Homologs of ycbY from Escherichia coli BW25113

ycbY: predicted methyltransferase (NCBI)
SEED: 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-)
KEGG: ribosomal RNA large subunit methyltransferase L

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02718 Ribosomal RNA large subunit methyltransferase K/L insig. 100 100
  Escherichia coli BW25113 b0948 ycbY predicted methyltransferase (NCBI) strong 100 100
o Escherichia coli BL21 ECD_00952 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent insig. 100 100
o Escherichia coli ECOR38 HEPCGN_23240 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL cofit 100 100
o Escherichia coli ECRC100 OKFHMN_05280 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 100 100
o Escherichia coli ECRC101 MCAODC_24670 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL cofit 100 100
o Escherichia coli ECRC102 NIAGMN_03000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 100 100
o Escherichia coli ECRC99 KEDOAH_22455 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL no data 100 100
o Escherichia coli ECOR27 NOLOHH_21835 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 100 100
o Escherichia coli ECRC62 BNILDI_20000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL cofit 100 100
o Escherichia coli ECRC98 JDDGAC_08890 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL cofit 100 100
o Escherichia fergusonii Becca EFB2_03123 Ribosomal RNA large subunit methyltransferase K/L insig. 99 100
o Escherichia coli Nissle 1917 ECOLIN_RS04980 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 99 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3239 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) insig. 92 100
o Enterobacter sp. TBS_079 MPMX20_01599 Ribosomal RNA large subunit methyltransferase K/L insig. 88 100
o Klebsiella michiganensis M5al BWI76_RS09925 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase insig. 89 100
o Enterobacter asburiae PDN3 EX28DRAFT_1995 Predicted N6-adenine-specific DNA methylase insig. 87 100
o Erwinia amylovora T8 OLJFJH_15975 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 78 100
o Pectobacterium carotovorum WPP14 HER17_RS11990 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL cofit 76 100
o Serratia liquefaciens MT49 IAI46_08820 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 77 100
o Pantoea sp. MT58 IAI47_12690 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 75 100
o Erwinia tracheiphila SCR3 LU632_RS09965 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 77 100
o Rahnella sp. WP5 EX31_RS18080 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 75 100
o Dickeya dadantii 3937 DDA3937_RS12840 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 75 100
o Dickeya dianthicola 67-19 HGI48_RS12910 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 75 100
o Dickeya dianthicola ME23 DZA65_RS13375 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 75 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_07480 ribosomal RNA large subunit methyltransferase K/L insig. 57 100
o Shewanella amazonensis SB2B Sama_1600 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) strong 53 100
o Shewanella oneidensis MR-1 SO1851 conserved hypothetical protein (NCBI ptt file) strong 50 100
o Shewanella sp. ANA-3 Shewana3_1601 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) strong 50 100
o Shewanella loihica PV-4 Shew_1812 23S rRNA m(2)G2445 methyltransferase (RefSeq) sig. 49 100
o Alteromonas macleodii MIT1002 MIT1002_02036 Ribosomal RNA large subunit methyltransferase K/L cofit 46 100
o Pseudomonas aeruginosa PA14 IKLFDK_15510 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 47 99
o Pseudomonas stutzeri RCH2 Psest_1949 Predicted N6-adenine-specific DNA methylase insig. 48 100
o Pseudomonas sp. BP01 JOY50_RS22095 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 47 99
o Pseudomonas putida KT2440 PP_2096 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase sig. 47 99
o Pseudomonas sp. S08-1 OH686_03110 23S rRNA (guanine(2445)-N(2))-methyltransferase / 23S rRNA (guanine(2069)-N(7))-methyltransferase insig. 47 99
o Pseudomonas sp. SVBP6 COO64_RS05295 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 45 99
o Pseudomonas syringae pv. syringae B728a Psyr_2108 23S rRNA m(2)G-2445 methyltransferase insig. 45 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2108 23S rRNA m(2)G-2445 methyltransferase insig. 45 99
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS14000 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 45 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS21235 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 44 100
o Pseudomonas simiae WCS417 PS417_20930 50S rRNA methyltransferase strong 44 99
o Pseudomonas fluorescens SBW25 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL cofit 44 99
o Pseudomonas fluorescens SBW25-INTG PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 44 99
o Rhodanobacter denitrificans MT42 LRK55_RS14315 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL cofit 45 100
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS14600 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 45 100
o Pseudomonas sp. DMC3 GFF5254 Ribosomal RNA large subunit methyltransferase K/L cofit 44 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4094 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) sig. 44 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3844 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) insig. 44 100
o Rhodanobacter sp. FW510-T8 OKGIIK_03440 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 45 99
o Pseudomonas fluorescens FW300-N2E3 AO353_00775 50S rRNA methyltransferase insig. 44 100
o Pseudomonas sp. RS175 PFR28_01055 Ribosomal RNA large subunit methyltransferase K/L insig. 44 100
o Pseudomonas fluorescens FW300-N2C3 AO356_02605 50S rRNA methyltransferase insig. 43 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2346 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) insig. 43 100
o Marinobacter adhaerens HP15 HP15_1379 RNA methylase insig. 44 98
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3335.1 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) insig. 45 99
o Kangiella aquimarina DSM 16071 B158DRAFT_2229 23S rRNA m(2)G-2445 methyltransferase (EC 2.1.1.52) insig. 42 99
o Acinetobacter radioresistens SK82 MPMX26_01097 Ribosomal RNA large subunit methyltransferase K/L cofit 42 100
o Lysobacter sp. OAE881 ABIE51_RS14475 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 41 99
  Synechocystis sp000284455 PCC 6803 SGL_RS13955 RNA methyltransferase insig. 36 53
  Synechococcus elongatus PCC 7942 Synpcc7942_1263 N6-adenine-specific DNA methylase-like sig. 38 54
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_07835 RNA methyltransferase sig. 37 53
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS06795 THUMP domain-containing protein strong 33 60
  Bacteroides ovatus ATCC 8483 BACOVA_01351 THUMP domain protein strong 34 54
  Bacteroides stercoris CC31F HMPREF1181_RS01570 RNA methyltransferase strong 32 60
  Methylophilus sp. DMC18 GFF622 Ribosomal RNA large subunit methyltransferase L insig. 34 53
  Dechlorosoma suillum PS Dsui_0606 putative N6-adenine-specific DNA methylase insig. 35 53
  Castellaniella sp019104865 MT123 ABCV34_RS00835 THUMP domain-containing protein insig. 36 54
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10985 RNA methyltransferase strong 33 54
  Phocaeicola dorei CL03T12C01 ABI39_RS06065 RNA methyltransferase insig. 32 54
  Bacteroides thetaiotaomicron VPI-5482 BT3255 putative N6-adenine-specific DNA methylase (NCBI ptt file) strong 34 54
  Cellulophaga baltica 18 M666_RS10235 THUMP domain-containing protein insig. 33 55
  Fusobacterium nucleatum SB010 HUW76_03020 class I SAM-dependent RNA methyltransferase cofit 33 53
  Herbaspirillum seropedicae SmR1 HSERO_RS02950 DNA methyltransferase sig. 32 53
  Paraburkholderia sabiae LMG 24235 QEN71_RS26700 class I SAM-dependent RNA methyltransferase strong 32 51
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS21855 RNA methyltransferase sig. 36 46
  Paraburkholderia graminis OAS925 ABIE53_000817 putative N6-adenine-specific DNA methylase insig. 33 53
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04658 putative N6-adenine-specific DNA methylase insig. 32 53
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3069 Methyltransferase (EC 2.1.1.-) insig. 36 45
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS01945 class I SAM-dependent RNA methyltransferase insig. 32 53
  Burkholderia phytofirmans PsJN BPHYT_RS03395 DNA methyltransferase insig. 32 49
  Variovorax sp. SCN45 GFF6282 23S rRNA (guanine(2445)-N(2))-methyltransferase (EC 2.1.1.173) insig. 32 53
  Acidovorax sp. GW101-3H11 Ac3H11_730 Methyltransferase (EC 2.1.1.-) sig. 30 56
  Cupriavidus basilensis FW507-4G11 RR42_RS17515 DNA methyltransferase insig. 32 53
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3616 Predicted N6-adenine-specific DNA methylase insig. 34 46
  Variovorax sp. OAS795 ABID97_RS04810 THUMP domain-containing protein insig. 30 55
  Ralstonia solanacearum GMI1000 RS_RS13705 class I SAM-dependent RNA methyltransferase sig. 35 45
  Ralstonia solanacearum PSI07 RPSI07_RS11485 class I SAM-dependent RNA methyltransferase sig. 35 45
  Azospirillum sp. SherDot2 MPMX19_05468 Ribosomal RNA large subunit methyltransferase L insig. 30 50
  Phaeobacter inhibens DSM 17395 PGA1_c05240 Predicted N6-adenine-specific DNA methylase insig. 29 50
  Ralstonia sp. UNC404CL21Col ABZR87_RS01385 class I SAM-dependent RNA methyltransferase insig. 34 45
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS05815 class I SAM-dependent RNA methyltransferase strong 33 45
  Ralstonia solanacearum UW163 UW163_RS07810 class I SAM-dependent RNA methyltransferase insig. 33 45
  Dinoroseobacter shibae DFL-12 Dshi_2577 putative RNA methylase (RefSeq) insig. 31 50
  Variovorax sp. SCN45 GFF7643 23S rRNA (guanine(2445)-N(2))-methyltransferase (EC 2.1.1.173) / 23S rRNA (guanine(2069)-N(7))-methyltransferase (EC 2.1.1.264) no data 44 26
  Pseudomonas putida KT2440 PP_5127 ribosomal RNA large subunit methyltransferase I insig. 34 34
  Pseudomonas sp. BP01 JOY50_RS20750 class I SAM-dependent rRNA methyltransferase insig. 34 34
  Shewanella loihica PV-4 Shew_3324 hypothetical protein (RefSeq) insig. 38 20
  Pseudomonas fluorescens FW300-N2C3 AO356_13260 SAM-dependent methyltransferase insig. 33 34