Conservation of cofitness between Psyr_0025 and Psyr_4369 in Pseudomonas syringae pv. syringae B728a

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0025 shikimate dehydrogenase 1.0 Psyr_4369 glutamate-5-semialdehyde dehydrogenase 0.69 7
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0025 shikimate dehydrogenase 1.00 Psyr_4369 glutamate-5-semialdehyde dehydrogenase 0.62 25
Pseudomonas simiae WCS417 0.83 PS417_00125 shikimate dehydrogenase 0.75 PS417_24745 gamma-glutamyl phosphate reductase — —
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.86 Pf1N1B4_2688 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 87
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.85 PfGW456L13_1356 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 87
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_10670 shikimate dehydrogenase 0.88 AO353_06495 gamma-glutamyl phosphate reductase 0.58 66
Pseudomonas sp. RS175 0.81 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.87 PFR28_03872 Gamma-glutamyl phosphate reductase — —
Pseudomonas fluorescens SBW25 0.81 PFLU_RS00120 shikimate dehydrogenase 0.75 PFLU_RS26675 glutamate-5-semialdehyde dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS00120 shikimate dehydrogenase 0.75 PFLU_RS26675 glutamate-5-semialdehyde dehydrogenase — —
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_11315 shikimate dehydrogenase 0.88 AO356_15290 gamma-glutamyl phosphate reductase low > 104
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.85 Pf6N2E2_4993 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) — —
Pseudomonas putida KT2440 0.77 PP_0074 shikimate 5-dehydrogenase 0.85 PP_4811 Gamma-glutamyl phosphate reductase — —
Pseudomonas sp. S08-1 0.75 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.72 OH686_09340 Gamma-glutamyl phosphate reductase 0.80 7
Pseudomonas stutzeri RCH2 0.73 Psest_0029 shikimate 5-dehydrogenase 0.73 Psest_0508 gamma-glutamyl phosphate reductase — —
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_00280 shikimate dehydrogenase 0.39 CSW01_11570 glutamate-5-semialdehyde dehydrogenase low > 62
Dechlorosoma suillum PS 0.56 Dsui_0443 shikimate 5-dehydrogenase 0.60 Dsui_1220 gamma-glutamyl phosphate reductase — —
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS01990 shikimate 5-dehydrogenase 0.59 HSERO_RS02965 gamma-glutamyl phosphate reductase low > 78
Shewanella sp. ANA-3 0.53 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.43 Shewana3_4057 glutamate-5-semialdehyde dehydrogenase (RefSeq) low > 73
Marinobacter adhaerens HP15 0.52 HP15_3750 shikimate dehydrogenase 0.70 HP15_601 gamma-glutamyl phosphate reductase — —
Shewanella loihica PV-4 0.51 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.43 Shew_3015 gamma-glutamyl phosphate reductase (RefSeq) low > 60
Shewanella oneidensis MR-1 0.50 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.39 SO1122 proA gamma-glutamyl phosphate reductase (NCBI ptt file) 0.88 16
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.43 OHPLBJKB_03397 Gamma-glutamyl phosphate reductase low > 73
Escherichia coli BL21 0.49 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.43 ECD_00240 gamma-glutamylphosphate reductase 0.61 16
Escherichia coli Nissle 1917 0.49 ECOLIN_RS18840 shikimate dehydrogenase 0.44 ECOLIN_RS01830 glutamate-5-semialdehyde dehydrogenase 0.81 12
Escherichia coli BW25113 0.49 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.43 b0243 proA gamma-glutamyl phosphate reductase (NCBI) 0.91 31
Escherichia coli ECRC62 0.49 BNILDI_02165 aroE shikimate dehydrogenase 0.43 BNILDI_00240 proA glutamate-5-semialdehyde dehydrogenase 0.92 19
Escherichia coli ECOR27 0.49 NOLOHH_09355 aroE shikimate dehydrogenase 0.43 NOLOHH_02045 proA glutamate-5-semialdehyde dehydrogenase 0.87 33
Escherichia coli ECRC100 0.49 OKFHMN_17565 aroE shikimate dehydrogenase 0.43 OKFHMN_09670 proA glutamate-5-semialdehyde dehydrogenase 0.97 11
Escherichia coli ECRC102 0.49 NIAGMN_15325 aroE shikimate dehydrogenase 0.43 NIAGMN_07530 proA glutamate-5-semialdehyde dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS27130 shikimate dehydrogenase 0.60 QEN71_RS26940 glutamate-5-semialdehyde dehydrogenase low > 153
Escherichia coli ECRC98 0.49 JDDGAC_21185 aroE shikimate dehydrogenase 0.43 JDDGAC_13295 proA glutamate-5-semialdehyde dehydrogenase 0.85 19
Escherichia coli ECRC99 0.49 KEDOAH_10585 aroE shikimate dehydrogenase 0.43 KEDOAH_18485 proA glutamate-5-semialdehyde dehydrogenase — —
Escherichia coli ECRC101 0.49 MCAODC_08085 aroE shikimate dehydrogenase 0.43 MCAODC_00190 proA glutamate-5-semialdehyde dehydrogenase 0.78 50
Pantoea sp. MT58 0.49 IAI47_02315 shikimate dehydrogenase 0.41 IAI47_15115 glutamate-5-semialdehyde dehydrogenase — —
Paraburkholderia graminis OAS925 0.48 ABIE53_003560 shikimate dehydrogenase 0.55 ABIE53_003523 glutamate-5-semialdehyde dehydrogenase — —
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.57 H281DRAFT_06324 glutamate-5-semialdehyde dehydrogenase — —
Escherichia fergusonii Becca 0.48 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.43 EFB2_03777 Gamma-glutamyl phosphate reductase low > 86
Ralstonia solanacearum GMI1000 0.48 RS_RS13890 shikimate dehydrogenase 0.59 RS_RS13715 gamma-glutamyl-phosphate reductase — —
Burkholderia phytofirmans PsJN 0.48 BPHYT_RS16975 shikimate 5-dehydrogenase 0.57 BPHYT_RS16770 gamma-glutamyl phosphate reductase — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS05945 shikimate dehydrogenase 0.60 RALBFv3_RS05825 glutamate-5-semialdehyde dehydrogenase low > 76
Ralstonia solanacearum UW163 0.48 UW163_RS07680 shikimate dehydrogenase 0.60 UW163_RS07800 glutamate-5-semialdehyde dehydrogenase — —
Ralstonia solanacearum PSI07 0.48 RPSI07_RS11300 shikimate dehydrogenase 0.60 RPSI07_RS11475 glutamate-5-semialdehyde dehydrogenase 0.60 61
Escherichia coli ECOR38 0.47 HEPCGN_16385 aroE shikimate dehydrogenase 0.43 HEPCGN_07775 proA glutamate-5-semialdehyde dehydrogenase 0.83 19
Dickeya dianthicola ME23 0.47 DZA65_RS20315 shikimate dehydrogenase 0.42 DZA65_RS17690 glutamate-5-semialdehyde dehydrogenase — —
Klebsiella michiganensis M5al 0.47 BWI76_RS25645 shikimate dehydrogenase 0.44 BWI76_RS05835 gamma-glutamyl-phosphate reductase 0.72 53
Enterobacter sp. TBS_079 0.47 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.43 MPMX20_00928 Gamma-glutamyl phosphate reductase 0.87 28
Shewanella amazonensis SB2B 0.47 Sama_0052 shikimate dehydrogenase (RefSeq) 0.37 Sama_2515 proA gamma-glutamyl phosphate reductase (RefSeq) 0.69 49
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.43 GFF4115 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 78
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS01605 shikimate dehydrogenase 0.61 ABZR87_RS01395 glutamate-5-semialdehyde dehydrogenase low > 80
Dickeya dianthicola 67-19 0.46 HGI48_RS19190 shikimate dehydrogenase 0.40 HGI48_RS16600 glutamate-5-semialdehyde dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS17645 shikimate dehydrogenase 0.56 RR42_RS17530 gamma-glutamyl phosphate reductase low > 128
Dickeya dadantii 3937 0.46 DDA3937_RS19100 shikimate dehydrogenase 0.43 DDA3937_RS16530 glutamate-5-semialdehyde dehydrogenase — —
Pectobacterium carotovorum WPP14 0.46 HER17_RS02250 shikimate dehydrogenase 0.40 HER17_RS04705 glutamate-5-semialdehyde dehydrogenase 0.91 42
Serratia liquefaciens MT49 0.46 IAI46_23240 shikimate dehydrogenase 0.42 IAI46_04435 glutamate-5-semialdehyde dehydrogenase 0.74 1
Enterobacter asburiae PDN3 0.46 EX28DRAFT_0046 shikimate dehydrogenase 0.43 EX28DRAFT_2650 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) low > 76
Erwinia tracheiphila SCR3 0.44 LU632_RS22445 aroE shikimate dehydrogenase 0.40 LU632_RS01190 proA glutamate-5-semialdehyde dehydrogenase low > 74
Rahnella sp. WP5 0.44 EX31_RS15950 shikimate dehydrogenase 0.43 EX31_RS20975 glutamate-5-semialdehyde dehydrogenase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.55 GFF2641 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 90
Castellaniella sp019104865 MT123 0.40 ABCV34_RS11620 shikimate dehydrogenase 0.58 ABCV34_RS00845 glutamate-5-semialdehyde dehydrogenase — —
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.57 Ac3H11_704 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 79
Variovorax sp. SCN45 0.37 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.56 GFF6326 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 127
Alteromonas macleodii MIT1002 0.37 MIT1002_00029 Shikimate dehydrogenase 0.44 MIT1002_01885 Gamma-glutamyl phosphate reductase — —
Acinetobacter radioresistens SK82 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.67 MPMX26_00417 Gamma-glutamyl phosphate reductase low > 36
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.41 Xcc-8004.2327.1 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) 0.70 54
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS14985 shikimate dehydrogenase 0.44 ABZR86_RS08680 glutamate-5-semialdehyde dehydrogenase low > 74
Variovorax sp. OAS795 0.34 ABID97_RS06300 shikimate dehydrogenase 0.54 ABID97_RS04600 glutamate-5-semialdehyde dehydrogenase — —
Rhodanobacter denitrificans MT42 0.33 LRK55_RS08360 shikimate dehydrogenase 0.44 LRK55_RS02125 glutamate-5-semialdehyde dehydrogenase low > 63
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS08595 shikimate dehydrogenase 0.44 LRK54_RS02370 glutamate-5-semialdehyde dehydrogenase low > 59
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_15365 aroE shikimate dehydrogenase 0.41 OKGIIK_09415 proA glutamate-5-semialdehyde dehydrogenase low > 52
Lysobacter sp. OAE881 0.31 ABIE51_RS01815 shikimate dehydrogenase 0.44 ABIE51_RS13365 glutamate-5-semialdehyde dehydrogenase low > 62
Kangiella aquimarina DSM 16071 0.27 B158DRAFT_0259 shikimate 5-dehydrogenase 0.41 B158DRAFT_1470 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) low > 40
Dinoroseobacter shibae DFL-12 0.25 Dshi_3450 shikimate 5-dehydrogenase (RefSeq) 0.46 Dshi_1469 gamma-glutamyl phosphate reductase (RefSeq) — —
Agrobacterium fabrum C58 0.23 Atu0003 shikimate 5-dehydrogenase 0.48 Atu2779 gamma-glutamyl phosphate reductase — —
Phaeobacter inhibens DSM 17395 0.22 PGA1_c35150 shikimate dehydrogenase AroE 0.44 PGA1_c15520 gamma-glutamyl phosphate reductase ProA — —
Sinorhizobium meliloti 1021 0.22 SMc02791 shikimate 5-dehydrogenase 0.48 SMc03777 gamma-glutamyl phosphate reductase — —
Desulfovibrio vulgaris Hildenborough JW710 0.21 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.43 DVU1953 proA gamma-glutamyl phosphate reductase (TIGR) — —
Rhodopseudomonas palustris CGA009 0.21 TX73_022410 shikimate dehydrogenase 0.45 TX73_000855 glutamate-5-semialdehyde dehydrogenase — —
Azospirillum brasilense Sp245 0.20 AZOBR_RS01765 shikimate 5-dehydrogenase 0.46 AZOBR_RS04075 gamma-glutamyl phosphate reductase — —
Rhodospirillum rubrum S1H 0.19 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.49 Rru_A1238 Gamma-glutamyl phosphate reductase GPR (NCBI) — —
Desulfovibrio vulgaris Miyazaki F 0.19 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.40 DvMF_0612 proA gamma-glutamyl phosphate reductase (RefSeq) — —
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_00003 shikimate 5-dehydrogenase 0.45 CCNA_03543 gamma-glutamyl phosphate reductase low > 67
Bosea sp. OAE506 0.19 ABIE41_RS04650 shikimate dehydrogenase 0.40 ABIE41_RS07580 glutamate-5-semialdehyde dehydrogenase — —
Caulobacter crescentus NA1000 0.19 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.45 CCNA_03543 gamma-glutamyl phosphate reductase 0.82 62
Rhizobium sp. OAE497 0.19 ABIE40_RS19250 shikimate dehydrogenase 0.46 ABIE40_RS18925 glutamate-5-semialdehyde dehydrogenase — —
Azospirillum sp. SherDot2 0.18 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.48 MPMX19_01943 Gamma-glutamyl phosphate reductase — —
Magnetospirillum magneticum AMB-1 0.18 AMB_RS23010 shikimate dehydrogenase 0.50 AMB_RS20640 glutamate-5-semialdehyde dehydrogenase — —
Sphingomonas koreensis DSMZ 15582 0.16 Ga0059261_2194 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.46 Ga0059261_2506 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) 0.91 34
Brevundimonas sp. GW460-12-10-14-LB2 0.15 A4249_RS13660 shikimate dehydrogenase 0.41 A4249_RS16120 glutamate-5-semialdehyde dehydrogenase — —
Pedobacter sp. GW460-11-11-14-LB5 0.13 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.34 CA265_RS20850 glutamate-5-semialdehyde dehydrogenase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.12 ABZR88_RS20055 shikimate dehydrogenase 0.33 ABZR88_RS22165 glutamate-5-semialdehyde dehydrogenase — —

Not shown: 2 genomes with orthologs for Psyr_0025 only; 11 genomes with orthologs for Psyr_4369 only