 59 85
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4042 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) strong 57 89
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS01350 ATP-dependent Clp protease proteolytic subunit no data 59 85
o Ralstonia solanacearum GMI1000 RS_RS08645 ATP-dependent Clp protease proteolytic subunit no data 59 85
o Ralstonia solanacearum PSI07 RPSI07_RS16125 ATP-dependent Clp protease proteolytic subunit insig. 59 85
o Ralstonia solanacearum UW163 UW163_RS14660 ATP-dependent Clp protease proteolytic subunit no data 59 85
o Paraburkholderia sabiae LMG 24235 QEN71_RS21985 ATP-dependent Clp endopeptidase proteolytic subunit ClpP no data 59 84
o Ralstonia sp. UNC404CL21Col ABZR87_RS12795 ATP-dependent Clp endopeptidase proteolytic subunit ClpP strong 57 85
o Burkholderia phytofirmans PsJN BPHYT_RS09450 ATP-dependent Clp protease proteolytic subunit 2 no data 58 84
o Acidovorax sp. GW101-3H11 Ac3H11_935 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) no data 57 85
o Enterobacter asburiae PDN3 EX28DRAFT_2534 ATP-dependent Clp endopeptidase, proteolytic subunit ClpP no data 57 86
o Dickeya dianthicola 67-19 HGI48_RS05685 ATP-dependent Clp endopeptidase proteolytic subunit ClpP no data 56 87
o Dickeya dianthicola ME23 DZA65_RS06010 ATP-dependent Clp endopeptidase proteolytic subunit ClpP no data 56 87
o Herbaspirillum seropedicae SmR1 HSERO_RS12915 Clp protease proteolytic subunit ClpP no data 56 92
o Dechlorosoma suillum PS Dsui_2196 ATP-dependent Clp protease, proteolytic subunit ClpP strong 58 84
o Dickeya dadantii 3937 DDA3937_RS05640 ATP-dependent Clp endopeptidase proteolytic subunit ClpP strong 55 87
o Variovorax sp. OAS795 ABID97_RS17600 ATP-dependent Clp endopeptidase proteolytic subunit ClpP strong 55 90
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00896 ATP-dependent Clp protease proteolytic subunit ClpP sig. 58 84
o Paraburkholderia graminis OAS925 ABIE53_002115 ATP-dependent Clp protease protease subunit strong 58 84
o Pseudomonas stutzeri RCH2 Psest_2287 ATP-dependent Clp protease, proteolytic subunit ClpP no data 55 87
o Enterobacter sp. TBS_079 MPMX20_01028 ATP-dependent Clp protease proteolytic subunit cofit 57 86
o Serratia liquefaciens MT49 IAI46_05010 ATP-dependent Clp endopeptidase proteolytic subunit ClpP cofit 56 86
  Synechococcus elongatus PCC 7942 Synpcc7942_1554 clpP1 ATP-dependent Clp protease proteolytic subunit no data 57 85
o Variovorax sp. SCN45 GFF489 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) strong 57 85
o Pectobacterium carotovorum WPP14 HER17_RS15850 ATP-dependent Clp endopeptidase proteolytic subunit ClpP no data 56 84
  Synechococcus elongatus PCC 7942 Synpcc7942_2537 clpPIII ATP-dependent Clp protease proteolytic subunit no data 64 78
o Klebsiella michiganensis M5al BWI76_RS06525 ATP-dependent Clp protease proteolytic subunit strong 56 86
o Escherichia coli BL21 ECD_00388 proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases strong 56 86
o Escherichia fergusonii Becca EFB2_03620 ATP-dependent Clp protease proteolytic subunit sig. 56 86
o Escherichia coli ECOR27 NOLOHH_01270 clpP ATP-dependent Clp endopeptidase proteolytic subunit ClpP no data 56 86
o Escherichia coli ECOR38 HEPCGN_06950 clpP ATP-dependent Clp endopeptidase proteolytic subunit ClpP strong 56 86
o Escherichia coli ECRC101 OKFHMN_08335 clpP ATP-dependent Clp endopeptidase proteolytic subunit ClpP no data 56 86
o Escherichia coli ECRC101 MCAODC_27560 clpP ATP-dependent Clp endopeptidase proteolytic subunit ClpP insig. 56 86
o Escherichia coli ECRC102 NIAGMN_06390 clpP ATP-dependent Clp endopeptidase proteolytic subunit ClpP insig. 56 86
o Escherichia coli ECRC62 BNILDI_22685 clpP ATP-dependent Clp endopeptidase proteolytic subunit ClpP strong 56 86
o Escherichia coli ECRC98 JDDGAC_11990 clpP ATP-dependent Clp endopeptidase proteolytic subunit ClpP no data 56 86
o Escherichia coli ECRC99 KEDOAH_19630 clpP ATP-dependent Clp endopeptidase proteolytic subunit ClpP no data 56 86
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03236 ATP-dependent Clp protease proteolytic subunit strong 56 86
o Escherichia coli Nissle 1917 ECOLIN_RS02625 ATP-dependent Clp endopeptidase proteolytic subunit ClpP cofit 56 86
o Escherichia coli BW25113 b0437 clpP ATP-dependent Clp protease proteolytic subunit (NCBI) strong 56 86
o Shewanella sp. ANA-3 Shewana3_2661 clpP ATP-dependent Clp protease proteolytic subunit (RefSeq) strong 56 87
o Castellaniella sp019104865 MT123 ABCV34_RS05135 ATP-dependent Clp endopeptidase proteolytic subunit ClpP no data 57 85
o Desulfovibrio vulgaris Hildenborough JW710 DVU1335 clpP ATP-dependent Clp protease, proteolytic subunit (TIGR) strong 58 84
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4353 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) strong 56 86
o Shewanella oneidensis MR-1 SO1794 clpP ATP-dependent Clp protease, proteolytic subunit (NCBI ptt file) strong 56 87
o Pantoea sp. MT58 IAI47_14655 ATP-dependent Clp endopeptidase proteolytic subunit ClpP no data 54 86
o Shewanella loihica PV-4 Shew_2508 clpP ATP-dependent Clp protease proteolytic subunit (RefSeq) insig. 55 91
o Erwinia tracheiphila SCR3 LU632_RS18345 clpP ATP-dependent Clp endopeptidase proteolytic subunit ClpP no data 55 84
o Lysobacter sp. OAE881 ABIE51_RS14155 ATP-dependent Clp endopeptidase proteolytic subunit ClpP strong 55 89
o Alteromonas macleodii MIT1002 MIT1002_02760 ATP-dependent Clp protease proteolytic subunit precursor strong 56 84
o Vibrio cholerae E7946 ATCC 55056 CSW01_09615 ATP-dependent Clp endopeptidase, proteolytic subunit ClpP no data 55 84
o Pseudomonas simiae WCS417 PS417_17235 Clp protease ClpP no data 56 84
o Rahnella sp. WP5 EX31_RS22245 ATP-dependent Clp endopeptidase proteolytic subunit ClpP strong 55 84
o Acinetobacter radioresistens SK82 MPMX26_00408 ATP-dependent Clp protease proteolytic subunit strong 54 89
o Rhodanobacter sp. FW510-T8 OKGIIK_08040 clpP ATP-dependent Clp endopeptidase proteolytic subunit ClpP no data 53 90
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS07330 ATP-dependent Clp endopeptidase proteolytic subunit ClpP no data 53 91
o Rhodanobacter denitrificans MT42 LRK55_RS16450 ATP-dependent Clp endopeptidase proteolytic subunit ClpP no data 54 90
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS16725 ATP-dependent Clp endopeptidase proteolytic subunit ClpP no data 54 90
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3945 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) no data 56 84
o Pseudomonas fluorescens SBW25 PFLU_RS19170 ATP-dependent Clp endopeptidase proteolytic subunit ClpP strong 56 84
o Pseudomonas fluorescens SBW25-INTG PFLU_RS19170 ATP-dependent Clp endopeptidase proteolytic subunit ClpP strong 56 84
o Marinobacter adhaerens HP15 HP15_2185 ATP-dependent Clp protease, proteolytic subunit ClpP no data 54 87
o Shewanella amazonensis SB2B Sama_1224 clpP ATP-dependent Clp protease proteolytic subunit (RefSeq) strong 54 91
o Kangiella aquimarina DSM 16071 B158DRAFT_1034 ATP-dependent Clp protease, proteolytic subunit ClpP strong 53 88
o Pseudomonas syringae pv. syringae B728a Psyr_1747 ATP-dependent Clp protease proteolytic subunit ClpP strong 54 86
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1747 ATP-dependent Clp protease proteolytic subunit ClpP sig. 54 86
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4048.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) no data 56 85
o Pseudomonas sp. RS175 PFR28_01228 ATP-dependent Clp protease proteolytic subunit no data 54 86
o Pseudomonas fluorescens FW300-N2C3 AO356_01750 ATP-dependent Clp protease proteolytic subunit strong 54 86
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2218 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) strong 54 86
o Pseudomonas putida KT2440 PP_2300 ATP-dependent Clp protease proteolytic subunit no data 56 84
o Pseudomonas fluorescens FW300-N2E3 AO353_20175 ATP-dependent Clp protease proteolytic subunit strong 54 86
o Pseudomonas fluorescens GW456-L13 PfGW456L13_2552 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) strong 56 83
o Desulfovibrio vulgaris Miyazaki F DvMF_0110 ATP-dependent Clp protease, proteolytic subunit ClpP (RefSeq) insig. 55 86
o Rhodospirillum rubrum S1H Rru_A1550 Endopeptidase Clp (NCBI) no data 52 89
  Paraburkholderia sabiae LMG 24235 QEN71_RS02860 ATP-dependent Clp endopeptidase proteolytic subunit ClpP insig. 53 84
o Magnetospirillum magneticum AMB-1 AMB_RS14045 ATP-dependent Clp endopeptidase, proteolytic subunit ClpP no data 51 91
  Burkholderia phytofirmans PsJN BPHYT_RS15840 Clp protease proteolytic subunit ClpP insig. 50 92
o Pseudomonas sp. S08-1 OH686_03645 ATP-dependent Clp endopeptidase, proteolytic subunit ClpP no data 52 91
  Paraburkholderia graminis OAS925 ABIE53_003339 ATP-dependent Clp protease protease subunit insig. 51 89
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04105 ATP-dependent Clp protease proteolytic subunit ClpP insig. 50 92
o Fusobacterium nucleatum SB010 HUW76_01055 ATP-dependent Clp endopeptidase proteolytic subunit ClpP no data 52 86
o Sinorhizobium meliloti 1021 SMc01903 ATP-dependent Clp protease proteolytic subunit no data 51 87
o Azospirillum sp. SherDot2 MPMX19_01548 ATP-dependent Clp protease proteolytic subunit no data 54 84
o Caulobacter crescentus NA1000 CCNA_02041 ATP-dependent endopeptidase clp, proteolytic subunit ClpP no data 51 86
o Caulobacter crescentus NA1000 Δfur CCNA_02041 ATP-dependent endopeptidase clp, proteolytic subunit ClpP no data 51 86
o Azospirillum brasilense Sp245 AZOBR_RS07135 ATP-dependent Clp protease proteolytic subunit no data 54 84
o Rhizobium sp. OAE497 ABIE40_RS07090 ATP-dependent Clp endopeptidase proteolytic subunit ClpP sig. 51 87
o Agrobacterium fabrum C58 Atu1258 ATP-dependent Clp protease, proteolytic subunit strong 51 87