Conservation of cofitness between Xcc-8004.4046.1 and Xcc-8004.2954.1 in Xanthomonas campestris pv. campestris strain 8004

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.4046.1 ATP-dependent protease La (EC 3.4.21.53) Type I 1.0 Xcc-8004.2954.1 Threonine synthase (EC 4.2.3.1) 0.56 20
Lysobacter sp. OAE881 0.82 ABIE51_RS14145 endopeptidase La 0.56 ABIE51_RS17530 threonine synthase low > 62
Dyella japonica UNC79MFTsu3.2 0.74 ABZR86_RS07320 endopeptidase La 0.61 ABZR86_RS15975 threonine synthase (EC 4.2.3.1) (from data) low > 74
Rhodanobacter sp. FW510-T8 0.73 OKGIIK_08030 lon endopeptidase La 0.63 OKGIIK_13570 thrC threonine synthase low > 52
Rhodanobacter denitrificans FW104-10B01 0.73 LRK54_RS16735 endopeptidase La 0.61 LRK54_RS10355 threonine synthase low > 59
Rhodanobacter denitrificans MT42 0.73 LRK55_RS16460 endopeptidase La 0.61 LRK55_RS09995 threonine synthase low > 63
Shewanella loihica PV-4 0.66 Shew_2506 ATP-dependent protease La (RefSeq) 0.30 Shew_1081 threonine synthase (RefSeq) — —
Shewanella sp. ANA-3 0.65 Shewana3_2659 Lon-A peptidase (RefSeq) 0.29 Shewana3_1141 threonine synthase (RefSeq) — —
Shewanella oneidensis MR-1 0.65 SO1796 lon ATP-dependent protease La (NCBI ptt file) 0.29 SO3413 thrC threonine synthase (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.65 Sama_1226 endopeptidase La (RefSeq) 0.30 Sama_0907 threonine synthase (RefSeq) low > 62
Pseudomonas fluorescens FW300-N2C3 0.65 AO356_01740 DNA-binding protein 0.29 AO356_06370 threonine synthase — —
Pseudomonas stutzeri RCH2 0.65 Psest_2285 ATP-dependent protease La 0.28 Psest_3125 threonine synthase — —
Ralstonia solanacearum GMI1000 0.65 RS_RS08655 endopeptidase La 0.20 RS_RS06660 threonine synthase — —
Ralstonia solanacearum PSI07 0.65 RPSI07_RS16135 endopeptidase La 0.19 RPSI07_RS17485 threonine synthase — —
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_2216 ATP-dependent protease La (EC 3.4.21.53) Type I 0.29 Pf6N2E2_3142 Threonine synthase (EC 4.2.3.1) — —
Ralstonia solanacearum IBSBF1503 0.65 RALBFv3_RS01340 endopeptidase La 0.19 RALBFv3_RS15880 threonine synthase — —
Ralstonia solanacearum UW163 0.65 UW163_RS14650 endopeptidase La 0.19 UW163_RS13325 threonine synthase — —
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS12785 endopeptidase La 0.21 ABZR87_RS05865 threonine synthase low > 80
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_3947 ATP-dependent protease La (EC 3.4.21.53) Type I 0.29 Pf1N1B4_3014 Threonine synthase (EC 4.2.3.1) — —
Pseudomonas fluorescens FW300-N2E3 0.64 AO353_20185 DNA-binding protein 0.29 AO353_04350 threonine synthase — —
Dickeya dadantii 3937 0.64 DDA3937_RS05650 endopeptidase La 0.32 DDA3937_RS18405 threonine synthase low > 74
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_2554 ATP-dependent protease La (EC 3.4.21.53) Type I 0.28 PfGW456L13_1724 Threonine synthase (EC 4.2.3.1) — —
Klebsiella michiganensis M5al 0.64 BWI76_RS06535 endopeptidase La 0.31 BWI76_RS04255 threonine synthase low > 92
Pseudomonas sp. RS175 0.64 PFR28_01230 Lon protease 0.28 PFR28_00334 Threonine synthase — —
Pseudomonas fluorescens SBW25-INTG 0.64 PFLU_RS19160 endopeptidase La 0.29 PFLU_RS24545 threonine synthase — —
Pseudomonas fluorescens SBW25 0.64 PFLU_RS19160 endopeptidase La 0.29 PFLU_RS24545 threonine synthase low > 109
Pectobacterium carotovorum WPP14 0.64 HER17_RS15840 endopeptidase La 0.29 HER17_RS02805 threonine synthase — —
Dickeya dianthicola ME23 0.64 DZA65_RS06020 endopeptidase La 0.31 DZA65_RS19475 threonine synthase low > 75
Pseudomonas simiae WCS417 0.64 PS417_17225 DNA-binding protein 0.29 PS417_22880 threonine synthase — —
Dickeya dianthicola 67-19 0.64 HGI48_RS05695 endopeptidase La 0.31 HGI48_RS18335 threonine synthase low > 71
Alteromonas macleodii MIT1002 0.64 MIT1002_02757 Lon protease 0.31 MIT1002_03084 Threonine synthase low > 70
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_09605 endopeptidase La 0.32 CSW01_11965 threonine synthase low > 62
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 0.29 Psyr_1291 L-threonine synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 0.29 Psyr_1291 L-threonine synthase — —
Dechlorosoma suillum PS 0.64 Dsui_2198 ATP-dependent protease La 0.23 Dsui_2904 threonine synthase — —
Pantoea sp. MT58 0.64 IAI47_14645 endopeptidase La 0.30 IAI47_16205 threonine synthase — —
Pseudomonas sp. S08-1 0.64 OH686_03635 endopeptidase La 0.28 OH686_17765 threonine synthase low > 80
Enterobacter sp. TBS_079 0.64 MPMX20_01030 Lon protease 0.31 MPMX20_00712 Threonine synthase low > 85
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS12905 peptidase 0.20 HSERO_RS10470 threonine synthase — —
Escherichia coli ECOR27 0.64 NOLOHH_01255 lon_P403L Lon protease 0.30 NOLOHH_03430 thrC threonine synthase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF4355 ATP-dependent protease La (EC 3.4.21.53) Type I 0.30 GFF1080 Threonine synthase (EC 4.2.3.1) low > 78
Escherichia coli ECOR38 0.64 HEPCGN_06935 lon_P403L Lon protease 0.30 HEPCGN_09105 thrC threonine synthase low > 87
Escherichia coli ECRC62 0.64 BNILDI_22670 lon_P403L Lon protease 0.30 BNILDI_08170 thrC threonine synthase low > 75
Serratia liquefaciens MT49 0.64 IAI46_05020 endopeptidase La 0.31 IAI46_03040 threonine synthase low > 86
Escherichia coli Nissle 1917 0.64 ECOLIN_RS02635 endopeptidase La 0.30 ECOLIN_RS00020 threonine synthase low > 55
Pseudomonas putida KT2440 0.64 PP_2302 DNA-binding, ATP-dependent protease 0.29 PP_1471 Threonine synthase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_03234 Lon protease 0.30 OHPLBJKB_03656 Threonine synthase low > 73
Enterobacter asburiae PDN3 0.64 EX28DRAFT_2531 endopeptidase La 0.31 EX28DRAFT_3616 threonine synthase low > 76
Escherichia fergusonii Becca 0.64 EFB2_03618 Lon protease 0.30 EFB2_04039 Threonine synthase low > 86
Erwinia tracheiphila SCR3 0.64 LU632_RS18335 lon endopeptidase La 0.31 LU632_RS02620 thrC threonine synthase — —
Escherichia coli BL21 0.64 ECD_00391 DNA-binding ATP-dependent protease La 0.30 ECD_00004 L-threonine synthase low > 61
Escherichia coli BW25113 0.64 b0439 lon DNA-binding ATP-dependent protease La (NCBI) 0.30 b0004 thrC threonine synthase (NCBI) low > 76
Escherichia coli ECRC100 0.63 OKFHMN_08320 Lon protease 0.30 OKFHMN_11100 thrC threonine synthase low > 80
Escherichia coli ECRC102 0.63 NIAGMN_06375 Lon protease 0.30 NIAGMN_08950 thrC threonine synthase — —
Escherichia coli ECRC98 0.63 JDDGAC_11975 Lon protease 0.30 JDDGAC_14695 thrC threonine synthase low > 86
Escherichia coli ECRC101 0.63 MCAODC_27545 Lon protease 0.30 MCAODC_01615 thrC threonine synthase low > 87
Escherichia coli ECRC99 0.63 KEDOAH_19645 Lon protease 0.30 KEDOAH_17055 thrC threonine synthase — —
Marinobacter adhaerens HP15 0.63 HP15_2183 DNA-binding ATP-dependent protease La 0.25 HP15_765 threonine synthase — —
Rahnella sp. WP5 0.63 EX31_RS22255 endopeptidase La 0.31 EX31_RS03935 threonine synthase low > 89
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS21975 endopeptidase La 0.21 QEN71_RS22400 threonine synthase low > 153
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS09030 DNA-binding protein 0.20 RR42_RS12535 threonine synthase — —
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS09460 peptidase 0.19 BPHYT_RS08960 threonine synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_00898 ATP-dependent proteinase. Serine peptidase. MEROPS family S16 0.20 H281DRAFT_00811 L-threonine synthase — —
Azospirillum brasilense Sp245 0.62 AZOBR_RS07145 peptidase 0.26 AZOBR_RS10545 threonine synthase — —
Azospirillum sp. SherDot2 0.62 MPMX19_01545 Lon protease 0.27 MPMX19_00671 Threonine synthase — —
Acidovorax sp. GW101-3H11 0.62 Ac3H11_937 ATP-dependent protease La (EC 3.4.21.53) Type I 0.21 Ac3H11_1505 Threonine synthase (EC 4.2.3.1) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF4044 ATP-dependent protease La (EC 3.4.21.53) Type I 0.21 GFF3936 Threonine synthase (EC 4.2.3.1) — —
Variovorax sp. OAS795 0.61 ABID97_RS17590 endopeptidase La 0.21 ABID97_RS10895 threonine synthase — —
Castellaniella sp019104865 MT123 0.61 ABCV34_RS05125 endopeptidase La 0.23 ABCV34_RS02300 threonine synthase — —
Paraburkholderia graminis OAS925 0.61 ABIE53_002117 ATP-dependent Lon protease 0.20 ABIE53_002027 threonine synthase — —
Rhodospirillum rubrum S1H 0.61 Rru_A1552 Peptidase S16, ATP-dependent protease La (NCBI) 0.28 Rru_A3233 Threonine synthase (NCBI) — —
Magnetospirillum magneticum AMB-1 0.60 AMB_RS14035 endopeptidase La 0.28 AMB_RS17140 threonine synthase — —
Caulobacter crescentus NA1000 0.60 CCNA_02037 ATP-dependent endopeptidase Lon 0.26 CCNA_03510 threonine synthase — —
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_02037 ATP-dependent endopeptidase Lon 0.26 CCNA_03510 threonine synthase — —
Agrobacterium fabrum C58 0.59 Atu1261 ATP-dependent protease LA 0.26 Atu0787 threonine synthase — —
Rhodopseudomonas palustris CGA009 0.59 TX73_015345 endopeptidase La 0.25 TX73_004325 threonine synthase — —
Rhizobium sp. OAE497 0.58 ABIE40_RS07100 endopeptidase La 0.27 ABIE40_RS04230 threonine synthase — —
Sinorhizobium meliloti 1021 0.58 SMc01905 ATP-dependent protease LA protein 0.26 SMc00077 threonine synthase — —
Bosea sp. OAE506 0.58 ABIE41_RS18050 endopeptidase La 0.27 ABIE41_RS22985 threonine synthase — —
Phaeobacter inhibens DSM 17395 0.57 PGA1_c20540 ATP-dependent protease La 0.28 PGA1_c06310 threonine synthase ThrC — —
Brevundimonas sp. GW460-12-10-14-LB2 0.57 A4249_RS06460 endopeptidase La 0.25 A4249_RS00020 threonine synthase — —
Dinoroseobacter shibae DFL-12 0.56 Dshi_1777 ATP-dependent protease La (RefSeq) 0.27 Dshi_1146 threonine synthase (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_0102 endopeptidase La 0.24 Ga0059261_1999 threonine synthase low > 68
Mucilaginibacter yixingensis YX-36 DSM 26809 0.42 ABZR88_RS15670 endopeptidase La 0.35 ABZR88_RS18960 threonine synthase — —
Bacteroides stercoris CC31F 0.41 HMPREF1181_RS14340 endopeptidase La 0.35 HMPREF1181_RS00050 threonine synthase low > 56
Echinicola vietnamensis KMM 6221, DSM 17526 0.41 Echvi_4670 ATP-dependent protease La 0.35 Echvi_2002 threonine synthase low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS14555 endopeptidase La 0.35 CA265_RS23465 threonine synthase 0.42 85
Parabacteroides merdae CL09T00C40 0.40 HMPREF1078_RS16185 endopeptidase La 0.34 HMPREF1078_RS10395 threonine synthase low > 61
Bacteroides ovatus ATCC 8483 0.39 BACOVA_02571 endopeptidase La 0.35 BACOVA_03023 threonine synthase low > 94
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS01210 endopeptidase La 0.34 HMPREF1058_RS14730 threonine synthase low > 67
Phocaeicola dorei CL03T12C01 0.39 ABI39_RS16520 endopeptidase La 0.34 ABI39_RS10440 threonine synthase low > 72

Not shown: 7 genomes with orthologs for Xcc-8004.4046.1 only; 2 genomes with orthologs for Xcc-8004.2954.1 only