Conservation of cofitness between Psyr_0208 and Psyr_0704 in Pseudomonas syringae pv. syringae B728a

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0208 endoribonuclease L-PSP 1.0 Psyr_0704 glutamate 5-kinase 0.69 15
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0208 endoribonuclease L-PSP 1.00 Psyr_0704 glutamate 5-kinase low > 86
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS29515 RidA family protein 0.93 PFLU_RS25360 glutamate 5-kinase low > 109
Pseudomonas simiae WCS417 0.91 PS417_27835 endoribonuclease 0.93 PS417_23545 gamma-glutamyl kinase 0.48 75
Pseudomonas fluorescens SBW25 0.91 PFLU_RS29515 RidA family protein 0.93 PFLU_RS25360 glutamate 5-kinase low > 109
Pseudomonas lactucae CFBP13502 0.91 GEMAOFIL_00035 2-iminobutanoate/2-iminopropanoate deaminase 0.94 GEMAOFIL_04860 Glutamate 5-kinase low > 93
Pseudomonas sp. RS175 0.91 PFR28_04425 2-iminobutanoate/2-iminopropanoate deaminase 0.89 PFR28_03769 Glutamate 5-kinase — —
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_4360 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.89 Pf6N2E2_5103 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA low > 103
Pseudomonas sp. DMC3 0.91 GFF420 2-iminobutanoate/2-iminopropanoate deaminase 0.89 GFF3983 Glutamate 5-kinase — —
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_12475 reactive intermediate/imine deaminase 0.89 AO356_15815 gamma-glutamyl kinase low > 104
Pseudomonas sp. BP01 0.91 JOY50_RS08980 RidA family protein 0.85 JOY50_RS24725 proB glutamate 5-kinase low > 84
Pseudomonas sp. SVBP6 0.90 COO64_RS01560 RidA family protein 0.88 COO64_RS03090 proB glutamate 5-kinase — —
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_09285 reactive intermediate/imine deaminase 0.89 AO353_14115 gamma-glutamyl kinase 0.50 55
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_779 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.88 PfGW456L13_1472 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.66 26
Pseudomonas putida KT2440 0.89 PP_5303 aminoacrylate/iminopropionate hydrolase/deaminase 0.86 PP_0691 Glutamate 5-kinase low > 96
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_2112 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.93 Pf1N1B4_2800 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA — —
Pseudomonas segetis P6 0.86 MPMX49_00037 2-iminobutanoate/2-iminopropanoate deaminase 0.85 MPMX49_03944 Glutamate 5-kinase — —
Pseudomonas stutzeri RCH2 0.85 Psest_3818 endoribonuclease L-PSP, putative 0.78 Psest_3384 glutamate 5-kinase 0.76 24
Pseudomonas sp. S08-1 0.85 OH686_13545 RidA/YER057c/UK114 superfamily protein 0.86 OH686_16305 Glutamate 5-kinase / RNA-binding C-terminal domain PUA low > 80
Pseudomonas aeruginosa PA14 0.82 IKLFDK_26760 reactive intermediate/imine deaminase 0.87 IKLFDK_00700 Glutamate 5-kinase low > 100
Dechlorosoma suillum PS 0.78 Dsui_0312 endoribonuclease L-PSP, putative 0.62 Dsui_0166 glutamate 5-kinase — —
Shewanella amazonensis SB2B 0.73 Sama_0263 YjgF-like protein (RefSeq) 0.40 Sama_2516 gamma-glutamyl kinase (RefSeq) 0.66 46
Shewanella oneidensis MR-1 0.70 SO0358 endoribonuclease L-PSP, putative (NCBI ptt file) 0.37 SO1121 proB glutamate 5-kinase (NCBI ptt file) low > 76
Acinetobacter baumannii LAC-4 0.70 RR41_RS01650 RidA family protein 0.51 RR41_RS04980 glutamate 5-kinase low > 55
Shewanella sp. ANA-3 0.70 Shewana3_3813 putative endoribonuclease L-PSP (RefSeq) 0.37 Shewana3_0954 gamma-glutamyl kinase (RefSeq) low > 73
Acinetobacter radioresistens SK82 0.68 MPMX26_02797 2-iminobutanoate/2-iminopropanoate deaminase 0.52 MPMX26_02135 Glutamate 5-kinase 0.83 4
Alteromonas macleodii MIT1002 0.68 MIT1002_00109 Putative reactive intermediate deaminase TdcF 0.31 MIT1002_04056 Glutamate 5-kinase low > 70
Marinobacter adhaerens HP15 0.68 HP15_306 YjgF-like protein 0.62 HP15_508 gamma-glutamyl kinase — —
Dyella japonica UNC79MFTsu3.2 0.67 ABZR86_RS11845 RidA family protein 0.32 ABZR86_RS08685 glutamate 5-kinase 0.87 1
Shewanella loihica PV-4 0.67 Shew_3500 putative endoribonuclease L-PSP (RefSeq) 0.40 Shew_2848 gamma-glutamyl kinase (RefSeq) 0.73 41
Lysobacter sp. OAE881 0.66 ABIE51_RS17260 RidA family protein 0.30 ABIE51_RS13370 glutamate 5-kinase 0.82 60
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_12095 ridA reactive intermediate/imine deaminase 0.34 OKGIIK_09420 proB glutamate 5-kinase low > 53
Rhodanobacter denitrificans MT42 0.63 LRK55_RS11525 RidA family protein 0.36 LRK55_RS02130 glutamate 5-kinase low > 63
Rhodanobacter denitrificans FW104-10B01 0.63 LRK54_RS11800 RidA family protein 0.36 LRK54_RS02375 glutamate 5-kinase 0.59 35
Rhodanobacter sp000427505 FW510-R12 0.63 LRK53_RS16740 RidA family protein 0.32 LRK53_RS07570 glutamate 5-kinase 0.71 36
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.1205.1 hypothetical protein 0.31 Xcc-8004.2326.1 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.61 62
Castellaniella sp019104865 MT123 0.54 ABCV34_RS03565 Rid family detoxifying hydrolase 0.58 ABCV34_RS10800 glutamate 5-kinase — —
Desulfovibrio vulgaris Hildenborough JW710 0.49 DVU2647 endoribonuclease, L-PSP family (TIGR) 0.37 DVU0930 proB glutamate 5-kinase (TIGR) low > 55
Phocaeicola vulgatus CL09T03C04 0.49 HMPREF1058_RS18400 RidA family protein 0.27 HMPREF1058_RS08650 glutamate 5-kinase 0.51 29
Bacteroides stercoris CC31F 0.48 HMPREF1181_RS10885 RidA family protein 0.27 HMPREF1181_RS03325 glutamate 5-kinase low > 56
Phocaeicola dorei CL03T12C01 0.48 ABI39_RS14715 RidA family protein 0.25 ABI39_RS02880 glutamate 5-kinase low > 72
Bacteroides thetaiotaomicron VPI-5482 0.48 BT1336 putative translation initiation inhibitor (NCBI ptt file) 0.25 BT3719 glutamate 5-kinase (EC 2.7.2.11) (from data) 0.70 17
Bacteroides ovatus ATCC 8483 0.48 BACOVA_00589 putative endoribonuclease L-PSP 0.26 BACOVA_03537 glutamate 5-kinase 0.67 11
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS41190 RidA family protein 0.60 QEN71_RS27270 glutamate 5-kinase — —
Synechococcus elongatus PCC 7942 0.46 Synpcc7942_0972 YjgF-like protein 0.39 Synpcc7942_2197 proB gamma-glutamyl kinase — —
Pedobacter sp. GW460-11-11-14-LB5 0.46 CA265_RS22825 reactive intermediate/imine deaminase 0.27 CA265_RS20855 glutamate 5-kinase (EC 2.7.2.11) (from data) 0.88 7
Parabacteroides merdae CL09T00C40 0.45 HMPREF1078_RS02020 RidA family protein 0.26 HMPREF1078_RS10650 glutamate 5-kinase low > 61
Azospirillum brasilense Sp245 0.45 AZOBR_RS32435 dfrA 0.39 AZOBR_RS04095 glutamate 5-kinase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.44 Echvi_1327 endoribonuclease L-PSP, putative 0.29 Echvi_4033 glutamate 5-kinase (EC 2.7.2.11) (from data) low > 79
Rahnella sp. WP5 0.44 EX31_RS12775 2-iminobutanoate/2-iminopropanoate deaminase 0.39 EX31_RS20980 glutamate 5-kinase low > 89
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS17245 RidA family protein 0.27 ABZR88_RS22170 glutamate 5-kinase — —
Pantoea sp. MT58 0.44 IAI47_16870 2-iminobutanoate/2-iminopropanoate deaminase 0.40 IAI47_15120 glutamate 5-kinase 0.84 31
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF928 Endoribonuclease L-PSP 0.39 GFF4114 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA low > 78
Klebsiella michiganensis M5al 0.43 BWI76_RS02985 reactive intermediate/imine deaminase 0.39 BWI76_RS05840 glutamate 5-kinase 0.42 20
Pantoea agglomerans CFBP13505 P0401 0.43 PagCFBP13505_RS08965 2-iminobutanoate/2-iminopropanoate deaminase 0.41 PagCFBP13505_RS10040 glutamate 5-kinase low > 74
Vibrio cholerae E7946 ATCC 55056 0.43 CSW01_12735 RidA family protein 0.37 CSW01_11575 glutamate 5-kinase low > 62
Klebsiella pneumoniae MKP103 0.43 KDGMDA_11455 2-iminobutanoate/2-iminopropanoate deaminase 0.39 KDGMDA_14005 Glutamate 5-kinase low > 95
Dickeya dadantii 3937 0.43 DDA3937_RS01915 2-iminobutanoate/2-iminopropanoate deaminase 0.36 DDA3937_RS16535 glutamate 5-kinase low > 74
Escherichia coli ECOR27 0.43 NOLOHH_04135 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.40 NOLOHH_02050 proB Glutamate 5-kinase low > 76
Escherichia coli ECRC102 0.43 NIAGMN_09725 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.40 NIAGMN_07535 proB Glutamate 5-kinase low > 80
Escherichia coli ECRC62 0.43 BNILDI_07375 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.40 BNILDI_00245 proB Glutamate 5-kinase low > 75
Escherichia coli BL21 0.43 ECD_04111 enamine/imine deaminase, reaction intermediate detoxification 0.40 ECD_00239 gamma-glutamate kinase low > 61
Escherichia coli ECRC99 0.43 KEDOAH_16280 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.40 KEDOAH_18480 proB Glutamate 5-kinase — —
Escherichia coli ECRC101 0.43 MCAODC_02380 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.40 MCAODC_00195 proB Glutamate 5-kinase low > 88
Pectobacterium carotovorum WPP14 0.43 HER17_RS19520 2-iminobutanoate/2-iminopropanoate deaminase 0.37 HER17_RS04700 glutamate 5-kinase low > 75
Escherichia coli ECRC100 0.43 OKFHMN_11875 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.40 OKFHMN_09675 proB Glutamate 5-kinase low > 79
Escherichia coli Nissle 1917 0.43 ECOLIN_RS24615 2-iminobutanoate/2-iminopropanoate deaminase 0.40 ECOLIN_RS01825 glutamate 5-kinase low > 55
Escherichia fergusonii Becca 0.43 EFB2_04290 2-iminobutanoate/2-iminopropanoate deaminase 0.40 EFB2_03778 Glutamate 5-kinase low > 86
Escherichia coli ECRC98 0.43 JDDGAC_15515 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.40 JDDGAC_13300 proB Glutamate 5-kinase low > 87
Escherichia coli ECOR38 0.43 HEPCGN_10070 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.40 HEPCGN_07780 proB Glutamate 5-kinase low > 88
Escherichia coli BW25113 0.43 b4243 yjgF orf, hypothetical protein (VIMSS) 0.40 b0242 proB gamma-glutamyl kinase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.43 OHPLBJKB_03791 2-iminobutanoate/2-iminopropanoate deaminase 0.40 OHPLBJKB_03398 Glutamate 5-kinase low > 74
Enterobacter sp. TBS_079 0.42 MPMX20_00542 2-iminobutanoate/2-iminopropanoate deaminase 0.39 MPMX20_00927 Glutamate 5-kinase 0.37 37
Dickeya dianthicola ME23 0.42 DZA65_RS01960 2-iminobutanoate/2-iminopropanoate deaminase 0.36 DZA65_RS17695 glutamate 5-kinase low > 75
Dickeya dianthicola 67-19 0.42 HGI48_RS01890 2-iminobutanoate/2-iminopropanoate deaminase 0.36 HGI48_RS16605 glutamate 5-kinase — —
Erwinia amylovora T8 0.41 OLJFJH_07320 2-iminobutanoate/2-iminopropanoate deaminase 0.38 OLJFJH_18410 Glutamate 5-kinase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.41 CA264_17590 RidA family protein 0.28 CA264_07725 glutamate 5-kinase low > 74
Erwinia tracheiphila SCR3 0.41 LU632_RS20960 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.38 LU632_RS01185 proB glutamate 5-kinase low > 74
Erwinia tracheiphila HP pepo 2.2 0.41 IJEDHG_14050 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.38 IJEDHG_15490 proB Glutamate 5-kinase — —
Enterobacter asburiae PDN3 0.40 EX28DRAFT_3444 reactive intermediate/imine deaminase 0.40 EX28DRAFT_2651 glutamate 5-kinase low > 76
Serratia liquefaciens MT49 0.40 IAI46_02265 2-iminobutanoate/2-iminopropanoate deaminase 0.38 IAI46_04430 glutamate 5-kinase low > 86
Synechocystis sp000284455 PCC 6803 0.40 SGL_RS16325 RidA family protein 0.36 SGL_RS04550 glutamate 5-kinase low > 52
Methylophilus sp. DMC18 0.39 GFF1301 2-iminobutanoate/2-iminopropanoate deaminase 0.58 GFF1767 Glutamate 5-kinase low > 43
Ralstonia solanacearum UW163 0.38 UW163_RS22060 endoribonuclease L-PSP 0.58 UW163_RS07480 glutamate 5-kinase — —
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS20925 endoribonuclease L-PSP 0.58 RALBFv3_RS06145 glutamate 5-kinase low > 76
Desulfovibrio vulgaris Miyazaki F 0.34 DvMF_1512 endoribonuclease L-PSP (RefSeq) 0.38 DvMF_1377 gamma-glutamyl kinase (RefSeq) — —
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS16710 endoribonuclease L-PSP 0.57 RR42_RS17940 gamma-glutamyl kinase low > 128
Azospirillum sp. SherDot2 0.32 MPMX19_04018 2-aminomuconate deaminase 0.41 MPMX19_01933 Glutamate 5-kinase — —
Bifidobacterium breve UCC2003 0.32 BBR_RS12070 endoribonuclease L-PSP 0.32 BBR_RS19445 glutamate 5-kinase low > 34
Dinoroseobacter shibae DFL-12 0.31 Dshi_0720 Endoribonuclease L-PSP (RefSeq) 0.36 Dshi_1467 glutamate 5-kinase (RefSeq) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF3622 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.54 GFF1274 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA low > 90
Burkholderia phytofirmans PsJN 0.28 BPHYT_RS34350 endoribonuclease L-PSP 0.58 BPHYT_RS17110 glutamate 5-kinase — —
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_1670 Putative translation initiation inhibitor, yjgF family 0.29 Ga0059261_3512 glutamate 5-kinase (EC 2.7.2.11) (from data) low > 68
Sinorhizobium meliloti 1021 0.27 SMa2289 hypothetical protein 0.40 SMc03776 gamma-glutamyl kinase low > 103
Rhodopseudomonas palustris CGA009 0.25 TX73_018610 RidA family protein 0.40 TX73_000850 glutamate 5-kinase — —

Not shown: 3 genomes with orthologs for Psyr_0208 only; 21 genomes with orthologs for Psyr_0704 only