Conservation of cofitness between Psyr_1974 and Psyr_2896 in Pseudomonas syringae pv. syringae B728a

91 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_1974 Excinuclease ABC subunit B 1.0 Psyr_2896 Excinuclease ABC subunit C 0.82 2
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_1974 Excinuclease ABC subunit B 1.00 Psyr_2896 Excinuclease ABC subunit C 0.84 2
Pseudomonas fluorescens FW300-N2E2 0.96 Pf6N2E2_52 Excinuclease ABC subunit B 0.86 Pf6N2E2_2021 Excinuclease ABC subunit C 0.81 2
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_21335 excinuclease ABC subunit B 0.89 AO356_00350 excinuclease ABC subunit C 0.93 2
Pseudomonas fluorescens SBW25 0.96 PFLU_RS20655 excinuclease ABC subunit B 0.88 PFLU_RS10770 excinuclease ABC subunit UvrC low > 109
Pseudomonas simiae WCS417 0.96 PS417_18685 excinuclease ABC subunit B 0.88 PS417_10725 excinuclease ABC subunit C 0.59 4
Pseudomonas fluorescens SBW25-INTG 0.96 PFLU_RS20655 excinuclease ABC subunit B 0.88 PFLU_RS10770 excinuclease ABC subunit UvrC 0.34 8
Pseudomonas sp. RS175 0.95 PFR28_02837 UvrABC system protein B 0.86 PFR28_01411 UvrABC system protein C low > 88
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_20545 excinuclease ABC subunit B 0.89 AO353_21835 excinuclease ABC subunit C 0.72 2
Pseudomonas fluorescens FW300-N1B4 0.95 Pf1N1B4_26 Excinuclease ABC subunit B 0.88 Pf1N1B4_5618 Excinuclease ABC subunit C 0.42 12
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_3959 Excinuclease ABC subunit B 0.89 PfGW456L13_2886 Excinuclease ABC subunit C 0.50 2
Pseudomonas putida KT2440 0.91 PP_1974 excinuclease UvrABC protein B 0.86 PP_4098 UvrABC system protein C — —
Pseudomonas stutzeri RCH2 0.90 Psest_1296 excinuclease ABC, B subunit 0.84 Psest_2259 excinuclease ABC, C subunit 0.87 2
Pseudomonas sp. S08-1 0.88 OH686_04580 excinuclease ABC subunit B 0.82 OH686_00340 excinuclease ABC subunit C low > 80
Marinobacter adhaerens HP15 0.76 HP15_1372 excinuclease ABC subunit B 0.57 HP15_1568 excinuclease ABC subunit C 0.76 13
Serratia liquefaciens MT49 0.74 IAI46_06550 excinuclease ABC subunit B 0.51 IAI46_09210 excinuclease ABC subunit UvrC 0.71 6
Pectobacterium carotovorum WPP14 0.73 HER17_RS13420 excinuclease ABC subunit B 0.50 HER17_RS07715 excinuclease ABC subunit UvrC low > 75
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_05185 excinuclease ABC subunit UvrB 0.51 CSW01_06140 excinuclease ABC subunit C 0.50 15
Kangiella aquimarina DSM 16071 0.73 B158DRAFT_2341 Excinuclease ABC subunit B 0.49 B158DRAFT_1273 Excinuclease ABC subunit C 0.92 2
Rahnella sp. WP5 0.72 EX31_RS23720 excinuclease ABC subunit B 0.50 EX31_RS24150 excinuclease ABC subunit UvrC 0.55 45
Xanthomonas campestris pv. campestris strain 8004 0.72 Xcc-8004.2034.1 Excinuclease ABC subunit B 0.45 Xcc-8004.2477.1 Excinuclease ABC subunit C 0.32 68
Dickeya dianthicola ME23 0.72 DZA65_RS08990 excinuclease ABC subunit B 0.51 DZA65_RS14285 excinuclease ABC subunit UvrC low > 75
Erwinia tracheiphila SCR3 0.72 LU632_RS09160 uvrB excinuclease ABC subunit B 0.51 LU632_RS10195 uvrC excinuclease ABC subunit UvrC low > 74
Dickeya dianthicola 67-19 0.72 HGI48_RS08695 excinuclease ABC subunit B 0.51 HGI48_RS13795 excinuclease ABC subunit UvrC low > 71
Dickeya dadantii 3937 0.72 DDA3937_RS08530 excinuclease ABC subunit B 0.51 DDA3937_RS13700 excinuclease ABC subunit UvrC low > 74
Shewanella oneidensis MR-1 0.71 SO2506 uvrB excinuclease ABC, B subunit (NCBI ptt file) 0.51 SO1861 uvrC excinuclease ABC, C subunit (NCBI ptt file) 0.71 2
Shewanella loihica PV-4 0.71 Shew_2064 excinuclease ABC subunit B (RefSeq) 0.50 Shew_1825 uvrC excinuclease ABC subunit C (RefSeq) 0.92 2
Shewanella sp. ANA-3 0.71 Shewana3_2166 excinuclease ABC subunit B (RefSeq) 0.51 Shewana3_1609 uvrC excinuclease ABC subunit C (RefSeq) low > 73
Enterobacter sp. TBS_079 0.71 MPMX20_01408 UvrABC system protein B 0.50 MPMX20_02838 UvrABC system protein C 0.56 4
Enterobacter asburiae PDN3 0.71 EX28DRAFT_2211 Excinuclease ABC subunit B 0.50 EX28DRAFT_0634 Excinuclease ABC subunit C low > 76
Pantoea sp. MT58 0.71 IAI47_13505 excinuclease ABC subunit B 0.51 IAI47_12465 excinuclease ABC subunit UvrC low > 76
Escherichia coli Nissle 1917 0.71 ECOLIN_RS04150 excinuclease ABC subunit UvrB 0.51 ECOLIN_RS10895 excinuclease ABC subunit UvrC low > 55
Klebsiella michiganensis M5al 0.71 BWI76_RS08785 excinuclease ABC subunit B 0.52 BWI76_RS18330 excinuclease ABC subunit C 0.41 2
Escherichia coli ECRC101 0.71 MCAODC_25595 uvrB excinuclease ABC subunit UvrB 0.51 MCAODC_19565 uvrC excinuclease ABC subunit UvrC 0.47 35
Escherichia coli ECRC62 0.71 BNILDI_21020 uvrB excinuclease ABC subunit UvrB 0.51 BNILDI_15235 uvrC excinuclease ABC subunit UvrC low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_02934 UvrABC system protein B 0.51 OHPLBJKB_01816 UvrABC system protein C low > 73
Escherichia coli ECRC98 0.71 JDDGAC_10015 uvrB excinuclease ABC subunit UvrB 0.51 JDDGAC_00415 uvrC excinuclease ABC subunit UvrC low > 86
Escherichia coli BW25113 0.71 b0779 uvrB excinuclease ABC subunit B (NCBI) 0.51 b1913 uvrC excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) 0.87 2
Escherichia coli ECRC102 0.71 NIAGMN_04425 uvrB excinuclease ABC subunit UvrB 0.51 NIAGMN_02225 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli BL21 0.71 ECD_00746 exision nuclease of nucleotide excision repair, DNA damage recognition component 0.51 ECD_01878 excinuclease UvrABC, endonuclease subunit 0.59 19
Escherichia coli ECOR27 0.71 NOLOHH_22750 uvrB excinuclease ABC subunit UvrB 0.51 NOLOHH_16445 uvrC excinuclease ABC subunit UvrC low > 75
Escherichia coli ECRC99 0.71 KEDOAH_21530 uvrB excinuclease ABC subunit UvrB 0.51 KEDOAH_02265 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC100 0.71 OKFHMN_06380 uvrB excinuclease ABC subunit UvrB 0.51 OKFHMN_25825 uvrC excinuclease ABC subunit UvrC low > 80
Escherichia fergusonii Becca 0.70 EFB2_03326 UvrABC system protein B 0.51 EFB2_02033 UvrABC system protein C low > 86
Escherichia coli ECOR38 0.70 HEPCGN_01660 uvrB excinuclease ABC subunit UvrB 0.51 HEPCGN_04180 uvrC excinuclease ABC subunit UvrC low > 87
Lysobacter sp. OAE881 0.70 ABIE51_RS15310 excinuclease ABC subunit UvrB 0.47 ABIE51_RS12455 excinuclease ABC subunit UvrC 0.91 4
Dyella japonica UNC79MFTsu3.2 0.70 ABZR86_RS09750 excinuclease ABC subunit UvrB 0.53 ABZR86_RS02245 excinuclease ABC subunit UvrC 0.92 3
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.70 GFF675 Excinuclease ABC subunit B 0.51 GFF1700 Excinuclease ABC subunit C low > 78
Shewanella amazonensis SB2B 0.70 Sama_1828 excinuclease ABC subunit B (RefSeq) 0.51 Sama_1608 uvrC excinuclease ABC subunit C (RefSeq) 0.72 2
Rhodanobacter denitrificans MT42 0.70 LRK55_RS13955 excinuclease ABC subunit UvrB 0.54 LRK55_RS00120 excinuclease ABC subunit UvrC 0.50 16
Rhodanobacter denitrificans FW104-10B01 0.70 LRK54_RS14235 excinuclease ABC subunit UvrB 0.54 LRK54_RS00380 excinuclease ABC subunit UvrC low > 59
Dechlorosoma suillum PS 0.69 Dsui_2434 excinuclease ABC, B subunit 0.49 Dsui_2470 excinuclease ABC, C subunit 0.73 11
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS05995 excinuclease ABC subunit B 0.43 RR42_RS14000 excinuclease ABC subunit C 0.86 2
Alteromonas macleodii MIT1002 0.69 MIT1002_01261 Excinuclease ABC subunit B 0.48 MIT1002_02153 Excinuclease ABC subunit C low > 70
Acinetobacter radioresistens SK82 0.69 MPMX26_02142 UvrABC system protein B 0.48 MPMX26_00228 UvrABC system protein C 0.74 2
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_03100 uvrB excinuclease ABC subunit UvrB 0.53 OKGIIK_06930 uvrC excinuclease ABC subunit UvrC low > 52
Ralstonia sp. UNC404CL21Col 0.69 ABZR87_RS09940 excinuclease ABC subunit UvrB 0.44 ABZR87_RS10245 excinuclease ABC subunit UvrC 0.77 2
Ralstonia solanacearum PSI07 0.68 RPSI07_RS19240 excinuclease ABC subunit UvrB 0.43 RPSI07_RS18935 excinuclease ABC subunit UvrC low > 81
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS14225 excinuclease ABC subunit UvrB 0.43 RALBFv3_RS14525 excinuclease ABC subunit UvrC 0.68 22
Ralstonia solanacearum UW163 0.68 UW163_RS11690 excinuclease ABC subunit UvrB 0.43 UW163_RS11990 excinuclease ABC subunit UvrC — —
Ralstonia solanacearum GMI1000 0.67 RS_RS05005 UvrABC system protein B 0.43 RS_RS05305 excinuclease ABC subunit UvrC 0.69 1
Castellaniella sp019104865 MT123 0.66 ABCV34_RS05110 excinuclease ABC subunit UvrB 0.42 ABCV34_RS06980 excinuclease ABC subunit UvrC low > 48
Herbaspirillum seropedicae SmR1 0.66 HSERO_RS15840 excinuclease ABC subunit B 0.45 HSERO_RS09690 excinuclease ABC subunit C 0.68 3
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4114 Excinuclease ABC subunit B 0.41 Ac3H11_373 Excinuclease ABC subunit C low > 79
Variovorax sp. OAS795 0.65 ABID97_RS13995 excinuclease ABC subunit UvrB 0.42 ABID97_RS10635 excinuclease ABC subunit UvrC 0.88 1
Hydrogenophaga sp. GW460-11-11-14-LB1 0.65 GFF4962 Excinuclease ABC subunit B 0.41 GFF3847 Excinuclease ABC subunit C — —
Variovorax sp. SCN45 0.65 GFF945 Excinuclease ABC subunit B 0.42 GFF2859 Excinuclease ABC subunit C low > 127
Azospirillum brasilense Sp245 0.62 AZOBR_RS16420 excinuclease ABC subunit B 0.36 AZOBR_RS08965 excinuclease ABC subunit C 0.47 38
Caulobacter crescentus NA1000 0.60 CCNA_03076 excinuclease ABC subunit B 0.31 CCNA_02975 excinuclease ABC subunit C 0.86 3
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_03076 excinuclease ABC subunit B 0.31 CCNA_02975 excinuclease ABC subunit C low > 67
Magnetospirillum magneticum AMB-1 0.60 AMB_RS19255 excinuclease ABC subunit UvrB 0.34 AMB_RS19240 UvrABC system protein C low > 64
Azospirillum sp. SherDot2 0.60 MPMX19_01038 UvrABC system protein B 0.35 MPMX19_01070 UvrABC system protein C low > 112
Dinoroseobacter shibae DFL-12 0.60 Dshi_2192 excinuclease ABC, B subunit (RefSeq) 0.39 Dshi_0644 excinuclease ABC, C subunit (RefSeq) 0.94 1
Brevundimonas sp. GW460-12-10-14-LB2 0.59 A4249_RS00555 excinuclease ABC subunit UvrB 0.33 A4249_RS01670 excinuclease ABC subunit UvrC low > 48
Phaeobacter inhibens DSM 17395 0.59 PGA1_c26160 uvrABC system protein B 0.38 PGA1_c02880 uvrABC system protein C 0.85 2
Rhodospirillum rubrum S1H 0.59 Rru_A1133 Excinuclease ABC, B subunit (NCBI) 0.36 Rru_A2220 Excinuclease ABC, C subunit (NCBI) low > 58
Synechococcus elongatus PCC 7942 0.59 Synpcc7942_0563 uvrB excinuclease ABC subunit B 0.25 Synpcc7942_1945 uvrC excinuclease ABC subunit C low > 38
Sphingomonas koreensis DSMZ 15582 0.58 Ga0059261_3779 Excinuclease ABC subunit B 0.37 Ga0059261_3186 Excinuclease ABC subunit C 0.84 5
Pedobacter sp. GW460-11-11-14-LB5 0.56 CA265_RS19430 excinuclease ABC subunit B 0.23 CA265_RS18110 excinuclease ABC subunit C 0.96 1
Parabacteroides merdae CL09T00C40 0.56 HMPREF1078_RS15855 excinuclease ABC subunit UvrB 0.26 HMPREF1078_RS06310 excinuclease ABC subunit UvrC low > 61
Mucilaginibacter yixingensis YX-36 DSM 26809 0.55 ABZR88_RS18110 excinuclease ABC subunit UvrB 0.23 ABZR88_RS04150 excinuclease ABC subunit UvrC low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.55 Echvi_1215 excinuclease ABC, B subunit 0.25 Echvi_0619 excinuclease ABC, C subunit 0.88 4
Fusobacterium nucleatum SB010 0.55 HUW76_02625 excinuclease ABC subunit UvrB 0.26 HUW76_06695 excinuclease ABC subunit UvrC 0.96 2
Mycobacterium tuberculosis H37Rv 0.54 Rv1633 Probable excinuclease ABC (subunit B-helicase) UvrB 0.27 Rv1420 Probable excinuclease ABC (subunit C-nuclease) UvrC low > 58
Pontibacter actiniarum KMM 6156, DSM 19842 0.54 CA264_19110 excinuclease ABC subunit B 0.24 CA264_16350 excinuclease ABC subunit C 0.57 9
Bacteroides stercoris CC31F 0.52 HMPREF1181_RS15225 excinuclease ABC subunit UvrB 0.26 HMPREF1181_RS02095 excinuclease ABC subunit UvrC low > 56
Phocaeicola dorei CL03T12C01 0.52 ABI39_RS15300 excinuclease ABC subunit UvrB 0.25 ABI39_RS05415 excinuclease ABC subunit UvrC low > 72
Phocaeicola vulgatus CL09T03C04 0.52 HMPREF1058_RS01765 excinuclease ABC subunit UvrB 0.25 HMPREF1058_RS11525 excinuclease ABC subunit UvrC 0.86 3
Bacteroides thetaiotaomicron VPI-5482 0.52 BT0570 excinuclease ABC subunit B (NCBI ptt file) 0.26 BT3266 excinuclease ABC subunit C (NCBI ptt file) 0.73 3
Bacteroides ovatus ATCC 8483 0.52 BACOVA_03714 excinuclease ABC, B subunit 0.25 BACOVA_01365 excinuclease ABC, C subunit low > 94
Methanococcus maripaludis JJ 0.51 MMJJ_RS01245 excinuclease ABC subunit UvrB 0.25 MMJJ_RS01240 excinuclease ABC subunit UvrC 0.56 7
Methanococcus maripaludis S2 0.50 MMP_RS03805 excinuclease ABC subunit UvrB 0.25 MMP_RS03810 excinuclease ABC subunit UvrC low > 25

Not shown: 7 genomes with orthologs for Psyr_1974 only; 4 genomes with orthologs for Psyr_2896 only