Conservation of cofitness between RR42_RS07325 and RR42_RS15050 in Cupriavidus basilensis FW507-4G11

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS07325 exodeoxyribonuclease III 1.0 RR42_RS15050 DNA polymerase I 0.88 1
Ralstonia sp. UNC404CL21Col 0.74 ABZR87_RS13495 exodeoxyribonuclease III 0.78 ABZR87_RS15680 DNA polymerase I 0.70 1
Ralstonia solanacearum GMI1000 0.74 RS_RS08025 exodeoxyribonuclease III 0.78 RS_RS11195 DNA polymerase I low > 80
Ralstonia solanacearum IBSBF1503 0.74 RALBFv3_RS01700 exodeoxyribonuclease III 0.78 RALBFv3_RS03750 DNA polymerase I low > 76
Ralstonia solanacearum UW163 0.74 UW163_RS15010 exodeoxyribonuclease III 0.78 UW163_RS09920 DNA polymerase I — —
Ralstonia solanacearum PSI07 0.73 RPSI07_RS15785 exodeoxyribonuclease III 0.78 RPSI07_RS13480 DNA polymerase I low > 81
Paraburkholderia graminis OAS925 0.67 ABIE53_002802 exodeoxyribonuclease-3 0.65 ABIE53_004852 DNA polymerase-1 0.20 1
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS12925 exodeoxyribonuclease III 0.65 BPHYT_RS33610 DNA polymerase I low > 109
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_00456 Exodeoxyribonuclease III 0.64 H281DRAFT_06022 DNA polymerase I low > 103
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS05680 exodeoxyribonuclease III 0.66 QEN71_RS17885 DNA polymerase I — —
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS15630 exodeoxyribonuclease III 0.71 HSERO_RS02260 DNA polymerase I 0.60 6
Castellaniella sp019104865 MT123 0.59 ABCV34_RS03115 exodeoxyribonuclease III 0.57 ABCV34_RS02195 DNA polymerase I low > 48
Acidovorax sp. GW101-3H11 0.57 Ac3H11_4433 Exodeoxyribonuclease III (EC 3.1.11.2) 0.57 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Variovorax sp. SCN45 0.57 GFF3064 Exodeoxyribonuclease III (EC 3.1.11.2) 0.59 GFF4006 DNA polymerase I (EC 2.7.7.7) 0.58 72
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF5268 Exodeoxyribonuclease III (EC 3.1.11.2) 0.57 GFF5584 DNA polymerase I (EC 2.7.7.7) 0.81 2
Variovorax sp. OAS795 0.56 ABID97_RS09955 exodeoxyribonuclease III 0.59 ABID97_RS09180 DNA polymerase I 0.60 17
Dyella japonica UNC79MFTsu3.2 0.56 ABZR86_RS14930 exodeoxyribonuclease III 0.52 ABZR86_RS17015 DNA polymerase I 0.79 1
Dechlorosoma suillum PS 0.55 Dsui_0044 exodeoxyribonuclease III 0.60 Dsui_0459 DNA polymerase I 0.34 39
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_15390 xth exodeoxyribonuclease III 0.51 OKGIIK_16785 polA DNA polymerase I low > 52
Rhodanobacter denitrificans MT42 0.51 LRK55_RS08390 exodeoxyribonuclease III 0.51 LRK55_RS06585 DNA polymerase I low > 63
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS08625 exodeoxyribonuclease III 0.51 LRK54_RS06840 DNA polymerase I 0.83 1
Lysobacter sp. OAE881 0.50 ABIE51_RS01755 exodeoxyribonuclease III 0.50 ABIE51_RS02010 DNA polymerase I low > 62
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.5140.1 Exodeoxyribonuclease III (EC 3.1.11.2) 0.49 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Synechococcus elongatus PCC 7942 0.44 Synpcc7942_2607 xthA Exodeoxyribonuclease III 0.29 Synpcc7942_0194 polA DNA polymerase I — —
Magnetospirillum magneticum AMB-1 0.39 AMB_RS12755 exodeoxyribonuclease III 0.38 AMB_RS21305 DNA polymerase I — —
Agrobacterium fabrum C58 0.39 Atu5048 exodeoxyribonuclease III 0.38 Atu0110 DNA polymerase I — —
Rhizobium sp. OAE497 0.38 ABIE40_RS08420 exodeoxyribonuclease III 0.38 ABIE40_RS00490 DNA polymerase I 0.55 91
Bosea sp. OAE506 0.38 ABIE41_RS15705 exodeoxyribonuclease III 0.35 ABIE41_RS03570 DNA polymerase I 0.86 1
Azospirillum brasilense Sp245 0.38 AZOBR_RS15540 exodeoxyribonuclease III 0.37 AZOBR_RS30685 DNA polymerase 0.93 1
Azospirillum sp. SherDot2 0.37 MPMX19_04331 Exodeoxyribonuclease 0.37 MPMX19_04869 DNA polymerase I low > 112
Rhodopseudomonas palustris CGA009 0.36 TX73_014820 exodeoxyribonuclease III 0.36 TX73_024545 DNA polymerase I 0.33 8
Sinorhizobium meliloti 1021 0.36 SMc02077 exodeoxyribonuclease III protein 0.38 SMc02850 DNA polymerase I 0.64 1
Pedobacter sp. GW460-11-11-14-LB5 0.35 CA265_RS16670 exodeoxyribonuclease III 0.34 CA265_RS19630 DNA polymerase I low > 88
Brevundimonas sp. GW460-12-10-14-LB2 0.35 A4249_RS02655 exodeoxyribonuclease III 0.40 A4249_RS13840 DNA polymerase I — —
Rhodospirillum rubrum S1H 0.35 Rru_A1784 exodeoxyribonuclease III xth (NCBI) 0.37 Rru_A3514 DNA polymerase A (NCBI) — —
Caulobacter crescentus NA1000 0.35 CCNA_02090 exodeoxyribonuclease III 0.39 CCNA_03577 DNA polymerase I 0.68 1
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_02090 exodeoxyribonuclease III 0.39 CCNA_03577 DNA polymerase I — —
Pseudomonas sp. RS175 0.34 PFR28_01207 Exodeoxyribonuclease III 0.49 PFR28_04624 DNA polymerase I low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.34 ABZR88_RS19760 exodeoxyribonuclease III 0.35 ABZR88_RS20185 DNA polymerase I low > 71
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_2237 Exodeoxyribonuclease III (EC 3.1.11.2) 0.49 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) low > 103
Pseudomonas stutzeri RCH2 0.34 Psest_1187 exodeoxyribonuclease III 0.49 Psest_4219 DNA polymerase I low > 67
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_01850 exodeoxyribonuclease III 0.49 AO356_11465 DNA polymerase I low > 104
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_38 Exodeoxyribonuclease III (EC 3.1.11.2) 0.48 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_3967 Exodeoxyribonuclease III (EC 3.1.11.2) 0.48 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_3499 exodeoxyribonuclease III 0.36 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) 0.53 1
Pseudomonas putida KT2440 0.32 PP_2707 putative Exodeoxyribonuclease III 0.50 PP_0123 DNA polymerase I, 5 low > 96
Pseudomonas sp. S08-1 0.32 OH686_23775 exodeoxyribonuclease III 0.51 OH686_12215 DNA polymerase I low > 80
Dinoroseobacter shibae DFL-12 0.32 Dshi_1886 exodeoxyribonuclease III Xth (RefSeq) 0.37 Dshi_2909 DNA polymerase I (RefSeq) 0.41 1
Phaeobacter inhibens DSM 17395 0.31 PGA1_c11070 exodeoxyribonuclease III 0.39 PGA1_c31780 DNA polymerase I 0.52 1
Mycobacterium tuberculosis H37Rv 0.30 Rv0427c Probable exodeoxyribonuclease III protein XthA (exonuclease III) (EXO III) (AP endonuclease VI) 0.18 Rv1629 Probable DNA polymerase I PolA — —
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_09315 exodeoxyribonuclease III 0.52 CSW01_00560 DNA polymerase I low > 62
Enterobacter sp. TBS_079 0.28 MPMX20_01864 Exodeoxyribonuclease III 0.49 MPMX20_04601 DNA polymerase I low > 85
Escherichia coli Nissle 1917 0.28 ECOLIN_RS09750 exodeoxyribonuclease III 0.49 ECOLIN_RS22270 DNA polymerase I — —
Escherichia fergusonii Becca 0.28 EFB2_02244 Exodeoxyribonuclease III 0.49 EFB2_04753 DNA polymerase I — —
Escherichia coli ECRC102 0.27 NIAGMN_01165 xthA exodeoxyribonuclease III 0.50 NIAGMN_11905 polA DNA polymerase I — —
Escherichia coli BW25113 0.27 b1749 xthA exonuclease III (NCBI) 0.50 b3863 polA DNA polymerase I (NCBI) 0.18 37
Escherichia coli ECRC62 0.27 BNILDI_16200 xthA exodeoxyribonuclease III 0.50 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_01983 Exodeoxyribonuclease III 0.49 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli ECRC100 0.27 OKFHMN_26900 xthA exodeoxyribonuclease III 0.50 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECRC99 0.27 KEDOAH_01210 xthA exodeoxyribonuclease III 0.50 KEDOAH_14000 polA DNA polymerase I — —
Klebsiella michiganensis M5al 0.27 BWI76_RS11665 exodeoxyribonuclease III 0.48 BWI76_RS00355 DNA polymerase I low > 92
Escherichia coli ECOR27 0.27 NOLOHH_17415 xthA exodeoxyribonuclease III 0.50 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli ECRC98 0.27 JDDGAC_01475 xthA exodeoxyribonuclease III 0.50 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli BL21 0.27 ECD_01718 exonuclease III 0.50 ECD_03749 5 — —
Escherichia coli ECRC101 0.27 MCAODC_18510 xthA exodeoxyribonuclease III 0.50 MCAODC_04650 polA DNA polymerase I — —
Enterobacter asburiae PDN3 0.27 EX28DRAFT_1753 exodeoxyribonuclease III 0.49 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Escherichia coli ECOR38 0.27 HEPCGN_05265 xthA exodeoxyribonuclease III 0.49 HEPCGN_12785 polA DNA polymerase I — —
Pectobacterium carotovorum WPP14 0.27 HER17_RS11085 exodeoxyribonuclease III 0.49 HER17_RS21470 DNA polymerase I — —
Pantoea sp. MT58 0.26 IAI47_08990 exodeoxyribonuclease III 0.49 IAI47_00430 DNA polymerase I low > 76
Rahnella sp. WP5 0.26 EX31_RS06330 exodeoxyribonuclease III 0.48 EX31_RS15905 DNA polymerase I low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF3490 Exodeoxyribonuclease III (EC 3.1.11.2) 0.49 GFF2216 DNA polymerase I (EC 2.7.7.7) 0.77 5
Erwinia tracheiphila SCR3 0.26 LU632_RS12950 xthA exodeoxyribonuclease III 0.49 LU632_RS23870 polA DNA polymerase I — —
Dickeya dadantii 3937 0.26 DDA3937_RS10310 exodeoxyribonuclease III 0.50 DDA3937_RS00105 DNA polymerase I — —
Dickeya dianthicola ME23 0.26 DZA65_RS10795 exodeoxyribonuclease III 0.49 DZA65_RS22235 DNA polymerase I — —
Serratia liquefaciens MT49 0.26 IAI46_14290 exodeoxyribonuclease III 0.50 IAI46_24985 DNA polymerase I low > 86
Dickeya dianthicola 67-19 0.26 HGI48_RS10320 exodeoxyribonuclease III 0.50 HGI48_RS21260 DNA polymerase I — —
Shewanella oneidensis MR-1 0.25 SO3037 xth exodeoxyribonuclease III (NCBI ptt file) 0.50 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Shewanella sp. ANA-3 0.25 Shewana3_1503 exonuclease III (RefSeq) 0.51 Shewana3_4109 DNA polymerase I (RefSeq) — —
Pseudomonas syringae pv. syringae B728a 0.25 Psyr_2476 Exodeoxyribonuclease III 0.47 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.25 Psyr_2476 Exodeoxyribonuclease III 0.47 Psyr_0270 DNA polymerase I low > 86
Pseudomonas simiae WCS417 0.24 PS417_16980 exonuclease III 0.49 PS417_00405 DNA polymerase I low > 88
Pseudomonas fluorescens FW300-N2E3 0.24 AO353_27875 exonuclease III 0.49 AO353_10930 DNA polymerase I 0.27 18
Kangiella aquimarina DSM 16071 0.24 B158DRAFT_1291 exodeoxyribonuclease III 0.52 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) 0.86 1
Marinobacter adhaerens HP15 0.24 HP15_1776 exonuclease III 0.48 HP15_293 DNA polymerase I low > 73
Shewanella loihica PV-4 0.24 Shew_2262 exonuclease III (RefSeq) 0.49 Shew_3714 DNA polymerase I (RefSeq) — —
Pseudomonas fluorescens SBW25 0.24 PFLU_RS18930 exodeoxyribonuclease III 0.49 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS18930 exodeoxyribonuclease III 0.49 PFLU_RS00395 DNA polymerase I 0.13 19
Alteromonas macleodii MIT1002 0.22 MIT1002_01652 Exodeoxyribonuclease III 0.50 MIT1002_00014 DNA polymerase I low > 70
Shewanella amazonensis SB2B 0.21 Sama_2139 exodeoxyribonuclease III (RefSeq) 0.50 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62

Not shown: 0 genomes with orthologs for RR42_RS07325 only; 10 genomes with orthologs for RR42_RS15050 only