Homologs of CSW01_01835 from Vibrio cholerae E7946 ATCC 55056

RNA-binding protein Hfq
SEED: RNA-binding protein Hfq
KEGG: host factor-I protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Vibrio cholerae E7946 ATCC 55056 CSW01_01835 RNA-binding protein Hfq no data 100 100
  Escherichia coli BL21 ECD_04039 global sRNA chaperone; HF-I, host factor for RNA phage Q beta replication strong 93 85
  Escherichia fergusonii Becca EFB2_04363 RNA-binding protein Hfq insig. 93 85
  Escherichia coli ECOR27 NOLOHH_04520 hfq RNA chaperone Hfq cofit 93 85
  Escherichia coli ECOR38 HEPCGN_10485 hfq RNA chaperone Hfq sig. 93 85
  Escherichia coli ECRC100 OKFHMN_12255 hfq RNA chaperone Hfq cofit 93 85
  Escherichia coli ECRC101 MCAODC_02770 hfq RNA chaperone Hfq sig. 93 85
  Escherichia coli ECRC102 NIAGMN_10105 hfq RNA chaperone Hfq strong 93 85
  Escherichia coli ECRC62 BNILDI_06970 hfq RNA chaperone Hfq strong 93 85
  Escherichia coli ECRC98 JDDGAC_15895 hfq RNA chaperone Hfq cofit 93 85
  Escherichia coli ECRC99 KEDOAH_15900 hfq RNA chaperone Hfq no data 93 85
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03870 RNA-binding protein Hfq sig. 93 85
  Escherichia coli Nissle 1917 ECOLIN_RS24230 RNA chaperone Hfq cofit 93 85
  Escherichia coli BW25113 b4172 hfq RNA-binding protein Hfq (NCBI) strong 93 85
  Enterobacter asburiae PDN3 EX28DRAFT_3369 RNA chaperone Hfq sig. 93 85
  Enterobacter sp. TBS_079 MPMX20_00453 RNA-binding protein Hfq strong 93 85
  Erwinia amylovora T8 OLJFJH_02500 RNA chaperone Hfq strong 93 85
  Klebsiella michiganensis M5al BWI76_RS02535 RNA-binding protein Hfq no data 93 85
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF825 RNA-binding protein Hfq sig. 93 85
  Pectobacterium carotovorum WPP14 HER17_RS02585 RNA chaperone Hfq strong 89 91
o Dickeya dianthicola 67-19 HGI48_RS18545 RNA chaperone Hfq strong 75 100
o Dickeya dianthicola ME23 DZA65_RS19680 RNA chaperone Hfq sig. 75 100
o Rahnella sp. WP5 EX31_RS08820 RNA chaperone Hfq strong 72 100
  Erwinia tracheiphila SCR3 LU632_RS02055 hfq RNA chaperone Hfq no data 93 85
  Serratia liquefaciens MT49 IAI46_01625 RNA chaperone Hfq strong 96 83
  Dickeya dadantii 3937 DDA3937_RS18610 RNA chaperone Hfq strong 89 91
  Pantoea sp. MT58 IAI47_02590 RNA chaperone Hfq strong 96 82
o Shewanella loihica PV-4 Shew_0566 RNA chaperone Hfq (RefSeq) insig. 89 83
o Pseudomonas aeruginosa PA14 IKLFDK_28820 RNA chaperone Hfq no data 84 89
o Shewanella amazonensis SB2B Sama_3025 host factor-I protein (RefSeq) no data 87 84
  Shewanella sp. ANA-3 Shewana3_0597 RNA-binding protein Hfq (RefSeq) no data 96 77
  Shewanella oneidensis MR-1 SO0603 hfq host factor-I protein (NCBI ptt file) strong 96 77
o Alteromonas macleodii MIT1002 MIT1002_03788 Host factor-I protein strong 88 85
  Kangiella aquimarina DSM 16071 B158DRAFT_1952 RNA chaperone Hfq strong 86 84
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3120.1 RNA-binding protein Hfq insig. 90 78
  Pseudomonas sp. S08-1 OH686_09470 RNA chaperone Hfq strong 88 78
  Pseudomonas stutzeri RCH2 Psest_0683 RNA chaperone Hfq no data 88 78
o Lysobacter sp. OAE881 ABIE51_RS06540 RNA chaperone Hfq strong 88 78
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS08365 RNA chaperone Hfq no data 74 93
  Pseudomonas putida KT2440 PP_4894 RNA-binding protein Hfq no data 85 78
  Pseudomonas sp. BP01 JOY50_RS17230 hfq RNA chaperone Hfq insig. 85 78
o Acidovorax sp. GW101-3H11 Ac3H11_1799 RNA-binding protein Hfq no data 75 89
  Dechlorosoma suillum PS Dsui_3137 RNA chaperone Hfq no data 88 77
o Castellaniella sp019104865 MT123 ABCV34_RS02650 RNA chaperone Hfq no data 81 83
  Rhodanobacter sp. FW510-T8 OKGIIK_06630 hfq RNA chaperone Hfq insig. 84 78
  Paraburkholderia sabiae LMG 24235 QEN71_RS06000 RNA chaperone Hfq no data 84 79
  Burkholderia phytofirmans PsJN BPHYT_RS12555 RNA-binding protein Hfq no data 84 79
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00521 RNA-binding protein Hfq no data 84 79
  Paraburkholderia graminis OAS925 ABIE53_002737 host factor-I protein no data 84 79
  Acinetobacter radioresistens SK82 MPMX26_01209 RNA-binding protein Hfq cofit 86 76
  Rhodanobacter denitrificans MT42 LRK55_RS00400 RNA chaperone Hfq cofit 84 78
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00630 RNA chaperone Hfq sig. 84 78
o Methylophilus sp. DMC18 GFF1221 RNA-binding protein Hfq no data 82 83
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS09525 RNA chaperone Hfq no data 84 78
o Ralstonia sp. UNC404CL21Col ABZR87_RS10940 RNA chaperone Hfq no data 78 85
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4858 RNA-binding protein Hfq no data 77 87
  Pseudomonas fluorescens GW456-L13 PfGW456L13_154 RNA-binding protein Hfq no data 82 78
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1412 RNA-binding protein Hfq no data 82 78
  Pseudomonas sp. DMC3 GFF3220 RNA-binding protein Hfq no data 82 78
  Pseudomonas sp. RS175 PFR28_05121 RNA-binding protein Hfq no data 82 78
  Pseudomonas sp. SVBP6 COO64_RS17900 hfq RNA chaperone Hfq no data 82 78
  Pseudomonas syringae pv. syringae B728a Psyr_0572 RNA-binding protein Hfq no data 82 78
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0572 RNA-binding protein Hfq no data 82 78
  Pseudomonas fluorescens FW300-N2E3 AO353_13145 RNA-binding protein no data 82 78
  Pseudomonas fluorescens FW300-N2C3 AO356_08655 RNA-binding protein no data 82 78
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3614 RNA-binding protein Hfq no data 82 78
o Pseudomonas fluorescens SBW25 PFLU_RS02570 RNA chaperone Hfq no data 82 78
o Pseudomonas fluorescens SBW25-INTG PFLU_RS02570 RNA chaperone Hfq no data 82 78
o Pseudomonas simiae WCS417 PS417_02490 RNA-binding protein Hfq no data 82 78
  Cupriavidus basilensis FW507-4G11 RR42_RS13115 RNA chaperone Hfq no data 84 77
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15300 RNA-binding protein Hfq no data 84 77
  Ralstonia solanacearum GMI1000 RS_RS06110 RNA-binding protein Hfq no data 84 77
  Ralstonia solanacearum PSI07 RPSI07_RS18075 RNA-binding protein Hfq no data 84 77
  Ralstonia solanacearum UW163 UW163_RS12765 RNA-binding protein Hfq no data 84 77
  Herbaspirillum seropedicae SmR1 HSERO_RS14775 RNA-binding protein Hfq no data 82 77
o Variovorax sp. OAS795 ABID97_RS14250 RNA chaperone Hfq no data 76 83
o Variovorax sp. SCN45 GFF1000 RNA-binding protein Hfq no data 76 83
o Phaeobacter inhibens DSM 17395 PGA1_c14850 protein hfq (RNA chaperone hfq) no data 54 80
  Dinoroseobacter shibae DFL-12 Dshi_1567 RNA chaperone Hfq (RefSeq) no data 54 80
o Caulobacter crescentus NA1000 CCNA_01819 RNA-binding protein, Hfq family no data 50 89
o Caulobacter crescentus NA1000 Δfur CCNA_01819 RNA-binding protein, Hfq family no data 50 89
  Bosea sp. OAE506 ABIE41_RS16770 RNA chaperone Hfq no data 54 76
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04830 RNA chaperone Hfq no data 51 83
o Rhizobium sp. OAE497 ABIE40_RS09110 RNA chaperone Hfq no data 45 87
o Sinorhizobium meliloti 1021 SMc01048 RNA-binding protein Hfq no data 45 87
  Azospirillum sp. SherDot2 MPMX19_01116 RNA-binding protein Hfq no data 55 76
  Azospirillum brasilense Sp245 AZOBR_RS14465 RNA-binding protein Hfq no data 55 76
  Magnetospirillum magneticum AMB-1 AMB_RS11975 RNA-binding protein Hfq no data 54 77
  Xanthobacter sp. DMC5 GFF841 RNA-binding protein Hfq insig. 52 76
o Agrobacterium fabrum C58 Atu1450 putative RNA-binding protein Hfq no data 44 87
o Rhodopseudomonas palustris CGA009 TX73_013440 RNA chaperone Hfq no data 50 86
  Rhodospirillum rubrum S1H Rru_A1684 Host factor Hfq (NCBI) no data 55 76
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0134 RNA chaperone Hfq no data 52 76
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0134 RNA chaperone Hfq no data 49 78
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05122 host factor-I protein strong 55 71
  Paraburkholderia graminis OAS925 ABIE53_002427 host factor-I protein strong 55 71
  Burkholderia phytofirmans PsJN BPHYT_RS08235 nucleoprotein, Hfg, host factor I insig. 55 71
  Paraburkholderia sabiae LMG 24235 QEN71_RS23015 RNA chaperone Hfq strong 57 63
  Cupriavidus basilensis FW507-4G11 RR42_RS27945 RNA chaperone Hfq strong 47 79
  Marinobacter adhaerens HP15 HP15_2499 Hfq-like protein no data 88 30