Homologs of CA264_18070 from Pontibacter actiniarum KMM 6156, DSM 19842

RNA polymerase sigma-54 factor
SEED: RNA polymerase sigma-54 factor RpoN
KEGG: RNA polymerase sigma-54 factor

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_18070 RNA polymerase sigma-54 factor no data 100 100
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0071 RNA polymerase sigma-54 factor no data 67 100
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11005 RNA polymerase sigma-54 factor no data 57 100
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS14570 RNA polymerase factor sigma-54 no data 56 100
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS05920 RNA polymerase factor sigma-54 cofit 55 97
o Bacteroides stercoris CC31F HMPREF1181_RS00925 RNA polymerase factor sigma-54 no data 50 97
o Bacteroides ovatus ATCC 8483 BACOVA_01616 RNA polymerase sigma-54 factor no data 51 97
o Phocaeicola dorei CL03T12C01 ABI39_RS04230 RNA polymerase factor sigma-54 strong 50 97
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS12505 RNA polymerase factor sigma-54 strong 50 97
o Bacteroides thetaiotaomicron VPI-5482 BT2521 RNA polymerase sigma-54 (NCBI ptt file) no data 50 97
o Pseudomonas sp. S08-1 OH686_08540 RNA polymerase sigma-54 factor no data 34 97
o Pseudomonas fluorescens GW456-L13 PfGW456L13_5014 RNA polymerase sigma-54 factor RpoN no data 34 97
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1080 RNA polymerase sigma-54 factor RpoN no data 34 97
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3267 RNA polymerase sigma-54 factor RpoN no data 34 97
o Pseudomonas fluorescens FW300-N2C3 AO356_07035 RNA polymerase sigma-54 factor no data 35 97
o Pseudomonas sp. RS175 PFR28_00173 RNA polymerase sigma-54 factor no data 34 97
o Pseudomonas putida KT2440 PP_0952 RNA polymerase sigma-54 factor no data 35 97
o Pseudomonas syringae pv. syringae B728a Psyr_4147 RNA polymerase, sigma 54 subunit, RpoN/SigL no data 34 97
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4147 RNA polymerase, sigma 54 subunit, RpoN/SigL no data 34 97
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1662.1 RNA polymerase sigma-54 factor RpoN strong 36 97
o Pectobacterium carotovorum WPP14 HER17_RS20060 RNA polymerase factor sigma-54 strong 36 100
o Dickeya dianthicola 67-19 HGI48_RS01445 RNA polymerase factor sigma-54 cofit 36 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2946 RNA polymerase sigma-54 factor RpoN strong 36 100
o Pseudomonas fluorescens FW300-N2E3 AO353_05180 RNA polymerase sigma-54 factor no data 34 97
o Rahnella sp. WP5 EX31_RS12400 RNA polymerase factor sigma-54 strong 36 100
o Dickeya dianthicola ME23 DZA65_RS01510 RNA polymerase factor sigma-54 strong 36 100
o Pseudomonas fluorescens SBW25 PFLU_RS04400 RNA polymerase factor sigma-54 no data 34 97
o Pseudomonas fluorescens SBW25-INTG PFLU_RS04400 RNA polymerase factor sigma-54 no data 34 97
o Pseudomonas simiae WCS417 PS417_04345 RNA polymerase factor sigma-54 no data 33 97
o Escherichia coli BL21 ECD_03067 RNA polymerase, sigma 54 (sigma N) factor strong 36 100
o Escherichia fergusonii Becca EFB2_00621 RNA polymerase sigma-54 factor no data 36 100
o Escherichia coli ECOR38 HEPCGN_16815 rpoN RNA polymerase factor sigma-54 no data 36 100
o Escherichia coli ECRC101 OKFHMN_17940 rpoN RNA polymerase factor sigma-54 no data 36 100
o Escherichia coli ECRC101 MCAODC_08460 rpoN RNA polymerase factor sigma-54 no data 36 100
o Escherichia coli ECRC102 NIAGMN_15700 rpoN RNA polymerase factor sigma-54 no data 36 100
o Escherichia coli ECRC62 BNILDI_01795 rpoN RNA polymerase factor sigma-54 no data 36 100
o Escherichia coli ECRC98 JDDGAC_21565 rpoN RNA polymerase factor sigma-54 no data 36 100
o Escherichia coli ECRC99 KEDOAH_10210 rpoN RNA polymerase factor sigma-54 no data 36 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00498 RNA polymerase sigma-54 factor no data 36 100
o Escherichia coli Nissle 1917 ECOLIN_RS18425 RNA polymerase factor sigma-54 no data 36 100
o Escherichia coli BW25113 b3202 rpoN DNA-directed RNA polymerase subunit N (NCBI) no data 36 100
o Escherichia coli ECOR27 NOLOHH_09740 rpoN RNA polymerase factor sigma-54 no data 36 100
o Dickeya dadantii 3937 DDA3937_RS01530 RNA polymerase factor sigma-54 strong 36 100
o Marinobacter adhaerens HP15 HP15_2442 RNA polymerase, sigma 54 subunit, RpoN strong 34 98
o Pantoea sp. MT58 IAI47_17185 RNA polymerase factor sigma-54 strong 36 100
o Cupriavidus basilensis FW507-4G11 RR42_RS02085 RNA polymerase subunit sigma-54 strong 35 99
o Pseudomonas stutzeri RCH2 Psest_3313 RNA polymerase sigma-54 factor no data 34 97
o Desulfovibrio vulgaris Miyazaki F DvMF_0427 RNA polymerase, sigma 54 subunit, RpoN (RefSeq) no data 36 99
o Klebsiella michiganensis M5al BWI76_RS25265 RNA polymerase factor sigma-54 no data 35 100
o Alteromonas macleodii MIT1002 MIT1002_00827 RNA polymerase sigma-54 factor 2 cofit 35 97
o Desulfovibrio vulgaris Hildenborough JW710 DVU1628 rpoN RNA polymerase sigma-54 factor (TIGR) no data 35 99
o Serratia liquefaciens MT49 IAI46_22470 RNA polymerase factor sigma-54 no data 36 100
o Enterobacter asburiae PDN3 EX28DRAFT_3256 RNA polymerase, sigma 54 subunit, RpoN/SigL no data 35 100
o Erwinia tracheiphila SCR3 LU632_RS21280 rpoN RNA polymerase factor sigma-54 no data 35 100
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS11170 RNA polymerase sigma-54 factor sig. 33 100
o Ralstonia solanacearum UW163 UW163_RS02410 RNA polymerase sigma-54 factor insig. 33 100
o Ralstonia solanacearum GMI1000 RS_RS02020 RNA polymerase sigma-54 factor insig. 33 100
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS23300 RNA polymerase sigma-54 factor insig. 35 99
  Ralstonia solanacearum UW163 UW163_RS16550 RNA polymerase sigma-54 factor insig. 35 99
o Ralstonia solanacearum PSI07 RPSI07_RS22130 RNA polymerase factor sigma-54 cofit 33 100
o Ralstonia sp. UNC404CL21Col ABZR87_RS23535 RNA polymerase factor sigma-54 strong 33 99
  Ralstonia sp. UNC404CL21Col ABZR87_RS07060 RNA polymerase factor sigma-54 strong 33 100
o Enterobacter sp. TBS_079 MPMX20_04108 RNA polymerase sigma-54 factor no data 35 100
  Ralstonia solanacearum PSI07 RPSI07_RS07850 RNA polymerase factor sigma-54 insig. 34 99
  Ralstonia solanacearum GMI1000 RS_RS25120 RNA polymerase sigma-54 factor insig. 34 99
o Paraburkholderia graminis OAS925 ABIE53_000718 RNA polymerase sigma-54 factor strong 33 99
o Dechlorosoma suillum PS Dsui_0704 RNA polymerase sigma-54 factor strong 33 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_12815 RNA polymerase sigma-54 factor sig. 34 97
o Lysobacter sp. OAE881 ABIE51_RS15955 RNA polymerase factor sigma-54 strong 33 97
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01927 RNA polymerase, sigma 54 subunit, RpoN/SigL strong 33 99
o Burkholderia phytofirmans PsJN BPHYT_RS02905 RNA polymerase subunit sigma-54 strong 33 99
o Acidovorax sp. GW101-3H11 Ac3H11_727 RNA polymerase sigma-54 factor RpoN strong 33 99
o Paraburkholderia sabiae LMG 24235 QEN71_RS01755 RNA polymerase factor sigma-54 strong 33 99
  Paraburkholderia sabiae LMG 24235 QEN71_RS10760 RNA polymerase factor sigma-54 insig. 31 99
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3068 RNA polymerase sigma-54 factor RpoN strong 32 100
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02908 RNA polymerase, sigma 54 subunit, RpoN/SigL sig. 32 100
  Burkholderia phytofirmans PsJN BPHYT_RS27005 RNA polymerase sigma54 factor insig. 32 100
o Shewanella amazonensis SB2B Sama_3088 RNA polymerase factor sigma-54 (RefSeq) strong 39 70
o Castellaniella sp019104865 MT123 ABCV34_RS12430 RNA polymerase factor sigma-54 strong 33 97
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS19815 RNA polymerase factor sigma-54 strong 33 97
  Paraburkholderia graminis OAS925 ABIE53_005882 RNA polymerase sigma-54 factor strong 32 100
o Variovorax sp. OAS795 ABID97_RS04780 RNA polymerase factor sigma-54 no data 32 100
o Shewanella oneidensis MR-1 SO3961 rpoN RNA polymerase sigma-54 factor (NCBI ptt file) strong 37 70
o Shewanella loihica PV-4 Shew_3311 RNA polymerase factor sigma-54 (RefSeq) strong 38 65
o Shewanella sp. ANA-3 Shewana3_0672 RNA polymerase factor sigma-54 (RefSeq) strong 37 70
o Rhodanobacter denitrificans MT42 LRK55_RS12575 RNA polymerase factor sigma-54 cofit 34 97
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS12875 RNA polymerase factor sigma-54 strong 34 97
o Bosea sp. OAE506 ABIE41_RS00125 RNA polymerase factor sigma-54 insig. 32 100
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3646 RNA polymerase sigma-54 factor RpoN insig. 30 100
o Variovorax sp. SCN45 GFF6290 RNA polymerase sigma-54 factor RpoN strong 32 100
o Kangiella aquimarina DSM 16071 B158DRAFT_2080 RNA polymerase, sigma 54 subunit, RpoN/SigL insig. 33 99
  Variovorax sp. OAS795 ABID97_RS11945 RNA polymerase factor sigma-54 insig. 30 99
o Rhodanobacter sp. FW510-T8 OKGIIK_02265 RNA polymerase factor sigma-54 insig. 34 79
o Herbaspirillum seropedicae SmR1 HSERO_RS19855 RNA polymerase subunit sigma-54 no data 31 100
o Caulobacter crescentus NA1000 CCNA_03713 RNA polymerase sigma-54 factor rpoN strong 32 100
o Caulobacter crescentus NA1000 Δfur CCNA_03713 RNA polymerase sigma-54 factor rpoN cofit 32 100
o Azospirillum brasilense Sp245 AZOBR_RS18870 RNA polymerase sigma54 factor strong 32 99
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2543 RNA polymerase, sigma 54 subunit, RpoN/SigL strong 33 98
  Rhodopseudomonas palustris CGA009 TX73_000260 RNA polymerase factor sigma-54 strong 36 81
o Rhodospirillum rubrum S1H Rru_A0010 Sigma-54 (RpoN) (NCBI) sig. 33 99