| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3580 | | ATPases of the AAA+ class | insig. | 100 | 100 |
| o | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS03370 | | ATP-binding protein | insig. | 50 | 99 |
| o | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS07060 | | AAA family ATPase | insig. | 47 | 92 |
| o | Dickeya dianthicola ME23 | DZA65_RS10440 | | ATP-binding protein | insig. | 41 | 99 |
| o | Dinoroseobacter shibae DFL-12 | Dshi_2455 | | AAA ATPase central domain protein (RefSeq) | insig. | 42 | 81 |
| | Dinoroseobacter shibae DFL-12 | Dshi_2559 | | AAA ATPase central domain protein (RefSeq) | sig. | 38 | 75 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_00540 | | AAA family ATPase | insig. | 43 | 59 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS05830 | | ATP-binding protein | insig. | 42 | 59 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS06085 | | ATP-binding protein | insig. | 42 | 59 |
| | Pseudomonas sp. S08-1 | OH686_01155 | | ATPase, AAA family | insig. | 45 | 51 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS09615 | | ATP-binding protein | insig. | 39 | 60 |
| | Paraburkholderia graminis OAS925 | ABIE53_000512 | | SpoVK/Ycf46/Vps4 family AAA+-type ATPase | sig. | 32 | 51 |
| | Pseudomonas sp. DMC3 | GFF4126 | | ATP-dependent zinc metalloprotease FtsH | cofit | 31 | 55 |
| | Pseudomonas stutzeri RCH2 | Psest_0442 | | ATPases of the AAA+ class | strong | 30 | 55 |
| | Marinobacter adhaerens HP15 | HP15_1744 | | AAA ATPase central domain protein | insig. | 31 | 49 |
| | Pseudomonas segetis P6 | ACVTMO_RS00285 | | AAA family ATPase | no data | 32 | 49 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS13070 | | ATP-binding protein | insig. | 30 | 43 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS13070 | | ATP-binding protein | sig. | 30 | 43 |
| | Agrobacterium fabrum C58 | Atu6082 | | AAA-family ATPase | no data | 33 | 44 |
| | Shewanella loihica PV-4 | Shew_3822 | | ATPase central domain-containing protein (RefSeq) | strong | 31 | 41 |
| | Methanococcus maripaludis JJ | MMJJ_RS04505 | | CDC48 family AAA ATPase | strong | 29 | 52 |
| | Methanococcus maripaludis S2 | MMP_RS00985 | | CDC48 family AAA ATPase | strong | 29 | 56 |
| | Variovorax sp. SCN45 | GFF6421 | | ATPase, AAA family | cofit | 35 | 32 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4142 | | Cell division protein FtsH (EC 3.4.24.-) | no data | 33 | 39 |
| | Dechlorosoma suillum PS | Dsui_2646 | | AAA+ family ATPase | no data | 34 | 31 |
| | Variovorax sp. OAS795 | ABID97_RS03385 | | AAA family ATPase | sig. | 35 | 32 |
| | Bifidobacterium breve UCC2003 | BBR_RS17210 | | 26S protease regulatory subunit | insig. | 29 | 46 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS13915 | | ATPase | sig. | 36 | 31 |
| | Methanococcus maripaludis JJ | MMJJ_RS04505 | | CDC48 family AAA ATPase | strong | 37 | 31 |
| | Methanococcus maripaludis S2 | MMP_RS00985 | | CDC48 family AAA ATPase | strong | 37 | 31 |
| | Sphingobium sp. HT1-2 | GFF4390 | | AAA-family ATPase, Atu6082 type | no data | 33 | 32 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS02485 | | ATP-binding protein | insig. | 34 | 33 |
| | Ralstonia solanacearum UW163 | UW163_RS11240 | | ATP-binding protein | insig. | 34 | 33 |
| | Ralstonia solanacearum GMI1000 | RS_RS09860 | | ATP-binding protein | insig. | 35 | 33 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS17385 | | ATPase AAA | no data | 32 | 40 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS14395 | | ATP-binding protein | insig. | 29 | 45 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS14835 | | ATP-binding protein | insig. | 35 | 29 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF1960 | | Cell division protein FtsH (EC 3.4.24.-) | cofit | 34 | 31 |
| | Alteromonas macleodii MIT1002 | MIT1002_03220 | | ATP-dependent zinc metalloprotease FtsH | insig. | 29 | 38 |
| | Shewanella oneidensis MR-1 | SO3885 | | ATPase, AAA family (NCBI ptt file) | insig. | 36 | 28 |
| | Sphingobium sp. HT1-2 | GFF956 | | AAA family ATPase Cdc48 | insig. | 28 | 51 |
| | Methanococcus maripaludis JJ | MMJJ_RS05910 | | proteasome-activating nucleotidase | no data | 30 | 52 |
| | Methanococcus maripaludis S2 | MMP_RS08460 | | proteasome-activating nucleotidase | strong | 30 | 52 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_2176 | | AAA family ATPase, CDC48 subfamily | insig. | 28 | 51 |
| | Methanococcus maripaludis JJ | MMJJ_RS05340 | | AAA family ATPase | insig. | 31 | 48 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS19185 | | ATPase | no data | 27 | 39 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_2176 | | AAA family ATPase, CDC48 subfamily | insig. | 29 | 56 |
| | Sphingobium sp. HT1-2 | GFF956 | | AAA family ATPase Cdc48 | insig. | 30 | 43 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS60055 | | ATP-binding protein | no data | 37 | 31 |
| | Methanococcus maripaludis S2 | MMP_RS00150 | | AAA family ATPase | sig. | 31 | 48 |
| | Rhizobium sp. OAE497 | ABIE40_RS28070 | | AAA family ATPase | insig. | 33 | 38 |
| | Rhizobium sp. OAE497 | ABIE40_RS15580 | | ATP-dependent zinc metalloprotease FtsH | no data | 27 | 52 |
| | Pseudomonas sp. S08-1 | OH686_20210 | | Cell division-associated, ATP-dependent zinc metalloprotease FtsH | insig. | 29 | 52 |
| | Xanthobacter sp. DMC5 | GFF300 | | ATP-dependent zinc metalloprotease FtsH | insig. | 30 | 34 |
| | Paraburkholderia graminis OAS925 | ABIE53_000155 | | SpoVK/Ycf46/Vps4 family AAA+-type ATPase | no data | 27 | 44 |
| | Agrobacterium fabrum C58 | Atu3710 | | metalloprotease | no data | 26 | 52 |
| | Caulobacter crescentus NA1000 | CCNA_03334 | | cell division protein FtsH | no data | 26 | 54 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_03334 | | cell division protein FtsH | no data | 26 | 54 |
| | Rhodopseudomonas palustris CGA009 | TX73_021155 | | AAA family ATPase | insig. | 32 | 45 |
| | Dechlorosoma suillum PS | Dsui_1494 | | ATP-dependent metalloprotease FtsH | cofit | 29 | 56 |
| | Sinorhizobium meliloti 1021 | SMc04459 | | metalloprotease transmembrane protein | no data | 27 | 52 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS21005 | | peptidase M41 | no data | 31 | 45 |
| | Shewanella loihica PV-4 | Shew_3863 | | ATPase central domain-containing protein (RefSeq) | strong | 31 | 31 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS04115 | | ATP-dependent zinc metalloprotease FtsH3 | no data | 29 | 46 |
| | Rhodopseudomonas palustris CGA009 | TX73_005785 | | ATP-dependent zinc metalloprotease FtsH | no data | 27 | 52 |
| | Cellulophaga baltica 18 | M666_RS02015 | | AAA family ATPase | insig. | 31 | 45 |
| | Pseudomonas stutzeri RCH2 | Psest_0676 | | ATP-dependent metalloprotease FtsH | insig. | 27 | 55 |
| | Pseudomonas stutzeri RCH2 | Psest_3821 | | ATP-dependent Zn proteases | insig. | 27 | 53 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_1314 | ftsH | FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 | sig. | 27 | 56 |
| | Pectobacterium carotovorum WPP14 | HER17_RS18900 | | ATP-binding protein | no data | 33 | 39 |
| | Pseudomonas orientalis W4I3 | QF045_RS03885 | | ATP-binding protein | no data | 33 | 29 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS02165 | | ATP-dependent zinc metalloprotease FtsH | strong | 24 | 55 |
| | Ralstonia solanacearum GMI1000 | RS_RS07655 | | ATP-dependent zinc metalloprotease FtsH | no data | 24 | 55 |
| | Ralstonia solanacearum UW163 | UW163_RS15475 | | ATP-dependent zinc metalloprotease FtsH | no data | 24 | 55 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS15945 | | ATP-dependent zinc metalloprotease FtsH | no data | 25 | 53 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS15280 | | ATP-dependent zinc metalloprotease FtsH | strong | 24 | 55 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS14115 | | ATP-dependent zinc metalloprotease FtsH | strong | 24 | 55 |
| | Mycobacterium tuberculosis H37Rv | Rv3610c | | Membrane-bound protease FtsH (cell division protein) | strong | 31 | 42 |
| | Fusobacterium nucleatum SB010 | HUW76_10115 | | ATP-dependent zinc metalloprotease FtsH | strong | 27 | 44 |
| | Serratia liquefaciens MT49 | IAI46_01895 | | ATP-dependent zinc metalloprotease FtsH | no data | 27 | 52 |
| | Xanthobacter sp. DMC5 | GFF97 | | ATP-dependent zinc metalloprotease FtsH | no data | 27 | 52 |
| | Shewanella amazonensis SB2B | Sama_0954 | | vesicle-fusing ATPase (RefSeq) | no data | 27 | 50 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS16240 | | ATP-dependent zinc metalloprotease FtsH | no data | 28 | 52 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_0297 | ftsH | FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 | no data | 27 | 46 |
| | Mycobacterium tuberculosis H37Rv | Rv0435c | | Putative conserved ATPase | insig. | 29 | 43 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS09160 | | ATP-dependent zinc metalloprotease FtsH | no data | 26 | 52 |
| | Pantoea sp. MT58 | IAI47_17065 | | ATP-dependent zinc metalloprotease FtsH | no data | 26 | 52 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_442 | | Cell division protein FtsH (EC 3.4.24.-) | no data | 25 | 55 |
| | Escherichia coli BL21 | ECD_03043 | | protease, ATP-dependent zinc-metallo | no data | 28 | 42 |
| | Escherichia fergusonii Becca | EFB2_00645 | | ATP-dependent zinc metalloprotease FtsH | no data | 28 | 42 |
| | Escherichia coli ECOR27 | NOLOHH_09860 | ftsH | ATP-dependent zinc metalloprotease FtsH | no data | 28 | 42 |
| | Escherichia coli ECOR38 | HEPCGN_16935 | ftsH | ATP-dependent zinc metalloprotease FtsH | no data | 28 | 42 |
| | Escherichia coli ECRC100 | OKFHMN_18060 | ftsH | ATP-dependent zinc metalloprotease FtsH | no data | 28 | 42 |
| | Escherichia coli ECRC101 | MCAODC_08580 | ftsH | ATP-dependent zinc metalloprotease FtsH | no data | 28 | 42 |
| | Escherichia coli ECRC102 | NIAGMN_15820 | ftsH | ATP-dependent zinc metalloprotease FtsH | no data | 28 | 42 |
| | Escherichia coli ECRC62 | BNILDI_01675 | ftsH | ATP-dependent zinc metalloprotease FtsH | no data | 28 | 42 |
| | Escherichia coli ECRC98 | JDDGAC_21685 | ftsH | ATP-dependent zinc metalloprotease FtsH | no data | 28 | 42 |
| | Escherichia coli ECRC99 | KEDOAH_10090 | ftsH | ATP-dependent zinc metalloprotease FtsH | no data | 28 | 42 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_00522 | | ATP-dependent zinc metalloprotease FtsH | no data | 28 | 42 |
| | Escherichia coli BW25113 | b3178 | ftsH | protease, ATP-dependent zinc-metallo (NCBI) | no data | 28 | 42 |