Conservation of cofitness between RR42_RS07325 and RR42_RS02785 in Cupriavidus basilensis FW507-4G11

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS07325 exodeoxyribonuclease III 1.0 RR42_RS02785 dimethyladenosine transferase 0.57 18
Ralstonia sp. UNC404CL21Col 0.74 ABZR87_RS13495 exodeoxyribonuclease III 0.74 ABZR87_RS07710 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.49 50
Ralstonia solanacearum GMI1000 0.74 RS_RS08025 exodeoxyribonuclease III 0.73 RS_RS02580 ribosomal RNA small subunit methyltransferase A low > 80
Ralstonia solanacearum IBSBF1503 0.74 RALBFv3_RS01700 exodeoxyribonuclease III 0.73 RALBFv3_RS11755 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 76
Ralstonia solanacearum UW163 0.74 UW163_RS15010 exodeoxyribonuclease III 0.73 UW163_RS01830 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA — —
Ralstonia solanacearum PSI07 0.73 RPSI07_RS15785 exodeoxyribonuclease III 0.72 RPSI07_RS21460 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 81
Paraburkholderia graminis OAS925 0.67 ABIE53_002802 exodeoxyribonuclease-3 0.62 ABIE53_000800 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase low > 113
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS12925 exodeoxyribonuclease III 0.62 BPHYT_RS03305 ribosomal RNA small subunit methyltransferase A — —
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_00456 Exodeoxyribonuclease III 0.61 H281DRAFT_04640 dimethyladenosine transferase low > 103
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS05680 exodeoxyribonuclease III 0.63 QEN71_RS02130 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 153
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS15630 exodeoxyribonuclease III 0.53 HSERO_RS03540 dimethyladenosine transferase 0.44 36
Castellaniella sp019104865 MT123 0.59 ABCV34_RS03115 exodeoxyribonuclease III 0.47 ABCV34_RS09490 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA — —
Acidovorax sp. GW101-3H11 0.57 Ac3H11_4433 Exodeoxyribonuclease III (EC 3.1.11.2) 0.48 Ac3H11_4327 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) — —
Variovorax sp. SCN45 0.57 GFF3064 Exodeoxyribonuclease III (EC 3.1.11.2) 0.50 GFF3251 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF5268 Exodeoxyribonuclease III (EC 3.1.11.2) 0.47 GFF2466 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) low > 90
Variovorax sp. OAS795 0.56 ABID97_RS09955 exodeoxyribonuclease III 0.49 ABID97_RS02525 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 91
Dyella japonica UNC79MFTsu3.2 0.56 ABZR86_RS14930 exodeoxyribonuclease III 0.37 ABZR86_RS11270 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 74
Dechlorosoma suillum PS 0.55 Dsui_0044 exodeoxyribonuclease III 0.52 Dsui_0039 dimethyladenosine transferase low > 51
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_15390 xth exodeoxyribonuclease III 0.36 OKGIIK_11625 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA low > 52
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS08625 exodeoxyribonuclease III 0.39 LRK54_RS12305 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 59
Rhodanobacter denitrificans MT42 0.51 LRK55_RS08390 exodeoxyribonuclease III 0.39 LRK55_RS12040 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 63
Lysobacter sp. OAE881 0.50 ABIE51_RS01755 exodeoxyribonuclease III 0.42 ABIE51_RS05385 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 62
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.5140.1 Exodeoxyribonuclease III (EC 3.1.11.2) 0.39 Xcc-8004.4271.1 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) low > 74
Synechococcus elongatus PCC 7942 0.44 Synpcc7942_2607 xthA Exodeoxyribonuclease III 0.24 Synpcc7942_0311 ksgA dimethyladenosine transferase low > 38
Magnetospirillum magneticum AMB-1 0.39 AMB_RS12755 exodeoxyribonuclease III 0.27 AMB_RS18820 dimethyladenosine transferase — —
Agrobacterium fabrum C58 0.39 Atu5048 exodeoxyribonuclease III 0.30 Atu1103 rRNA-adenine N6,N6-dimethyltransferase low > 89
Rhizobium sp. OAE497 0.38 ABIE40_RS08420 exodeoxyribonuclease III 0.25 ABIE40_RS06390 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 107
Bosea sp. OAE506 0.38 ABIE41_RS15705 exodeoxyribonuclease III 0.28 ABIE41_RS17730 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 77
Azospirillum brasilense Sp245 0.38 AZOBR_RS15540 exodeoxyribonuclease III 0.29 AZOBR_RS16340 16S rRNA methyltransferase low > 97
Azospirillum sp. SherDot2 0.37 MPMX19_04331 Exodeoxyribonuclease 0.27 MPMX19_01514 Ribosomal RNA small subunit methyltransferase A — —
Rhodopseudomonas palustris CGA009 0.36 TX73_014820 exodeoxyribonuclease III 0.27 TX73_015860 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 86
Sinorhizobium meliloti 1021 0.36 SMc02077 exodeoxyribonuclease III protein 0.25 SMc00579 dimethyladenosine transferase low > 103
Pedobacter sp. GW460-11-11-14-LB5 0.35 CA265_RS16670 exodeoxyribonuclease III 0.28 CA265_RS18315 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase low > 88
Brevundimonas sp. GW460-12-10-14-LB2 0.35 A4249_RS02655 exodeoxyribonuclease III 0.26 A4249_RS06760 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA — —
Caulobacter crescentus NA1000 0.35 CCNA_02090 exodeoxyribonuclease III 0.28 CCNA_01757 dimethyladenosine transferase low > 66
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_02090 exodeoxyribonuclease III 0.28 CCNA_01757 dimethyladenosine transferase — —
Rhodospirillum rubrum S1H 0.35 Rru_A1784 exodeoxyribonuclease III xth (NCBI) 0.27 Rru_A0431 16S rRNA dimethylase (NCBI) — —
Pseudomonas sp. RS175 0.34 PFR28_01207 Exodeoxyribonuclease III 0.45 PFR28_04064 Ribosomal RNA small subunit methyltransferase A low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.34 ABZR88_RS19760 exodeoxyribonuclease III 0.29 ABZR88_RS00050 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 71
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_2237 Exodeoxyribonuclease III (EC 3.1.11.2) 0.45 Pf6N2E2_4805 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) — —
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_01850 exodeoxyribonuclease III 0.45 AO356_14335 rRNA methyltransferase low > 104
Pseudomonas stutzeri RCH2 0.34 Psest_1187 exodeoxyribonuclease III 0.43 Psest_3668 dimethyladenosine transferase — —
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_38 Exodeoxyribonuclease III (EC 3.1.11.2) 0.45 Pf1N1B4_2528 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) — —
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_3967 Exodeoxyribonuclease III (EC 3.1.11.2) 0.45 PfGW456L13_1200 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) — —
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_3499 exodeoxyribonuclease III 0.27 Ga0059261_0879 ribosomal RNA small subunit methyltransferase A low > 68
Pseudomonas putida KT2440 0.32 PP_2707 putative Exodeoxyribonuclease III 0.46 PP_0401 Ribosomal RNA small subunit methyltransferase A low > 96
Pseudomonas sp. S08-1 0.32 OH686_23775 exodeoxyribonuclease III 0.45 OH686_15040 ribosomal RNA small subunit methyltransferase A low > 80
Dinoroseobacter shibae DFL-12 0.32 Dshi_1886 exodeoxyribonuclease III Xth (RefSeq) 0.27 Dshi_1185 dimethyladenosine transferase (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.31 PGA1_c11070 exodeoxyribonuclease III 0.26 PGA1_c19860 dimethyladenosine transferase KsgA low > 62
Mycobacterium tuberculosis H37Rv 0.30 Rv0427c Probable exodeoxyribonuclease III protein XthA (exonuclease III) (EXO III) (AP endonuclease VI) 0.23 Rv1010 Probable dimethyladenosine transferase KsgA (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (high level kasugamycin resistance protein KsgA) (kasugamycin dimethyltransferase) low > 58
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_09315 exodeoxyribonuclease III 0.49 CSW01_02325 ribosomal RNA small subunit methyltransferase A — —
Enterobacter sp. TBS_079 0.28 MPMX20_01864 Exodeoxyribonuclease III 0.50 MPMX20_00747 Ribosomal RNA small subunit methyltransferase A low > 85
Escherichia coli Nissle 1917 0.28 ECOLIN_RS09750 exodeoxyribonuclease III 0.51 ECOLIN_RS00285 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA — —
Escherichia fergusonii Becca 0.28 EFB2_02244 Exodeoxyribonuclease III 0.51 EFB2_03992 Ribosomal RNA small subunit methyltransferase A low > 86
Escherichia coli BW25113 0.27 b1749 xthA exonuclease III (NCBI) 0.51 b0051 ksgA dimethyladenosine transferase (NCBI) low > 76
Klebsiella michiganensis M5al 0.27 BWI76_RS11665 exodeoxyribonuclease III 0.51 BWI76_RS04520 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase — —
Escherichia coli ECRC99 0.27 KEDOAH_01210 xthA exodeoxyribonuclease III 0.51 KEDOAH_17320 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA — —
Escherichia coli ECRC100 0.27 OKFHMN_26900 xthA exodeoxyribonuclease III 0.51 OKFHMN_10835 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA — —
Escherichia coli ECRC62 0.27 BNILDI_16200 xthA exodeoxyribonuclease III 0.51 BNILDI_08425 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA low > 75
Escherichia coli ECRC98 0.27 JDDGAC_01475 xthA exodeoxyribonuclease III 0.51 JDDGAC_14430 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA low > 86
Escherichia coli BL21 0.27 ECD_01718 exonuclease III 0.51 ECD_00055 16S rRNA m(6)A1518, m(6)A1519 dimethyltransferase, SAM-dependent — —
Escherichia coli ECRC102 0.27 NIAGMN_01165 xthA exodeoxyribonuclease III 0.51 NIAGMN_08685 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA — —
Escherichia coli ECRC101 0.27 MCAODC_18510 xthA exodeoxyribonuclease III 0.51 MCAODC_01350 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA low > 87
Escherichia coli ECOR27 0.27 NOLOHH_17415 xthA exodeoxyribonuclease III 0.51 NOLOHH_03180 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_01983 Exodeoxyribonuclease III 0.51 OHPLBJKB_03605 Ribosomal RNA small subunit methyltransferase A low > 73
Enterobacter asburiae PDN3 0.27 EX28DRAFT_1753 exodeoxyribonuclease III 0.51 EX28DRAFT_3645 ribosomal RNA small subunit methyltransferase A low > 76
Escherichia coli ECOR38 0.27 HEPCGN_05265 xthA exodeoxyribonuclease III 0.51 HEPCGN_08825 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA low > 87
Pectobacterium carotovorum WPP14 0.27 HER17_RS11085 exodeoxyribonuclease III 0.49 HER17_RS02960 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 75
Rahnella sp. WP5 0.26 EX31_RS06330 exodeoxyribonuclease III 0.48 EX31_RS03780 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA — —
Pantoea sp. MT58 0.26 IAI47_08990 exodeoxyribonuclease III 0.50 IAI47_16085 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF3490 Exodeoxyribonuclease III (EC 3.1.11.2) 0.50 GFF190 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) low > 78
Erwinia tracheiphila SCR3 0.26 LU632_RS12950 xthA exodeoxyribonuclease III 0.49 LU632_RS02730 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 74
Serratia liquefaciens MT49 0.26 IAI46_14290 exodeoxyribonuclease III 0.48 IAI46_03245 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA — —
Dickeya dadantii 3937 0.26 DDA3937_RS10310 exodeoxyribonuclease III 0.48 DDA3937_RS18265 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 74
Dickeya dianthicola ME23 0.26 DZA65_RS10795 exodeoxyribonuclease III 0.49 DZA65_RS19340 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA — —
Dickeya dianthicola 67-19 0.26 HGI48_RS10320 exodeoxyribonuclease III 0.49 HGI48_RS18200 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA — —
Shewanella oneidensis MR-1 0.25 SO3037 xth exodeoxyribonuclease III (NCBI ptt file) 0.51 SO3639 ksgA dimethyladenosine transferase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.25 Shewana3_1503 exonuclease III (RefSeq) 0.51 Shewana3_3209 ksgA dimethyladenosine transferase (RefSeq) — —
Pseudomonas syringae pv. syringae B728a 0.25 Psyr_2476 Exodeoxyribonuclease III 0.44 Psyr_4627 dimethyladenosine transferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.25 Psyr_2476 Exodeoxyribonuclease III 0.44 Psyr_4627 dimethyladenosine transferase low > 86
Pseudomonas simiae WCS417 0.24 PS417_16980 exonuclease III 0.45 PS417_25810 ribosomal RNA small subunit methyltransferase A — —
Kangiella aquimarina DSM 16071 0.24 B158DRAFT_1291 exodeoxyribonuclease III 0.47 B158DRAFT_0788 dimethyladenosine transferase low > 40
Pseudomonas fluorescens FW300-N2E3 0.24 AO353_27875 exonuclease III 0.45 AO353_07315 rRNA methyltransferase low > 101
Shewanella loihica PV-4 0.24 Shew_2262 exonuclease III (RefSeq) 0.52 Shew_0879 ksgA dimethyladenosine transferase (RefSeq) — —
Marinobacter adhaerens HP15 0.24 HP15_1776 exonuclease III 0.43 HP15_3278 dimethyladenosine transferase low > 73
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS18930 exodeoxyribonuclease III 0.45 PFLU_RS27465 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 109
Pseudomonas fluorescens SBW25 0.24 PFLU_RS18930 exodeoxyribonuclease III 0.45 PFLU_RS27465 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 109
Alteromonas macleodii MIT1002 0.22 MIT1002_01652 Exodeoxyribonuclease III 0.44 MIT1002_00781 Ribosomal RNA small subunit methyltransferase A low > 70
Shewanella amazonensis SB2B 0.21 Sama_2139 exodeoxyribonuclease III (RefSeq) 0.49 Sama_2819 ksgA dimethyladenosine transferase (RefSeq) — —

Not shown: 0 genomes with orthologs for RR42_RS07325 only; 13 genomes with orthologs for RR42_RS02785 only