Conservation of cofitness between RR42_RS07325 and RR42_RS17390 in Cupriavidus basilensis FW507-4G11

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS07325 exodeoxyribonuclease III 1.0 RR42_RS17390 ATP-dependent DNA helicase RecG 0.69 5
Ralstonia sp. UNC404CL21Col 0.74 ABZR87_RS13495 exodeoxyribonuclease III 0.71 ABZR87_RS01270 ATP-dependent DNA helicase RecG 0.59 11
Ralstonia solanacearum GMI1000 0.74 RS_RS08025 exodeoxyribonuclease III 0.72 RS_RS13565 DNA helicase RecG — —
Ralstonia solanacearum IBSBF1503 0.74 RALBFv3_RS01700 exodeoxyribonuclease III 0.72 RALBFv3_RS05675 DNA helicase RecG 0.27 60
Ralstonia solanacearum UW163 0.74 UW163_RS15010 exodeoxyribonuclease III 0.72 UW163_RS07950 DNA helicase RecG — —
Ralstonia solanacearum PSI07 0.73 RPSI07_RS15785 exodeoxyribonuclease III 0.71 RPSI07_RS11625 DNA helicase RecG low > 81
Paraburkholderia graminis OAS925 0.67 ABIE53_002802 exodeoxyribonuclease-3 0.62 ABIE53_000833 ATP-dependent DNA helicase RecG low > 113
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS12925 exodeoxyribonuclease III 0.63 BPHYT_RS03400 ATP-dependent DNA helicase RecG low > 109
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_00456 Exodeoxyribonuclease III 0.62 H281DRAFT_04672 ATP-dependent DNA helicase RecG low > 103
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS05680 exodeoxyribonuclease III 0.61 QEN71_RS26630 ATP-dependent DNA helicase RecG — —
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS15630 exodeoxyribonuclease III 0.61 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.48 21
Castellaniella sp019104865 MT123 0.59 ABCV34_RS03115 exodeoxyribonuclease III 0.48 ABCV34_RS03570 ATP-dependent DNA helicase RecG low > 48
Acidovorax sp. GW101-3H11 0.57 Ac3H11_4433 Exodeoxyribonuclease III (EC 3.1.11.2) 0.52 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) — —
Variovorax sp. SCN45 0.57 GFF3064 Exodeoxyribonuclease III (EC 3.1.11.2) 0.48 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.58 68
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF5268 Exodeoxyribonuclease III (EC 3.1.11.2) 0.52 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.76 10
Variovorax sp. OAS795 0.56 ABID97_RS09955 exodeoxyribonuclease III 0.51 ABID97_RS01575 ATP-dependent DNA helicase RecG low > 91
Dyella japonica UNC79MFTsu3.2 0.56 ABZR86_RS14930 exodeoxyribonuclease III 0.43 ABZR86_RS11840 ATP-dependent DNA helicase RecG low > 74
Dechlorosoma suillum PS 0.55 Dsui_0044 exodeoxyribonuclease III 0.54 Dsui_0311 ATP-dependent DNA helicase RecG 0.60 5
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_15390 xth exodeoxyribonuclease III 0.42 OKGIIK_12090 recG ATP-dependent DNA helicase RecG low > 52
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS08625 exodeoxyribonuclease III 0.42 LRK54_RS11805 ATP-dependent DNA helicase RecG low > 59
Rhodanobacter denitrificans MT42 0.51 LRK55_RS08390 exodeoxyribonuclease III 0.42 LRK55_RS11530 ATP-dependent DNA helicase RecG low > 63
Lysobacter sp. OAE881 0.50 ABIE51_RS01755 exodeoxyribonuclease III 0.43 ABIE51_RS17230 ATP-dependent DNA helicase RecG low > 62
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.5140.1 Exodeoxyribonuclease III (EC 3.1.11.2) 0.42 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 74
Synechococcus elongatus PCC 7942 0.44 Synpcc7942_2607 xthA Exodeoxyribonuclease III 0.31 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG — —
Magnetospirillum magneticum AMB-1 0.39 AMB_RS12755 exodeoxyribonuclease III 0.30 AMB_RS12400 ATP-dependent DNA helicase RecG — —
Agrobacterium fabrum C58 0.39 Atu5048 exodeoxyribonuclease III 0.30 Atu1780 ATP-dependent DNA helicase low > 89
Rhizobium sp. OAE497 0.38 ABIE40_RS08420 exodeoxyribonuclease III 0.31 ABIE40_RS09300 ATP-dependent DNA helicase RecG low > 107
Bosea sp. OAE506 0.38 ABIE41_RS15705 exodeoxyribonuclease III 0.28 ABIE41_RS15815 ATP-dependent DNA helicase RecG 0.51 54
Azospirillum brasilense Sp245 0.38 AZOBR_RS15540 exodeoxyribonuclease III 0.30 AZOBR_RS09850 ATP-dependent DNA helicase RecG 0.53 36
Azospirillum sp. SherDot2 0.37 MPMX19_04331 Exodeoxyribonuclease 0.31 MPMX19_00951 ATP-dependent DNA helicase RecG — —
Sinorhizobium meliloti 1021 0.36 SMc02077 exodeoxyribonuclease III protein 0.30 SMc00228 ATP-dependent DNA helicase RecG 0.56 4
Rhodopseudomonas palustris CGA009 0.36 TX73_014820 exodeoxyribonuclease III 0.28 TX73_013795 ATP-dependent DNA helicase RecG low > 86
Pedobacter sp. GW460-11-11-14-LB5 0.35 CA265_RS16670 exodeoxyribonuclease III 0.28 CA265_RS22835 ATP-dependent DNA helicase RecG low > 88
Brevundimonas sp. GW460-12-10-14-LB2 0.35 A4249_RS02655 exodeoxyribonuclease III 0.30 A4249_RS04765 ATP-dependent DNA helicase RecG low > 48
Caulobacter crescentus NA1000 0.35 CCNA_02090 exodeoxyribonuclease III 0.30 CCNA_01504 ATP-dependent DNA helicase recG low > 66
Rhodospirillum rubrum S1H 0.35 Rru_A1784 exodeoxyribonuclease III xth (NCBI) 0.28 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) — —
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_02090 exodeoxyribonuclease III 0.30 CCNA_01504 ATP-dependent DNA helicase recG — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.34 ABZR88_RS19760 exodeoxyribonuclease III 0.29 ABZR88_RS17240 ATP-dependent DNA helicase RecG low > 71
Pseudomonas sp. RS175 0.34 PFR28_01207 Exodeoxyribonuclease III 0.43 PFR28_04435 ATP-dependent DNA helicase RecG low > 88
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_2237 Exodeoxyribonuclease III (EC 3.1.11.2) 0.43 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_01850 exodeoxyribonuclease III 0.43 AO356_12380 ATP-dependent DNA helicase RecG low > 104
Pseudomonas stutzeri RCH2 0.34 Psest_1187 exodeoxyribonuclease III 0.43 Psest_4192 ATP-dependent DNA helicase RecG — —
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_38 Exodeoxyribonuclease III (EC 3.1.11.2) 0.43 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 87
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_3967 Exodeoxyribonuclease III (EC 3.1.11.2) 0.43 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 87
Pseudomonas putida KT2440 0.32 PP_2707 putative Exodeoxyribonuclease III 0.44 PP_5310 junction-specific ATP-dependent DNA helicase low > 96
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_3499 exodeoxyribonuclease III 0.28 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 68
Dinoroseobacter shibae DFL-12 0.32 Dshi_1886 exodeoxyribonuclease III Xth (RefSeq) 0.31 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) low > 64
Pseudomonas sp. S08-1 0.32 OH686_23775 exodeoxyribonuclease III 0.43 OH686_13505 ATP-dependent DNA helicase RecG low > 80
Phaeobacter inhibens DSM 17395 0.31 PGA1_c11070 exodeoxyribonuclease III 0.30 PGA1_c14380 ATP-dependent DNA helicase RecG low > 62
Mycobacterium tuberculosis H37Rv 0.30 Rv0427c Probable exodeoxyribonuclease III protein XthA (exonuclease III) (EXO III) (AP endonuclease VI) 0.24 Rv2973c Probable ATP-dependent DNA helicase RecG low > 58
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_09315 exodeoxyribonuclease III 0.41 CSW01_13680 DNA helicase RecG low > 62
Enterobacter sp. TBS_079 0.28 MPMX20_01864 Exodeoxyribonuclease III 0.41 MPMX20_00084 ATP-dependent DNA helicase RecG 0.28 3
Escherichia coli Nissle 1917 0.28 ECOLIN_RS09750 exodeoxyribonuclease III 0.41 ECOLIN_RS20800 ATP-dependent DNA helicase RecG low > 55
Escherichia fergusonii Becca 0.28 EFB2_02244 Exodeoxyribonuclease III 0.41 EFB2_00136 ATP-dependent DNA helicase RecG low > 86
Escherichia coli ECRC100 0.27 OKFHMN_26900 xthA exodeoxyribonuclease III 0.41 OKFHMN_15545 recG ATP-dependent DNA helicase RecG low > 80
Escherichia coli BW25113 0.27 b1749 xthA exonuclease III (NCBI) 0.41 b3652 recG ATP-dependent DNA helicase (NCBI) 0.19 33
Escherichia coli ECRC102 0.27 NIAGMN_01165 xthA exodeoxyribonuclease III 0.41 NIAGMN_13305 recG ATP-dependent DNA helicase RecG — —
Escherichia coli BL21 0.27 ECD_01718 exonuclease III 0.41 ECD_03509 ATP-dependent DNA helicase — —
Escherichia coli ECRC101 0.27 MCAODC_18510 xthA exodeoxyribonuclease III 0.41 MCAODC_06055 recG ATP-dependent DNA helicase RecG low > 87
Escherichia coli ECRC98 0.27 JDDGAC_01475 xthA exodeoxyribonuclease III 0.41 JDDGAC_19170 recG ATP-dependent DNA helicase RecG low > 86
Escherichia coli ECRC99 0.27 KEDOAH_01210 xthA exodeoxyribonuclease III 0.41 KEDOAH_12600 recG ATP-dependent DNA helicase RecG — —
Klebsiella michiganensis M5al 0.27 BWI76_RS11665 exodeoxyribonuclease III 0.40 BWI76_RS27440 DNA helicase RecG low > 92
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_01983 Exodeoxyribonuclease III 0.41 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 0.33 50
Escherichia coli ECRC62 0.27 BNILDI_16200 xthA exodeoxyribonuclease III 0.41 BNILDI_04090 recG ATP-dependent DNA helicase RecG low > 75
Escherichia coli ECOR27 0.27 NOLOHH_17415 xthA exodeoxyribonuclease III 0.41 NOLOHH_07425 recG ATP-dependent DNA helicase RecG low > 75
Enterobacter asburiae PDN3 0.27 EX28DRAFT_1753 exodeoxyribonuclease III 0.41 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 76
Escherichia coli ECOR38 0.27 HEPCGN_05265 xthA exodeoxyribonuclease III 0.41 HEPCGN_14365 recG ATP-dependent DNA helicase RecG low > 87
Pectobacterium carotovorum WPP14 0.27 HER17_RS11085 exodeoxyribonuclease III 0.42 HER17_RS21395 ATP-dependent DNA helicase RecG 0.72 22
Rahnella sp. WP5 0.26 EX31_RS06330 exodeoxyribonuclease III 0.41 EX31_RS15820 ATP-dependent DNA helicase RecG low > 89
Pantoea sp. MT58 0.26 IAI47_08990 exodeoxyribonuclease III 0.43 IAI47_00500 ATP-dependent DNA helicase RecG low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF3490 Exodeoxyribonuclease III (EC 3.1.11.2) 0.41 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 78
Dickeya dadantii 3937 0.26 DDA3937_RS10310 exodeoxyribonuclease III 0.42 DDA3937_RS00170 ATP-dependent DNA helicase RecG low > 74
Dickeya dianthicola ME23 0.26 DZA65_RS10795 exodeoxyribonuclease III 0.43 DZA65_RS22160 ATP-dependent DNA helicase RecG low > 75
Serratia liquefaciens MT49 0.26 IAI46_14290 exodeoxyribonuclease III 0.41 IAI46_24905 ATP-dependent DNA helicase RecG low > 86
Erwinia tracheiphila SCR3 0.26 LU632_RS12950 xthA exodeoxyribonuclease III 0.41 LU632_RS22190 recG ATP-dependent DNA helicase RecG low > 74
Dickeya dianthicola 67-19 0.26 HGI48_RS10320 exodeoxyribonuclease III 0.42 HGI48_RS21190 ATP-dependent DNA helicase RecG low > 71
Shewanella oneidensis MR-1 0.25 SO3037 xth exodeoxyribonuclease III (NCBI ptt file) 0.43 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.26 31
Shewanella sp. ANA-3 0.25 Shewana3_1503 exonuclease III (RefSeq) 0.43 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.45 24
Pseudomonas syringae pv. syringae B728a 0.25 Psyr_2476 Exodeoxyribonuclease III 0.42 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.25 Psyr_2476 Exodeoxyribonuclease III 0.42 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Kangiella aquimarina DSM 16071 0.24 B158DRAFT_1291 exodeoxyribonuclease III 0.40 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.47 31
Pseudomonas fluorescens FW300-N2E3 0.24 AO353_27875 exonuclease III 0.43 AO353_09320 ATP-dependent DNA helicase RecG low > 101
Pseudomonas simiae WCS417 0.24 PS417_16980 exonuclease III 0.43 PS417_27870 ATP-dependent DNA helicase RecG low > 88
Shewanella loihica PV-4 0.24 Shew_2262 exonuclease III (RefSeq) 0.43 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) — —
Marinobacter adhaerens HP15 0.24 HP15_1776 exonuclease III 0.42 HP15_309 DNA helicase, ATP-dependent, RecG low > 73
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS18930 exodeoxyribonuclease III 0.43 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas fluorescens SBW25 0.24 PFLU_RS18930 exodeoxyribonuclease III 0.43 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Alteromonas macleodii MIT1002 0.22 MIT1002_01652 Exodeoxyribonuclease III 0.43 MIT1002_00111 ATP-dependent DNA helicase RecG low > 70
Shewanella amazonensis SB2B 0.21 Sama_2139 exodeoxyribonuclease III (RefSeq) 0.42 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) low > 62

Not shown: 0 genomes with orthologs for RR42_RS07325 only; 9 genomes with orthologs for RR42_RS17390 only