Homologs of HGI48_RS03275 from Dickeya dianthicola 67-19

DEAD/DEAH family ATP-dependent RNA helicase
SEED: DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13)
KEGG: ATP-dependent RNA helicase DeaD

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Dickeya dianthicola 67-19 HGI48_RS03275 DEAD/DEAH family ATP-dependent RNA helicase insig. 100 100
o Dickeya dianthicola ME23 DZA65_RS03270 DEAD/DEAH family ATP-dependent RNA helicase no data 100 100
o Dickeya dadantii 3937 DDA3937_RS03100 DEAD/DEAH family ATP-dependent RNA helicase insig. 95 100
o Pectobacterium carotovorum WPP14 HER17_RS18175 DEAD/DEAH family ATP-dependent RNA helicase insig. 90 90
o Serratia liquefaciens MT49 IAI46_01970 DEAD/DEAH family ATP-dependent RNA helicase cofit 83 99
o Rahnella sp. WP5 EX31_RS08510 DEAD/DEAH family ATP-dependent RNA helicase insig. 82 100
o Klebsiella michiganensis M5al BWI76_RS25055 DEAD/DEAH family ATP-dependent RNA helicase no data 88 90
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1504 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) strong 84 99
o Enterobacter sp. TBS_079 MPMX20_04066 ATP-dependent RNA helicase DeaD insig. 84 97
o Escherichia coli BL21 ECD_03029 ATP-dependent RNA helicase sig. 88 90
o Escherichia fergusonii Becca EFB2_00661 ATP-dependent RNA helicase DeaD sig. 88 90
o Escherichia coli ECRC62 BNILDI_01580 deaD ATP-dependent RNA helicase DeaD sig. 88 90
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00538 ATP-dependent RNA helicase DeaD cofit 88 90
o Escherichia coli Nissle 1917 ECOLIN_RS18165 ATP-dependent RNA helicase DeaD cofit 88 90
o Escherichia coli BW25113 b3162 deaD inducible ATP-independent RNA helicase (VIMSS) strong 88 90
o Escherichia coli ECRC101 OKFHMN_18155 deaD ATP-dependent RNA helicase DeaD sig. 88 90
o Escherichia coli ECRC101 MCAODC_08675 deaD ATP-dependent RNA helicase DeaD sig. 88 90
o Escherichia coli ECRC102 NIAGMN_15915 deaD ATP-dependent RNA helicase DeaD insig. 88 90
o Escherichia coli ECRC98 JDDGAC_21780 deaD ATP-dependent RNA helicase DeaD no data 88 90
o Escherichia coli ECOR38 HEPCGN_17030 deaD ATP-dependent RNA helicase DeaD strong 88 90
o Escherichia coli ECRC99 KEDOAH_09995 deaD ATP-dependent RNA helicase DeaD no data 88 90
o Escherichia coli ECOR27 NOLOHH_09955 deaD ATP-dependent RNA helicase DeaD no data 88 90
o Enterobacter asburiae PDN3 EX28DRAFT_3211 Superfamily II DNA and RNA helicases no data 82 99
o Pantoea sp. MT58 IAI47_16990 DEAD/DEAH family ATP-dependent RNA helicase strong 84 92
o Erwinia tracheiphila SCR3 LU632_RS21030 DEAD/DEAH family ATP-dependent RNA helicase no data 85 90
o Dechlorosoma suillum PS Dsui_1351 DNA/RNA helicase, superfamily II strong 52 94
o Shewanella loihica PV-4 Shew_0531 DEAD/DEAH box helicase domain-containing protein (RefSeq) strong 52 94
o Shewanella amazonensis SB2B Sama_0512 ATP-dependent RNA helicase DeaD (RefSeq) strong 51 93
o Kangiella aquimarina DSM 16071 B158DRAFT_1850 ATP-dependent RNA helicase CsdA (EC 5.99.1.-) insig. 51 90
o Alteromonas macleodii MIT1002 MIT1002_00666 Cold-shock DEAD box protein A strong 50 96
o Shewanella oneidensis MR-1 SO4034 deaD ATP-dependent RNA helicase DeaD (NCBI ptt file) strong 52 90
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1841.1 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) insig. 49 94
o Shewanella sp. ANA-3 Shewana3_3595 DEAD/DEAH box helicase domain-containing protein (RefSeq) strong 51 94
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS08990 DEAD/DEAH box helicase strong 49 91
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02650 DEAD/DEAH box helicase insig. 50 88
o Rhodanobacter denitrificans MT42 LRK55_RS02405 DEAD/DEAH box helicase cofit 50 88
o Lysobacter sp. OAE881 ABIE51_RS12265 DEAD/DEAH box helicase insig. 47 90
o Rhodanobacter sp. FW510-T8 OKGIIK_09705 ATP-dependent RNA helicase cofit 49 88
o Pseudomonas sp. S08-1 OH686_22545 DEAD-box ATP-dependent RNA helicase DeaD ( CshA) cofit 47 89
o Mycobacterium tuberculosis H37Rv Rv1253 Probable cold-shock DeaD-box protein A homolog DeaD (ATP-dependent RNA helicase dead homolog) insig. 45 91
o Vibrio cholerae E7946 ATCC 55056 CSW01_18185 DEAD/DEAH box family ATP-dependent RNA helicase insig. 46 88
o Pseudomonas putida KT2440 PP_1868 ATP-dependent DEAD-box RNA helicase DeaD no data 48 89
o Pseudomonas stutzeri RCH2 Psest_1804 Superfamily II DNA and RNA helicases strong 47 88
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_265 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) no data 47 89
o Pseudomonas fluorescens FW300-N2C3 AO356_03110 RNA helicase no data 46 89
o Pseudomonas fluorescens FW300-N2E3 AO353_19130 RNA helicase no data 47 89
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2450 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) no data 46 89
o Pseudomonas simiae WCS417 PS417_08540 RNA helicase strong 46 89
o Pseudomonas fluorescens SBW25 PFLU_RS08490 DEAD/DEAH box helicase no data 46 89
o Pseudomonas fluorescens SBW25-INTG PFLU_RS08490 DEAD/DEAH box helicase strong 46 89
o Pseudomonas sp. RS175 PFR28_00980 ATP-dependent RNA helicase DeaD insig. 47 88
o Pseudomonas fluorescens GW456-L13 PfGW456L13_2247 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) no data 47 88
o Pseudomonas syringae pv. syringae B728a Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal no data 46 88
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal no data 46 88
  Marinobacter adhaerens HP15 HP15_588 DEAD/DEAH box helicase domain protein sig. 52 69
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3056 Superfamily II DNA and RNA helicases no data 40 89
o Desulfovibrio vulgaris Miyazaki F DvMF_2125 DEAD/DEAH box helicase domain protein (RefSeq) no data 42 86
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_05910 RNA helicase strong 39 86
o Desulfovibrio vulgaris Hildenborough JW710 DVU3310 deaD ATP-dependent RNA helicase, DEAD/DEAH family (TIGR) strong 41 86
o Methanococcus maripaludis JJ MMJJ_RS02855 DEAD/DEAH box helicase strong 39 87
o Methanococcus maripaludis S2 MMP_RS02420 DEAD/DEAH box helicase no data 39 87
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS11910 DEAD/DEAH box helicase strong 34 95
o Fusobacterium nucleatum SB010 HUW76_10100 DEAD/DEAH box helicase strong 38 87
o Bacteroides ovatus ATCC 8483 BACOVA_00904 DEAD/DEAH box helicase insig. 34 98
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS01495 DEAD/DEAH box helicase no data 36 89
o Phocaeicola dorei CL03T12C01 ABI39_RS04950 DEAD/DEAH box helicase strong 34 95
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS15600 ATP-dependent RNA helicase no data 43 63
o Bacteroides thetaiotaomicron VPI-5482 BT3303 ATP-dependent RNA helicase (NCBI ptt file) sig. 35 93
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS00535 DEAD/DEAH box helicase no data 45 59
o Bacteroides stercoris CC31F HMPREF1181_RS02175 DEAD/DEAH box helicase sig. 34 92
  Paraburkholderia sabiae LMG 24235 QEN71_RS06275 DEAD/DEAH box helicase insig. 45 58
  Burkholderia phytofirmans PsJN BPHYT_RS12280 RNA helicase insig. 45 58
  Paraburkholderia graminis OAS925 ABIE53_002535 superfamily II DNA/RNA helicase strong 45 58
  Azospirillum brasilense Sp245 AZOBR_RS22205 DNA helicase strong 43 60
  Phaeobacter inhibens DSM 17395 PGA1_c10590 putative ATP-dependent RNA helicase RhlE insig. 44 59
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00581 Superfamily II DNA and RNA helicase no data 45 58
  Rhizobium sp. OAE497 ABIE40_RS10055 DEAD/DEAH box helicase sig. 45 59
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS06015 DEAD/DEAH box helicase insig. 40 59
  Azospirillum sp. SherDot2 MPMX19_00976 ATP-dependent RNA helicase RhlE insig. 42 59
  Sinorhizobium meliloti 1021 SMc00522 ATP-dependent RNA helicase strong 44 59
  Dinoroseobacter shibae DFL-12 Dshi_1333 DEAD/DEAH box helicase domain protein (RefSeq) strong 44 59
  Herbaspirillum seropedicae SmR1 HSERO_RS17155 RNA helicase insig. 44 58
  Caulobacter crescentus NA1000 CCNA_00878 ATP-dependent RNA helicase cofit 43 58
  Caulobacter crescentus NA1000 Δfur CCNA_00878 ATP-dependent RNA helicase cofit 43 58
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS16115 DEAD/DEAH box helicase sig. 41 62
  Castellaniella sp019104865 MT123 ABCV34_RS13580 DEAD/DEAH box helicase insig. 44 59
  Lysobacter sp. OAE881 ABIE51_RS06650 DEAD/DEAH box helicase insig. 43 61
  Shewanella loihica PV-4 Shew_0604 DEAD/DEAH box helicase domain-containing protein (RefSeq) insig. 42 58
  Bacteroides stercoris CC31F HMPREF1181_RS03715 DEAD/DEAH box helicase insig. 42 57
  Paraburkholderia graminis OAS925 ABIE53_003462 ATP-dependent RNA helicase RhlE sig. 42 58
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04222 ATP-dependent RNA helicase RhlE sig. 42 58
  Burkholderia phytofirmans PsJN BPHYT_RS16445 RNA helicase strong 43 58
  Paraburkholderia sabiae LMG 24235 QEN71_RS02265 DEAD/DEAH box helicase strong 42 58
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS05195 ATP-dependent RNA helicase DbpA insig. 45 57
  Castellaniella sp019104865 MT123 ABCV34_RS12515 DEAD/DEAH box helicase cofit 44 58
  Rhodospirillum rubrum S1H Rru_A2718 DEAD/DEAH box helicase (NCBI) no data 44 58
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_06050 ATP-dependent RNA helicase insig. 43 57
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1574 Superfamily II DNA and RNA helicases strong 42 60
  Dechlorosoma suillum PS Dsui_3174 DNA/RNA helicase, superfamily II insig. 43 59
  Vibrio cholerae E7946 ATCC 55056 CSW01_18020 DEAD/DEAH box helicase cofit 43 59