Conservation of cofitness between SMc00618 and SMc01858 in Sinorhizobium meliloti 1021

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sinorhizobium meliloti 1021 1.0 SMc00618 polyphosphate kinase 1.0 SMc01858 S-adenosyl-methyltransferase MraW 0.67 3
Rhizobium sp. OAE497 0.86 ABIE40_RS06575 RNA degradosome polyphosphate kinase 0.76 ABIE40_RS11875 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH low > 107
Agrobacterium fabrum C58 0.85 Atu1144 polyphosphate kinase 0.82 Atu2102 S-adenosyl methionine-dependent methytransferase — —
Rhodopseudomonas palustris CGA009 0.63 TX73_015770 RNA degradosome polyphosphate kinase 0.49 TX73_018335 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH low > 86
Bosea sp. OAE506 0.61 ABIE41_RS16125 RNA degradosome polyphosphate kinase 0.48 ABIE41_RS12560 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH low > 77
Azospirillum sp. SherDot2 0.59 MPMX19_01149 Polyphosphate kinase 0.40 MPMX19_01670 Ribosomal RNA small subunit methyltransferase H — —
Azospirillum brasilense Sp245 0.57 AZOBR_RS16235 polyphosphate kinase 0.39 AZOBR_RS12280 16S rRNA methyltransferase — —
Magnetospirillum magneticum AMB-1 0.55 AMB_RS14295 RNA degradosome polyphosphate kinase 0.41 AMB_RS19435 ribosomal RNA small subunit methyltransferase H — —
Caulobacter crescentus NA1000 Δfur 0.55 CCNA_01782 polyphosphate kinase 1 0.43 CCNA_02645 S-adenosyl-methyltransferase MraW low > 67
Caulobacter crescentus NA1000 0.55 CCNA_01782 polyphosphate kinase 1 0.43 CCNA_02645 S-adenosyl-methyltransferase MraW — —
Rhodospirillum rubrum S1H 0.55 Rru_A2161 Polyphosphate kinase (NCBI) 0.42 Rru_A0958 methyltransferase (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.53 A4249_RS08195 RNA degradosome polyphosphate kinase 0.47 A4249_RS01485 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Sphingomonas koreensis DSMZ 15582 0.52 Ga0059261_0225 polyphosphate kinase 1 0.42 Ga0059261_3455 16S rRNA (cytosine(1402)-N(4))-methyltransferase — —
Dinoroseobacter shibae DFL-12 0.51 Dshi_0740 Polyphosphate kinase (RefSeq) 0.38 Dshi_2474 S-adenosyl-methyltransferase MraW (RefSeq) low > 64
Synechococcus elongatus PCC 7942 0.39 Synpcc7942_1566 ppk polyphosphate kinase 0.29 Synpcc7942_0975 mraW S-adenosyl-methyltransferase MraW low > 38
Bifidobacterium breve UCC2003 0.38 BBR_RS19645 RNA degradosome polyphosphate kinase 0.29 BBR_RS16955 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH low > 34
Mycobacterium tuberculosis H37Rv 0.36 Rv2984 Polyphosphate kinase PPK (polyphosphoric acid kinase) (ATP-polyphosphate phosphotransferase) 0.29 Rv2165c Conserved protein — —
Dechlorosoma suillum PS 0.35 Dsui_2814 polyphosphate kinase 1 0.32 Dsui_0245 S-adenosyl-methyltransferase MraW low > 51
Pseudomonas sp. S08-1 0.35 OH686_13995 polyphosphate kinase 1 0.34 OH686_08330 16S rRNA (cytosine(1402)-N(4))-methyltransferase — —
Acinetobacter radioresistens SK82 0.35 MPMX26_02335 Polyphosphate kinase 0.29 MPMX26_02824 Ribosomal RNA small subunit methyltransferase H low > 36
Pseudomonas stutzeri RCH2 0.34 Psest_3732 polyphosphate kinase 1 0.35 Psest_3267 S-adenosyl-methyltransferase MraW — —
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_08995 ppk1 RNA degradosome polyphosphate kinase 0.34 OKGIIK_11720 rsmH 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS16000 polyphosphate kinase 1 0.33 LRK54_RS12205 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Rhodanobacter denitrificans MT42 0.33 LRK55_RS15755 polyphosphate kinase 1 0.33 LRK55_RS11940 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS07490 polyphosphate kinase 1 0.33 ABZR86_RS11365 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Pseudomonas putida KT2440 0.33 PP_5217 Polyphosphate kinase 0.33 PP_1329 Ribosomal RNA small subunit methyltransferase H — —
Herbaspirillum seropedicae SmR1 0.33 HSERO_RS06305 polyphosphate kinase 0.26 HSERO_RS01625 16S rRNA methyltransferase — —
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_874 Polyphosphate kinase (EC 2.7.4.1) 0.34 PfGW456L13_1645 rRNA small subunit methyltransferase H — —
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS31480 polyphosphate kinase 0.29 RR42_RS18115 16S rRNA methyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_08885 polyphosphate kinase 0.34 AO353_15300 ribosomal RNA small subunit methyltransferase H — —
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_12895 polyphosphate kinase 0.34 AO356_17120 ribosomal RNA small subunit methyltransferase H — —
Pseudomonas sp. RS175 0.32 PFR28_04345 Polyphosphate kinase 0.34 PFR28_03595 Ribosomal RNA small subunit methyltransferase H — —
Pseudomonas simiae WCS417 0.32 PS417_27435 polyphosphate kinase 0.33 PS417_04600 16S rRNA methyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_2208 Polyphosphate kinase (EC 2.7.4.1) 0.34 Pf1N1B4_951 rRNA small subunit methyltransferase H — —
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_2312 polyphosphate kinase 1 0.32 B158DRAFT_2114 S-adenosyl-methyltransferase MraW low > 40
Paraburkholderia bryophila 376MFSha3.1 0.32 H281DRAFT_04418 polyphosphate kinase 0.30 H281DRAFT_06230 16S rRNA (cytosine1402-N4)-methyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS29095 polyphosphate kinase 1 0.33 PFLU_RS04665 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Pseudomonas fluorescens SBW25 0.32 PFLU_RS29095 polyphosphate kinase 1 0.33 PFLU_RS04665 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_0293 Polyphosphate kinase 0.32 Psyr_4110 methyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_0293 Polyphosphate kinase 0.32 Psyr_4110 methyltransferase — —
Ralstonia solanacearum IBSBF1503 0.32 RALBFv3_RS02115 polyphosphate kinase 1 0.28 RALBFv3_RS06315 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Ralstonia solanacearum UW163 0.32 UW163_RS15425 polyphosphate kinase 1 0.28 UW163_RS07310 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS04860 polyphosphate kinase 1 0.31 QEN71_RS27435 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Paraburkholderia graminis OAS925 0.32 ABIE53_002988 polyphosphate kinase 0.30 ABIE53_003621 16S rRNA (cytosine1402-N4)-methyltransferase — —
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS14110 polyphosphate kinase 0.31 BPHYT_RS17275 16S rRNA methyltransferase — —
Marinobacter adhaerens HP15 0.32 HP15_3334 polyphosphate kinase 0.32 HP15_556 S-adenosyl-L-methionine-dependent methyltransferase mraW low > 73
Ralstonia sp. UNC404CL21Col 0.31 ABZR87_RS14065 polyphosphate kinase 1 0.29 ABZR87_RS01980 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH low > 80
Ralstonia solanacearum PSI07 0.31 RPSI07_RS15330 polyphosphate kinase 1 0.28 RPSI07_RS10925 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Castellaniella sp019104865 MT123 0.31 ABCV34_RS15580 polyphosphate kinase 1 0.29 ABCV34_RS09685 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Ralstonia solanacearum GMI1000 0.31 RS_RS07705 polyphosphate kinase 1 0.27 RS_RS14265 ribosomal RNA small subunit methyltransferase H — —
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.4064.1 Polyphosphate kinase (EC 2.7.4.1) 0.32 Xcc-8004.4363.1 rRNA small subunit methyltransferase H — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.29 CA264_11200 RNA degradosome polyphosphate kinase 0.28 CA264_10865 16S rRNA (cytosine(1402)-N(4))-methyltransferase — —
Variovorax sp. SCN45 0.29 GFF1089 Polyphosphate kinase (EC 2.7.4.1) 0.29 GFF4481 16S rRNA (cytosine(1402)-N(4))-methyltransferase (EC 2.1.1.199) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF4226 Polyphosphate kinase (EC 2.7.4.1) 0.32 GFF555 rRNA small subunit methyltransferase H — —
Variovorax sp. OAS795 0.28 ABID97_RS14575 polyphosphate kinase 1 0.26 ABID97_RS06195 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH low > 91
Acidovorax sp. GW101-3H11 0.28 Ac3H11_452 Polyphosphate kinase (EC 2.7.4.1) 0.30 Ac3H11_2007 rRNA small subunit methyltransferase H — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_2996 polyphosphate kinase 1 0.29 Echvi_0317 S-adenosyl-methyltransferase MraW — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.26 ABZR88_RS04845 polyphosphate kinase 1 0.27 ABZR88_RS03865 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS09830 polyphosphate kinase 1 0.25 CA265_RS01965 16S rRNA (cytosine(1402)-N(4))-methyltransferase — —
Bacteroides stercoris CC31F 0.25 HMPREF1181_RS08035 RNA degradosome polyphosphate kinase 0.25 HMPREF1181_RS02780 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Escherichia coli ECRC101 0.25 MCAODC_12330 ppk1 polyphosphate kinase 1 0.33 MCAODC_01190 rsmH 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Escherichia coli ECOR27 0.25 NOLOHH_13450 ppk1 polyphosphate kinase 1 0.33 NOLOHH_03020 rsmH 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Escherichia coli BL21 0.25 ECD_02393 polyphosphate kinase, component of RNA degradosome 0.33 ECD_00083 16S rRNA m(4)C1402 methyltransferase, SAM-dependent — —
Escherichia coli Nissle 1917 0.25 ECOLIN_RS14200 polyphosphate kinase 1 0.33 ECOLIN_RS00440 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Escherichia coli ECRC62 0.25 BNILDI_12260 ppk1 polyphosphate kinase 1 0.33 BNILDI_08590 rsmH 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Escherichia coli ECOR38 0.25 HEPCGN_20965 ppk1 polyphosphate kinase 1 0.33 HEPCGN_08655 rsmH 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Escherichia coli ECRC98 0.25 JDDGAC_25745 ppk1 polyphosphate kinase 1 0.33 JDDGAC_14270 rsmH 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Escherichia coli ECRC102 0.25 NIAGMN_19570 ppk1 polyphosphate kinase 1 0.33 NIAGMN_08525 rsmH 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Escherichia coli BW25113 0.25 b2501 ppk polyphosphate kinase (NCBI) 0.33 b0082 mraW S-adenosyl-methyltransferase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.25 OHPLBJKB_01225 Polyphosphate kinase 0.33 OHPLBJKB_03577 Ribosomal RNA small subunit methyltransferase H — —
Escherichia coli ECRC101 0.25 OKFHMN_21800 ppk1 polyphosphate kinase 1 0.33 OKFHMN_10675 rsmH 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Escherichia coli ECRC99 0.25 KEDOAH_06420 ppk1 polyphosphate kinase 1 0.33 KEDOAH_17480 rsmH 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Escherichia fergusonii Becca 0.25 EFB2_01397 Polyphosphate kinase 0.33 EFB2_03965 Ribosomal RNA small subunit methyltransferase H low > 86
Shewanella amazonensis SB2B 0.25 Sama_2011 polyphosphate kinase (RefSeq) 0.34 Sama_0346 mraW S-adenosyl-methyltransferase MraW (RefSeq) — —
Serratia liquefaciens MT49 0.25 IAI46_18915 polyphosphate kinase 1 0.32 IAI46_03400 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Phocaeicola dorei CL03T12C01 0.25 ABI39_RS01585 RNA degradosome polyphosphate kinase 0.29 ABI39_RS04315 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Pectobacterium carotovorum WPP14 0.25 HER17_RS06425 polyphosphate kinase 1 0.33 HER17_RS03120 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS16770 RNA degradosome polyphosphate kinase 0.27 HMPREF1078_RS04665 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH low > 61
Phocaeicola vulgatus CL09T03C04 0.25 HMPREF1058_RS02340 RNA degradosome polyphosphate kinase 0.30 HMPREF1058_RS12430 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH — —
Shewanella loihica PV-4 0.24 Shew_3079 polyphosphate kinase (RefSeq) 0.35 Shew_3461 mraW S-adenosyl-methyltransferase MraW (RefSeq) — —
Enterobacter sp. TBS_079 0.24 MPMX20_03356 Polyphosphate kinase 0.33 MPMX20_00775 Ribosomal RNA small subunit methyltransferase H low > 85
Enterobacter asburiae PDN3 0.24 EX28DRAFT_0166 polyphosphate kinase 1 0.33 EX28DRAFT_3677 16S rRNA (cytosine(1402)-N(4))-methyltransferase — —
Shewanella sp. ANA-3 0.24 Shewana3_2417 polyphosphate kinase (RefSeq) 0.34 Shewana3_3751 mraW S-adenosyl-methyltransferase MraW (RefSeq) — —
Erwinia tracheiphila SCR3 0.24 LU632_RS08260 ppk1 polyphosphate kinase 1 0.32 LU632_RS02910 rsmH 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH low > 74
Klebsiella michiganensis M5al 0.24 BWI76_RS20995 RNA degradosome polyphosphate kinase 0.33 BWI76_RS04720 16S rRNA (cytosine(1402)-N(4))-methyltransferase — —
Dickeya dadantii 3937 0.24 DDA3937_RS15150 polyphosphate kinase 1 0.32 DDA3937_RS18080 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH low > 74
Rahnella sp. WP5 0.24 EX31_RS22680 polyphosphate kinase 1 0.34 EX31_RS03645 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH low > 89
Bacteroides thetaiotaomicron VPI-5482 0.24 BT0541 Polyphosphate kinase (NCBI ptt file) 0.26 BT3455 S-adenosyl-methyltransferase mraW (NCBI ptt file) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF2167 Polyphosphate kinase (EC 2.7.4.1) 0.34 GFF156 rRNA small subunit methyltransferase H low > 78
Dickeya dianthicola ME23 0.24 DZA65_RS16045 polyphosphate kinase 1 0.32 DZA65_RS19160 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH low > 75
Dickeya dianthicola 67-19 0.23 HGI48_RS15225 polyphosphate kinase 1 0.32 HGI48_RS18015 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH low > 71
Pantoea sp. MT58 0.23 IAI47_05155 polyphosphate kinase 1 0.32 IAI47_15970 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH low > 76
Vibrio cholerae E7946 ATCC 55056 0.23 CSW01_03780 polyphosphate kinase 1 0.31 CSW01_12200 ribosomal RNA small subunit methyltransferase H low > 62
Bacteroides ovatus ATCC 8483 0.23 BACOVA_03769 polyphosphate kinase 1 0.25 BACOVA_01850 S-adenosyl-methyltransferase MraW — —
Alteromonas macleodii MIT1002 0.22 MIT1002_00872 Polyphosphate kinase 0.34 MIT1002_03033 Ribosomal RNA small subunit methyltransferase H low > 70

Not shown: 2 genomes with orthologs for SMc00618 only; 5 genomes with orthologs for SMc01858 only