Conservation of cofitness between Psyr_0025 and Psyr_0704 in Pseudomonas syringae pv. syringae B728a

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0025 shikimate dehydrogenase 1.0 Psyr_0704 glutamate 5-kinase 0.71 4
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0025 shikimate dehydrogenase 1.00 Psyr_0704 glutamate 5-kinase 0.55 74
Pseudomonas simiae WCS417 0.83 PS417_00125 shikimate dehydrogenase 0.93 PS417_23545 gamma-glutamyl kinase — —
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.93 Pf1N1B4_2800 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA — —
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.88 PfGW456L13_1472 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.79 13
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_10670 shikimate dehydrogenase 0.89 AO353_14115 gamma-glutamyl kinase 0.68 38
Pseudomonas sp. RS175 0.81 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.89 PFR28_03769 Glutamate 5-kinase — —
Pseudomonas fluorescens SBW25 0.81 PFLU_RS00120 shikimate dehydrogenase 0.93 PFLU_RS25360 glutamate 5-kinase — —
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS00120 shikimate dehydrogenase 0.93 PFLU_RS25360 glutamate 5-kinase — —
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_11315 shikimate dehydrogenase 0.89 AO356_15815 gamma-glutamyl kinase 0.42 64
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.89 Pf6N2E2_5103 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA — —
Pseudomonas putida KT2440 0.77 PP_0074 shikimate 5-dehydrogenase 0.86 PP_0691 Glutamate 5-kinase — —
Pseudomonas sp. S08-1 0.75 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.86 OH686_16305 Glutamate 5-kinase / RNA-binding C-terminal domain PUA 0.73 54
Pseudomonas stutzeri RCH2 0.73 Psest_0029 shikimate 5-dehydrogenase 0.78 Psest_3384 glutamate 5-kinase — —
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_00280 shikimate dehydrogenase 0.37 CSW01_11575 glutamate 5-kinase low > 62
Dechlorosoma suillum PS 0.56 Dsui_0443 shikimate 5-dehydrogenase 0.62 Dsui_0166 glutamate 5-kinase — —
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS01990 shikimate 5-dehydrogenase 0.59 HSERO_RS01815 gamma-glutamyl kinase 0.62 37
Shewanella sp. ANA-3 0.53 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.37 Shewana3_0954 gamma-glutamyl kinase (RefSeq) 0.91 23
Marinobacter adhaerens HP15 0.52 HP15_3750 shikimate dehydrogenase 0.62 HP15_508 gamma-glutamyl kinase — —
Shewanella loihica PV-4 0.51 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.40 Shew_2848 gamma-glutamyl kinase (RefSeq) 0.78 47
Shewanella oneidensis MR-1 0.50 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.37 SO1121 proB glutamate 5-kinase (NCBI ptt file) 0.89 14
Escherichia coli BL21 0.49 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.40 ECD_00239 gamma-glutamate kinase 0.57 39
Escherichia coli BW25113 0.49 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.40 b0242 proB gamma-glutamyl kinase (NCBI) 0.91 30
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.40 OHPLBJKB_03398 Glutamate 5-kinase low > 73
Escherichia coli Nissle 1917 0.49 ECOLIN_RS18840 shikimate dehydrogenase 0.40 ECOLIN_RS01825 glutamate 5-kinase 0.87 2
Escherichia coli ECRC62 0.49 BNILDI_02165 aroE shikimate dehydrogenase 0.40 BNILDI_00245 proB Glutamate 5-kinase 0.92 20
Escherichia coli ECOR27 0.49 NOLOHH_09355 aroE shikimate dehydrogenase 0.40 NOLOHH_02050 proB Glutamate 5-kinase 0.87 28
Escherichia coli ECRC102 0.49 NIAGMN_15325 aroE shikimate dehydrogenase 0.40 NIAGMN_07535 proB Glutamate 5-kinase — —
Escherichia coli ECRC100 0.49 OKFHMN_17565 aroE shikimate dehydrogenase 0.40 OKFHMN_09675 proB Glutamate 5-kinase 0.93 49
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS27130 shikimate dehydrogenase 0.60 QEN71_RS27270 glutamate 5-kinase 0.69 47
Escherichia coli ECRC98 0.49 JDDGAC_21185 aroE shikimate dehydrogenase 0.40 JDDGAC_13300 proB Glutamate 5-kinase 0.89 7
Escherichia coli ECRC101 0.49 MCAODC_08085 aroE shikimate dehydrogenase 0.40 MCAODC_00195 proB Glutamate 5-kinase 0.76 60
Escherichia coli ECRC99 0.49 KEDOAH_10585 aroE shikimate dehydrogenase 0.40 KEDOAH_18480 proB Glutamate 5-kinase — —
Pantoea sp. MT58 0.49 IAI47_02315 shikimate dehydrogenase 0.40 IAI47_15120 glutamate 5-kinase — —
Paraburkholderia graminis OAS925 0.48 ABIE53_003560 shikimate dehydrogenase 0.59 ABIE53_003588 glutamate 5-kinase — —
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.58 H281DRAFT_06264 glutamate 5-kinase — —
Escherichia fergusonii Becca 0.48 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.40 EFB2_03778 Glutamate 5-kinase low > 86
Burkholderia phytofirmans PsJN 0.48 BPHYT_RS16975 shikimate 5-dehydrogenase 0.58 BPHYT_RS17110 glutamate 5-kinase — —
Ralstonia solanacearum GMI1000 0.48 RS_RS13890 shikimate dehydrogenase 0.57 RS_RS14095 glutamate 5-kinase low > 80
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS05945 shikimate dehydrogenase 0.58 RALBFv3_RS06145 glutamate 5-kinase 0.55 3
Ralstonia solanacearum UW163 0.48 UW163_RS07680 shikimate dehydrogenase 0.58 UW163_RS07480 glutamate 5-kinase — —
Ralstonia solanacearum PSI07 0.48 RPSI07_RS11300 shikimate dehydrogenase 0.57 RPSI07_RS11095 glutamate 5-kinase 0.62 48
Escherichia coli ECOR38 0.47 HEPCGN_16385 aroE shikimate dehydrogenase 0.40 HEPCGN_07780 proB Glutamate 5-kinase 0.83 22
Dickeya dianthicola ME23 0.47 DZA65_RS20315 shikimate dehydrogenase 0.36 DZA65_RS17695 glutamate 5-kinase — —
Enterobacter sp. TBS_079 0.47 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.39 MPMX20_00927 Glutamate 5-kinase 0.87 26
Klebsiella michiganensis M5al 0.47 BWI76_RS25645 shikimate dehydrogenase 0.39 BWI76_RS05840 glutamate 5-kinase 0.75 36
Shewanella amazonensis SB2B 0.47 Sama_0052 shikimate dehydrogenase (RefSeq) 0.40 Sama_2516 gamma-glutamyl kinase (RefSeq) 0.68 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.39 GFF4114 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA low > 78
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS01605 shikimate dehydrogenase 0.56 ABZR87_RS01810 glutamate 5-kinase 0.63 16
Dickeya dianthicola 67-19 0.46 HGI48_RS19190 shikimate dehydrogenase 0.36 HGI48_RS16605 glutamate 5-kinase — —
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS17645 shikimate dehydrogenase 0.57 RR42_RS17940 gamma-glutamyl kinase low > 128
Dickeya dadantii 3937 0.46 DDA3937_RS19100 shikimate dehydrogenase 0.36 DDA3937_RS16535 glutamate 5-kinase — —
Pectobacterium carotovorum WPP14 0.46 HER17_RS02250 shikimate dehydrogenase 0.37 HER17_RS04700 glutamate 5-kinase 0.90 43
Serratia liquefaciens MT49 0.46 IAI46_23240 shikimate dehydrogenase 0.38 IAI46_04430 glutamate 5-kinase 0.72 3
Enterobacter asburiae PDN3 0.46 EX28DRAFT_0046 shikimate dehydrogenase 0.40 EX28DRAFT_2651 glutamate 5-kinase low > 76
Erwinia tracheiphila SCR3 0.44 LU632_RS22445 aroE shikimate dehydrogenase 0.38 LU632_RS01185 proB glutamate 5-kinase low > 74
Rahnella sp. WP5 0.44 EX31_RS15950 shikimate dehydrogenase 0.39 EX31_RS20980 glutamate 5-kinase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.54 GFF1274 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA low > 90
Castellaniella sp019104865 MT123 0.40 ABCV34_RS11620 shikimate dehydrogenase 0.58 ABCV34_RS10800 glutamate 5-kinase low > 48
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.55 Ac3H11_4771 Glutamate 5-kinase (EC 2.7.2.11) 0.80 32
Alteromonas macleodii MIT1002 0.37 MIT1002_00029 Shikimate dehydrogenase 0.31 MIT1002_04056 Glutamate 5-kinase — —
Variovorax sp. SCN45 0.37 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.53 GFF2515 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA low > 127
Acinetobacter radioresistens SK82 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.52 MPMX26_02135 Glutamate 5-kinase low > 36
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.31 Xcc-8004.2326.1 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA low > 74
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS14985 shikimate dehydrogenase 0.32 ABZR86_RS08685 glutamate 5-kinase low > 74
Variovorax sp. OAS795 0.34 ABID97_RS06300 shikimate dehydrogenase 0.56 ABID97_RS23400 glutamate 5-kinase — —
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS08595 shikimate dehydrogenase 0.36 LRK54_RS02375 glutamate 5-kinase low > 59
Rhodanobacter denitrificans MT42 0.33 LRK55_RS08360 shikimate dehydrogenase 0.36 LRK55_RS02130 glutamate 5-kinase low > 63
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_15365 aroE shikimate dehydrogenase 0.34 OKGIIK_09420 proB glutamate 5-kinase low > 52
Lysobacter sp. OAE881 0.31 ABIE51_RS01815 shikimate dehydrogenase 0.30 ABIE51_RS13370 glutamate 5-kinase low > 62
Dinoroseobacter shibae DFL-12 0.25 Dshi_3450 shikimate 5-dehydrogenase (RefSeq) 0.36 Dshi_1467 glutamate 5-kinase (RefSeq) — —
Agrobacterium fabrum C58 0.23 Atu0003 shikimate 5-dehydrogenase 0.40 Atu2780 gamma-glutamyl kinase — —
Phaeobacter inhibens DSM 17395 0.22 PGA1_c35150 shikimate dehydrogenase AroE 0.35 PGA1_c15510 glutamate 5-kinase ProB — —
Sinorhizobium meliloti 1021 0.22 SMc02791 shikimate 5-dehydrogenase 0.40 SMc03776 gamma-glutamyl kinase — —
Desulfovibrio vulgaris Hildenborough JW710 0.21 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.37 DVU0930 proB glutamate 5-kinase (TIGR) — —
Rhodopseudomonas palustris CGA009 0.21 TX73_022410 shikimate dehydrogenase 0.40 TX73_000850 glutamate 5-kinase — —
Azospirillum brasilense Sp245 0.20 AZOBR_RS01765 shikimate 5-dehydrogenase 0.39 AZOBR_RS04095 glutamate 5-kinase — —
Rhodospirillum rubrum S1H 0.19 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.38 Rru_A1239 Glutamate 5-kinase, ProB-related (NCBI) — —
Desulfovibrio vulgaris Miyazaki F 0.19 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.38 DvMF_1377 gamma-glutamyl kinase (RefSeq) — —
Bosea sp. OAE506 0.19 ABIE41_RS04650 shikimate dehydrogenase 0.37 ABIE41_RS07585 glutamate 5-kinase — —
Caulobacter crescentus NA1000 0.19 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.37 CCNA_00316 glutamate 5-kinase 0.84 54
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_00003 shikimate 5-dehydrogenase 0.37 CCNA_00316 glutamate 5-kinase low > 67
Rhizobium sp. OAE497 0.19 ABIE40_RS19250 shikimate dehydrogenase 0.39 ABIE40_RS18920 glutamate 5-kinase — —
Azospirillum sp. SherDot2 0.18 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.41 MPMX19_01933 Glutamate 5-kinase — —
Magnetospirillum magneticum AMB-1 0.18 AMB_RS23010 shikimate dehydrogenase 0.40 AMB_RS20630 glutamate 5-kinase — —
Sphingomonas koreensis DSMZ 15582 0.16 Ga0059261_2194 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.29 Ga0059261_3512 glutamate 5-kinase (EC 2.7.2.11) (from data) 0.83 56
Brevundimonas sp. GW460-12-10-14-LB2 0.15 A4249_RS13660 shikimate dehydrogenase 0.31 A4249_RS16125 glutamate 5-kinase — —
Pedobacter sp. GW460-11-11-14-LB5 0.13 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.27 CA265_RS20855 glutamate 5-kinase (EC 2.7.2.11) (from data) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.12 ABZR88_RS20055 shikimate dehydrogenase 0.27 ABZR88_RS22170 glutamate 5-kinase — —

Not shown: 3 genomes with orthologs for Psyr_0025 only; 11 genomes with orthologs for Psyr_0704 only