Conservation of cofitness between Pf6N2E2_5594 and Pf6N2E2_4162 in Pseudomonas fluorescens FW300-N2E2

91 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E2 1.0 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) 1.0 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) 0.35 4
Pseudomonas fluorescens FW300-N2C3 0.99 AO356_18345 endonuclease III 0.99 AO356_11465 DNA polymerase I 0.27 19
Pseudomonas sp. RS175 0.98 PFR28_03349 Endonuclease III 0.96 PFR28_04624 DNA polymerase I 0.18 76
Pseudomonas fluorescens FW300-N1B4 0.97 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18) 0.95 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas fluorescens GW456-L13 0.96 PfGW456L13_1753 Endonuclease III (EC 4.2.99.18) 0.83 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) 0.43 5
Pseudomonas fluorescens FW300-N2E3 0.96 AO353_04085 endonuclease III 0.89 AO353_10930 DNA polymerase I 0.55 1
Pseudomonas fluorescens SBW25-INTG 0.95 PFLU_RS05740 endonuclease III 0.82 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens SBW25 0.95 PFLU_RS05740 endonuclease III 0.82 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas simiae WCS417 0.95 PS417_05655 endonuclease III 0.82 PS417_00405 DNA polymerase I 0.13 72
Pseudomonas putida KT2440 0.93 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites 0.78 PP_0123 DNA polymerase I, 5 0.16 5
Pseudomonas sp. S08-1 0.92 OH686_03910 endonuclease III 0.75 OH686_12215 DNA polymerase I low > 80
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.82 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.82 Psyr_0270 DNA polymerase I low > 86
Pseudomonas stutzeri RCH2 0.89 Psest_3118 endonuclease III 0.74 Psest_4219 DNA polymerase I 0.38 9
Marinobacter adhaerens HP15 0.81 HP15_1285 endonuclease III 0.54 HP15_293 DNA polymerase I 0.26 25
Kangiella aquimarina DSM 16071 0.80 B158DRAFT_2365 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.55 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Escherichia coli ECRC99 0.75 KEDOAH_00580 nth endonuclease III 0.58 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECRC100 0.75 OKFHMN_27525 nth endonuclease III 0.58 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECRC98 0.75 JDDGAC_02115 nth endonuclease III 0.58 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli ECRC102 0.75 NIAGMN_00540 nth endonuclease III 0.58 NIAGMN_11905 polA DNA polymerase I — —
Escherichia coli ECRC101 0.75 MCAODC_17885 nth endonuclease III 0.58 MCAODC_04650 polA DNA polymerase I — —
Escherichia coli ECOR38 0.75 HEPCGN_05910 nth endonuclease III 0.57 HEPCGN_12785 polA DNA polymerase I — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_02093 Endonuclease III 0.58 OHPLBJKB_04189 DNA polymerase I — —
Escherichia fergusonii Becca 0.75 EFB2_02359 Endonuclease III 0.57 EFB2_04753 DNA polymerase I — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF3641 Endonuclease III (EC 4.2.99.18) 0.56 GFF2216 DNA polymerase I (EC 2.7.7.7) low > 78
Escherichia coli BW25113 0.75 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) 0.58 b3863 polA DNA polymerase I (NCBI) low > 76
Escherichia coli Nissle 1917 0.75 ECOLIN_RS09110 endonuclease III 0.57 ECOLIN_RS22270 DNA polymerase I — —
Escherichia coli ECOR27 0.75 NOLOHH_18045 nth endonuclease III 0.58 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli ECRC62 0.75 BNILDI_16835 nth endonuclease III 0.58 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli BL21 0.75 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) 0.58 ECD_03749 5 — —
Klebsiella michiganensis M5al 0.74 BWI76_RS16385 endonuclease III 0.57 BWI76_RS00355 DNA polymerase I — —
Pectobacterium carotovorum WPP14 0.74 HER17_RS10860 endonuclease III 0.57 HER17_RS21470 DNA polymerase I — —
Pantoea sp. MT58 0.74 IAI47_10475 endonuclease III 0.55 IAI47_00430 DNA polymerase I low > 76
Herbaspirillum seropedicae SmR1 0.74 HSERO_RS08070 endonuclease IV 0.50 HSERO_RS02260 DNA polymerase I 0.28 55
Enterobacter asburiae PDN3 0.74 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.57 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Erwinia tracheiphila SCR3 0.74 LU632_RS11305 nth endonuclease III 0.56 LU632_RS23870 polA DNA polymerase I — —
Serratia liquefaciens MT49 0.74 IAI46_11455 endonuclease III 0.58 IAI46_24985 DNA polymerase I low > 86
Enterobacter sp. TBS_079 0.74 MPMX20_02005 Endonuclease III 0.57 MPMX20_04601 DNA polymerase I low > 85
Shewanella oneidensis MR-1 0.74 SO2514 nth endonuclease III (NCBI ptt file) 0.57 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.73 Sama_1836 endonuclease III (RefSeq) 0.57 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Rahnella sp. WP5 0.73 EX31_RS06590 endonuclease III 0.58 EX31_RS15905 DNA polymerase I low > 89
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_05145 endonuclease III 0.56 CSW01_00560 DNA polymerase I low > 62
Acinetobacter radioresistens SK82 0.72 MPMX26_02306 Endonuclease III 0.47 MPMX26_00574 DNA polymerase I low > 36
Shewanella sp. ANA-3 0.72 Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) 0.57 Shewana3_4109 DNA polymerase I (RefSeq) — —
Dickeya dianthicola ME23 0.72 DZA65_RS11025 endonuclease III 0.57 DZA65_RS22235 DNA polymerase I — —
Rhodanobacter denitrificans FW104-10B01 0.72 LRK54_RS01850 endonuclease III 0.54 LRK54_RS06840 DNA polymerase I low > 59
Rhodanobacter denitrificans MT42 0.72 LRK55_RS01640 endonuclease III 0.54 LRK55_RS06585 DNA polymerase I low > 63
Dickeya dianthicola 67-19 0.72 HGI48_RS10545 endonuclease III 0.57 HGI48_RS21260 DNA polymerase I — —
Dechlorosoma suillum PS 0.71 Dsui_2985 endonuclease III 0.50 Dsui_0459 DNA polymerase I low > 51
Cupriavidus basilensis FW507-4G11 0.71 RR42_RS05970 endonuclease III 0.49 RR42_RS15050 DNA polymerase I 0.49 25
Dickeya dadantii 3937 0.71 DDA3937_RS10545 endonuclease III 0.57 DDA3937_RS00105 DNA polymerase I — —
Dyella japonica UNC79MFTsu3.2 0.71 ABZR86_RS08185 endonuclease III 0.52 ABZR86_RS17015 DNA polymerase I 0.77 1
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_04675 nth endonuclease III 0.53 OKGIIK_16785 polA DNA polymerase I low > 52
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.3350.1 Endonuclease III (EC 4.2.99.18) 0.50 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Ralstonia solanacearum PSI07 0.70 RPSI07_RS19265 endonuclease III 0.49 RPSI07_RS13480 DNA polymerase I low > 81
Shewanella loihica PV-4 0.70 Shew_2072 endonuclease III (RefSeq) 0.56 Shew_3714 DNA polymerase I (RefSeq) low > 60
Ralstonia solanacearum GMI1000 0.70 RS_RS04975 endonuclease III 0.49 RS_RS11195 DNA polymerase I 0.30 64
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS09915 endonuclease III 0.50 ABZR87_RS15680 DNA polymerase I low > 80
Ralstonia solanacearum UW163 0.70 UW163_RS11660 endonuclease III 0.49 UW163_RS09920 DNA polymerase I — —
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS14195 endonuclease III 0.49 RALBFv3_RS03750 DNA polymerase I low > 76
Variovorax sp. SCN45 0.69 GFF418 Endonuclease III (EC 4.2.99.18) 0.48 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS24560 endonuclease III 0.51 QEN71_RS17885 DNA polymerase I — —
Paraburkholderia graminis OAS925 0.68 ABIE53_001423 endonuclease-3 0.49 ABIE53_004852 DNA polymerase-1 low > 113
Paraburkholderia bryophila 376MFSha3.1 0.68 H281DRAFT_00293 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III 0.48 H281DRAFT_06022 DNA polymerase I low > 103
Acidovorax sp. GW101-3H11 0.68 Ac3H11_1010 Endonuclease III (EC 4.2.99.18) 0.47 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Variovorax sp. OAS795 0.67 ABID97_RS17315 endonuclease III 0.47 ABID97_RS09180 DNA polymerase I low > 91
Castellaniella sp019104865 MT123 0.67 ABCV34_RS08465 endonuclease III 0.46 ABCV34_RS02195 DNA polymerase I low > 48
Lysobacter sp. OAE881 0.67 ABIE51_RS07560 endonuclease III 0.49 ABIE51_RS02010 DNA polymerase I low > 62
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS06080 endonuclease IV 0.48 BPHYT_RS33610 DNA polymerase I low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.67 GFF4003 Endonuclease III (EC 4.2.99.18) 0.44 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Azospirillum sp. SherDot2 0.63 MPMX19_02500 Endonuclease III 0.36 MPMX19_04869 DNA polymerase I low > 112
Azospirillum brasilense Sp245 0.62 AZOBR_RS01565 endonuclease III 0.36 AZOBR_RS30685 DNA polymerase 0.78 2
Sphingomonas koreensis DSMZ 15582 0.59 Ga0059261_2546 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.33 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) low > 68
Magnetospirillum magneticum AMB-1 0.58 AMB_RS21105 endonuclease III 0.38 AMB_RS21305 DNA polymerase I — —
Rhodospirillum rubrum S1H 0.58 Rru_A0153 Endonuclease III/Nth (NCBI) 0.33 Rru_A3514 DNA polymerase A (NCBI) — —
Dinoroseobacter shibae DFL-12 0.57 Dshi_3023 endonuclease III (RefSeq) 0.37 Dshi_2909 DNA polymerase I (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.56 PGA1_c29040 endonuclease III 0.37 PGA1_c31780 DNA polymerase I low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.54 A4249_RS15000 endonuclease III 0.36 A4249_RS13840 DNA polymerase I — —
Caulobacter crescentus NA1000 Δfur 0.53 CCNA_03847 endonuclease III 0.36 CCNA_03577 DNA polymerase I low > 67
Caulobacter crescentus NA1000 0.53 CCNA_03847 endonuclease III 0.36 CCNA_03577 DNA polymerase I low > 66
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_14955 endonuclease III 0.33 CA264_16535 DNA polymerase I — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.44 Echvi_1263 endonuclease III 0.34 Echvi_1032 DNA polymerase I low > 79
Bacteroides ovatus ATCC 8483 0.44 BACOVA_04414 endonuclease III 0.33 BACOVA_01357 DNA-directed DNA polymerase low > 94
Bacteroides stercoris CC31F 0.44 HMPREF1181_RS05445 endonuclease III 0.33 HMPREF1181_RS02070 DNA polymerase I low > 56
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS16725 endonuclease III 0.35 ABZR88_RS20185 DNA polymerase I low > 71
Bacteroides thetaiotaomicron VPI-5482 0.42 BT1671 endonuclease III (NCBI ptt file) 0.33 BT3260 DNA polymerase I (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS09755 endonuclease III 0.33 HMPREF1078_RS06335 DNA polymerase I low > 61
Fusobacterium nucleatum SB010 0.40 HUW76_00260 endonuclease III 0.25 HUW76_04385 DNA polymerase I low > 35
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS00605 endonuclease III 0.33 CA265_RS19630 DNA polymerase I low > 88
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_0447 nth DNA-(apurinic or apyrimidinic site) lyase / endonuclease III 0.30 Synpcc7942_0194 polA DNA polymerase I — —
Alteromonas macleodii MIT1002 0.32 MIT1002_01251 Endonuclease III 0.58 MIT1002_00014 DNA polymerase I low > 70
Mycobacterium tuberculosis H37Rv 0.30 Rv3674c Probable endonuclease III Nth (DNA-(apurinic or apyrimidinic site)lyase) (AP lyase) (AP endonuclease class I) (endodeoxyribonuclease (apurinic or apyrimidinic)) (deoxyribonuclease (apurinic or apyrimidinic)) 0.19 Rv1629 Probable DNA polymerase I PolA — —

Not shown: 4 genomes with orthologs for Pf6N2E2_5594 only; 0 genomes with orthologs for Pf6N2E2_4162 only