| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_5310 | | junction-specific ATP-dependent DNA helicase | 1.0 | PP_5309 | | oxidative and nitrosative stress transcriptional dual regulator | 0.59 | 2 |
| Pseudomonas fluorescens SBW25 | 0.89 | PFLU_RS29550 | | ATP-dependent DNA helicase RecG | 0.88 | PFLU_RS29545 | | hydrogen peroxide-inducible genes activator | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.89 | PFLU_RS29550 | | ATP-dependent DNA helicase RecG | 0.88 | PFLU_RS29545 | | hydrogen peroxide-inducible genes activator | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.89 | Pf1N1B4_2105 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | 0.89 | Pf1N1B4_2106 | | Hydrogen peroxide-inducible genes activator | 0.38 | 19 |
| Pseudomonas fluorescens GW456-L13 | 0.89 | PfGW456L13_772 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | 0.88 | PfGW456L13_773 | | Hydrogen peroxide-inducible genes activator | 0.68 | 2 |
| Pseudomonas simiae WCS417 | 0.89 | PS417_27870 | | ATP-dependent DNA helicase RecG | 0.89 | PS417_27865 | | LysR family transcriptional regulator | 0.46 | 4 |
| Pseudomonas fluorescens FW300-N2E3 | 0.89 | AO353_09320 | | ATP-dependent DNA helicase RecG | 0.88 | AO353_09315 | | LysR family transcriptional regulator | 0.61 | 3 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.87 | Psyr_0201 | | ATP-dependent DNA helicase RecG | 0.92 | Psyr_0202 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.87 | Psyr_0201 | | ATP-dependent DNA helicase RecG | 0.92 | Psyr_0202 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas sp. RS175 | 0.87 | PFR28_04435 | | ATP-dependent DNA helicase RecG | 0.90 | PFR28_04434 | | Hydrogen peroxide-inducible genes activator | 0.32 | 16 |
| Pseudomonas fluorescens FW300-N2E2 | 0.87 | Pf6N2E2_4352 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | 0.93 | Pf6N2E2_4353 | | Hydrogen peroxide-inducible genes activator | 0.50 | 6 |
| Pseudomonas fluorescens FW300-N2C3 | 0.87 | AO356_12380 | | ATP-dependent DNA helicase RecG | 0.90 | AO356_12385 | | LysR family transcriptional regulator | 0.35 | 40 |
| Pseudomonas stutzeri RCH2 | 0.83 | Psest_4192 | | ATP-dependent DNA helicase RecG | 0.87 | Psest_4191 | | Transcriptional regulator | — | — |
| Pseudomonas sp. S08-1 | 0.82 | OH686_13505 | | ATP-dependent DNA helicase RecG | 0.85 | OH686_13510 | | Hydrogen peroxide-inducible genes activator | low | > 80 |
| Marinobacter adhaerens HP15 | 0.60 | HP15_309 | | DNA helicase, ATP-dependent, RecG | 0.64 | HP15_308 | | oxidative stress regulatory protein OxyR | 0.42 | 38 |
| Alteromonas macleodii MIT1002 | 0.57 | MIT1002_00111 | | ATP-dependent DNA helicase RecG | 0.25 | MIT1002_01120 | | Morphology and auto-aggregation control protein | low | > 70 |
| Shewanella amazonensis SB2B | 0.57 | Sama_3375 | | ATP-dependent DNA helicase RecG (RefSeq) | 0.23 | Sama_0860 | | LysR family transcriptional regulator (RefSeq) | 0.38 | 45 |
| Pantoea sp. MT58 | 0.56 | IAI47_00500 | | ATP-dependent DNA helicase RecG | 0.34 | IAI47_00930 | | DNA-binding transcriptional regulator OxyR | 0.52 | 31 |
| Escherichia coli ECRC101 | 0.56 | OKFHMN_15545 | recG | ATP-dependent DNA helicase RecG | 0.36 | OKFHMN_13565 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.56 | GFF355 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | 0.35 | GFF2347 | | Hydrogen peroxide-inducible genes activator | 0.51 | 48 |
| Escherichia coli ECRC101 | 0.56 | MCAODC_06055 | recG | ATP-dependent DNA helicase RecG | 0.36 | MCAODC_04065 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli ECRC102 | 0.56 | NIAGMN_13305 | recG | ATP-dependent DNA helicase RecG | 0.36 | NIAGMN_11315 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli ECRC99 | 0.56 | KEDOAH_12600 | recG | ATP-dependent DNA helicase RecG | 0.36 | KEDOAH_14595 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Shewanella sp. ANA-3 | 0.56 | Shewana3_0348 | | ATP-dependent DNA helicase RecG (RefSeq) | 0.25 | Shewana3_3046 | | LysR family transcriptional regulator (RefSeq) | 0.44 | 42 |
| Escherichia coli ECRC98 | 0.56 | JDDGAC_19170 | recG | ATP-dependent DNA helicase RecG | 0.36 | JDDGAC_17190 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Serratia liquefaciens MT49 | 0.56 | IAI46_24905 | | ATP-dependent DNA helicase RecG | 0.34 | IAI46_24475 | | DNA-binding transcriptional regulator OxyR | 0.51 | 46 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.56 | OHPLBJKB_00049 | | ATP-dependent DNA helicase RecG | 0.36 | OHPLBJKB_04089 | | Hydrogen peroxide-inducible genes activator | low | > 73 |
| Erwinia tracheiphila SCR3 | 0.56 | LU632_RS22190 | recG | ATP-dependent DNA helicase RecG | 0.34 | LU632_RS19590 | oxyR | DNA-binding transcriptional regulator OxyR | low | > 74 |
| Escherichia fergusonii Becca | 0.56 | EFB2_00136 | | ATP-dependent DNA helicase RecG | 0.36 | EFB2_04651 | | Hydrogen peroxide-inducible genes activator | low | > 86 |
| Escherichia coli ECRC62 | 0.56 | BNILDI_04090 | recG | ATP-dependent DNA helicase RecG | 0.36 | BNILDI_05825 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli ECOR38 | 0.56 | HEPCGN_14365 | recG | ATP-dependent DNA helicase RecG | 0.36 | HEPCGN_12210 | oxyR | DNA-binding transcriptional regulator OxyR | 0.84 | 48 |
| Escherichia coli ECOR27 | 0.56 | NOLOHH_07425 | recG | ATP-dependent DNA helicase RecG | 0.36 | NOLOHH_05700 | oxyR | DNA-binding transcriptional regulator OxyR | low | > 57 |
| Escherichia coli BW25113 | 0.56 | b3652 | recG | ATP-dependent DNA helicase (NCBI) | 0.36 | b3961 | oxyR | DNA-binding transcriptional dual regulator (NCBI) | 0.32 | 44 |
| Escherichia coli BL21 | 0.56 | ECD_03509 | | ATP-dependent DNA helicase | 0.36 | ECD_03846 | | oxidative and nitrosative stress transcriptional regulator | 0.84 | 6 |
| Pectobacterium carotovorum WPP14 | 0.56 | HER17_RS21395 | | ATP-dependent DNA helicase RecG | 0.36 | HER17_RS00955 | | DNA-binding transcriptional regulator OxyR | low | > 75 |
| Rahnella sp. WP5 | 0.56 | EX31_RS15820 | | ATP-dependent DNA helicase RecG | 0.35 | EX31_RS14170 | | DNA-binding transcriptional regulator OxyR | low | > 89 |
| Enterobacter asburiae PDN3 | 0.56 | EX28DRAFT_3901 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | 0.36 | EX28DRAFT_4424 | | Transcriptional regulator | — | — |
| Escherichia coli Nissle 1917 | 0.56 | ECOLIN_RS20800 | | ATP-dependent DNA helicase RecG | 0.36 | ECOLIN_RS22870 | | DNA-binding transcriptional regulator OxyR | low | > 52 |
| Shewanella loihica PV-4 | 0.55 | Shew_3507 | | ATP-dependent DNA helicase RecG (RefSeq) | 0.22 | Shew_1035 | | LysR family transcriptional regulator (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.55 | SO4364 | recG | ATP-dependent DNA helicase RecG (NCBI ptt file) | 0.25 | SO1328 | | transcriptional regulator, LysR family (NCBI ptt file) | low | > 76 |
| Enterobacter sp. TBS_079 | 0.55 | MPMX20_00084 | | ATP-dependent DNA helicase RecG | 0.36 | MPMX20_04519 | | Hydrogen peroxide-inducible genes activator | low | > 85 |
| Dyella japonica UNC79MFTsu3.2 | 0.55 | ABZR86_RS11840 | | ATP-dependent DNA helicase RecG | 0.30 | ABZR86_RS19355 | | DNA-binding transcriptional regulator OxyR | low | > 74 |
| Dickeya dadantii 3937 | 0.55 | DDA3937_RS00170 | | ATP-dependent DNA helicase RecG | 0.36 | DDA3937_RS00970 | | DNA-binding transcriptional regulator OxyR | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.55 | LRK55_RS11530 | | ATP-dependent DNA helicase RecG | 0.30 | LRK55_RS04545 | | LysR substrate-binding domain-containing protein | low | > 63 |
| Acinetobacter radioresistens SK82 | 0.55 | MPMX26_02732 | | ATP-dependent DNA helicase RecG | 0.27 | MPMX26_02334 | | Hydrogen peroxide-inducible genes activator | low | > 36 |
| Dickeya dianthicola ME23 | 0.55 | DZA65_RS22160 | | ATP-dependent DNA helicase RecG | 0.36 | DZA65_RS21450 | | DNA-binding transcriptional regulator OxyR | 0.66 | 2 |
| Klebsiella michiganensis M5al | 0.55 | BWI76_RS27440 | | DNA helicase RecG | 0.35 | BWI76_RS00865 | | DNA-binding transcriptional regulator OxyR | low | > 92 |
| Rhodanobacter denitrificans FW104-10B01 | 0.55 | LRK54_RS11805 | | ATP-dependent DNA helicase RecG | 0.30 | LRK54_RS04765 | | LysR substrate-binding domain-containing protein | low | > 59 |
| Dickeya dianthicola 67-19 | 0.55 | HGI48_RS21190 | | ATP-dependent DNA helicase RecG | 0.36 | HGI48_RS20405 | | DNA-binding transcriptional regulator OxyR | 0.80 | 2 |
| Vibrio cholerae E7946 ATCC 55056 | 0.54 | CSW01_13680 | | DNA helicase RecG | 0.32 | CSW01_13340 | | DNA-binding transcriptional regulator OxyR | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.54 | OKGIIK_12090 | recG | ATP-dependent DNA helicase RecG | 0.32 | OKGIIK_01995 | lysR | DNA-binding transcriptional regulator OxyR | low | > 52 |
| Lysobacter sp. OAE881 | 0.53 | ABIE51_RS17230 | | ATP-dependent DNA helicase RecG | 0.30 | ABIE51_RS05475 | | LysR substrate-binding domain-containing protein | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.51 | Xcc-8004.1204.1 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | 0.30 | Xcc-8004.4224.1 | | Hydrogen peroxide-inducible genes activator | low | > 74 |
| Kangiella aquimarina DSM 16071 | 0.51 | B158DRAFT_0566 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | 0.54 | B158DRAFT_0567 | | Transcriptional regulator | 0.85 | 2 |
| Cupriavidus basilensis FW507-4G11 | 0.47 | RR42_RS17390 | | ATP-dependent DNA helicase RecG | 0.48 | RR42_RS17385 | | LysR family transcriptional regulator | 0.42 | 29 |
| Burkholderia phytofirmans PsJN | 0.47 | BPHYT_RS03400 | | ATP-dependent DNA helicase RecG | 0.50 | BPHYT_RS03470 | | LysR family transcriptional regulator | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.46 | QEN71_RS26630 | | ATP-dependent DNA helicase RecG | 0.51 | QEN71_RS26625 | | LysR substrate-binding domain-containing protein | — | — |
| Paraburkholderia graminis OAS925 | 0.46 | ABIE53_000833 | | ATP-dependent DNA helicase RecG | 0.50 | ABIE53_000834 | | LysR family hydrogen peroxide-inducible transcriptional activator | low | > 113 |
| Ralstonia sp. UNC404CL21Col | 0.46 | ABZR87_RS01270 | | ATP-dependent DNA helicase RecG | 0.50 | ABZR87_RS01255 | | LysR substrate-binding domain-containing protein | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.46 | H281DRAFT_04672 | | ATP-dependent DNA helicase RecG | 0.51 | H281DRAFT_04673 | | transcriptional regulator, LysR family | low | > 103 |
| Ralstonia solanacearum PSI07 | 0.46 | RPSI07_RS11625 | | DNA helicase RecG | 0.51 | RPSI07_RS11690 | | hydrogen peroxide-inducible genes activator | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.46 | RS_RS13565 | | DNA helicase RecG | 0.51 | RS_RS13470 | | hydrogen peroxide-inducible genes activator | — | — |
| Ralstonia solanacearum UW163 | 0.46 | UW163_RS07950 | | DNA helicase RecG | 0.51 | UW163_RS08020 | | hydrogen peroxide-inducible genes activator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.46 | RALBFv3_RS05675 | | DNA helicase RecG | 0.51 | RALBFv3_RS05605 | | hydrogen peroxide-inducible genes activator | low | > 76 |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS06165 | | ATP-dependent DNA helicase RecG | 0.52 | HSERO_RS18935 | | LysR family transcriptional regulator | low | > 78 |
| Dechlorosoma suillum PS | 0.45 | Dsui_0311 | | ATP-dependent DNA helicase RecG | 0.55 | Dsui_0823 | | transcriptional regulator | low | > 51 |
| Acidovorax sp. GW101-3H11 | 0.44 | Ac3H11_781 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | 0.47 | Ac3H11_784 | | Hydrogen peroxide-inducible genes activator | low | > 79 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.43 | GFF2802 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | 0.44 | GFF2803 | | Hydrogen peroxide-inducible genes activator | low | > 90 |
| Castellaniella sp019104865 MT123 | 0.43 | ABCV34_RS03570 | | ATP-dependent DNA helicase RecG | 0.52 | ABCV34_RS03575 | | LysR substrate-binding domain-containing protein | low | > 48 |
| Variovorax sp. OAS795 | 0.41 | ABID97_RS01575 | | ATP-dependent DNA helicase RecG | 0.46 | ABID97_RS01570 | | LysR substrate-binding domain-containing protein | low | > 91 |
| Variovorax sp. SCN45 | 0.40 | GFF5538 | | ATP-dependent DNA helicase RecG (EC 3.6.4.12) | 0.47 | GFF5549 | | Hydrogen peroxide-inducible genes activator => OxyR | low | > 127 |
| Magnetospirillum magneticum AMB-1 | 0.35 | AMB_RS12400 | | ATP-dependent DNA helicase RecG | 0.31 | AMB_RS03045 | | hydrogen peroxide-inducible genes activator | — | — |
| Sinorhizobium meliloti 1021 | 0.35 | SMc00228 | | ATP-dependent DNA helicase RecG | 0.30 | SMc00818 | | hydrogen peroxide-inducible genes activator (morphology and AUTO-aggregation control protein) | low | > 103 |
| Rhizobium sp. OAE497 | 0.35 | ABIE40_RS09300 | | ATP-dependent DNA helicase RecG | 0.24 | ABIE40_RS15045 | | hydrogen peroxide-inducible genes activator | low | > 107 |
| Azospirillum brasilense Sp245 | 0.35 | AZOBR_RS09850 | | ATP-dependent DNA helicase RecG | 0.37 | AZOBR_RS31340 | | LysR family transcriptional regulator | low | > 97 |
| Phocaeicola dorei CL03T12C01 | 0.34 | ABI39_RS02470 | | ATP-dependent DNA helicase RecG | 0.27 | ABI39_RS06075 | | hydrogen peroxide-inducible genes activator | low | > 72 |
| Agrobacterium fabrum C58 | 0.34 | Atu1780 | | ATP-dependent DNA helicase | 0.29 | Atu4641 | | LysR family transcriptional regulator | low | > 89 |
| Azospirillum sp. SherDot2 | 0.34 | MPMX19_00951 | | ATP-dependent DNA helicase RecG | 0.37 | MPMX19_04930 | | Hydrogen peroxide-inducible genes activator | — | — |
| Caulobacter crescentus NA1000 | 0.33 | CCNA_01504 | | ATP-dependent DNA helicase recG | 0.32 | CCNA_03811 | | LysR-family transcriptional regulator | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.33 | CCNA_01504 | | ATP-dependent DNA helicase recG | 0.32 | CCNA_03811 | | LysR-family transcriptional regulator | — | — |
| Parabacteroides merdae CL09T00C40 | 0.33 | HMPREF1078_RS12765 | | ATP-dependent DNA helicase RecG | 0.27 | HMPREF1078_RS01140 | | hydrogen peroxide-inducible genes activator | — | — |
| Bacteroides stercoris CC31F | 0.33 | HMPREF1181_RS06615 | | ATP-dependent DNA helicase RecG | 0.27 | HMPREF1181_RS02160 | | hydrogen peroxide-inducible genes activator | low | > 56 |
| Phaeobacter inhibens DSM 17395 | 0.33 | PGA1_c14380 | | ATP-dependent DNA helicase RecG | 0.30 | PGA1_78p00040 | | hydrogen peroxide-inducible genes activator OxyR | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.33 | BT3924 | | ATP-dependent DNA helicase recG (NCBI ptt file) | 0.28 | BT4716 | | redox-sensitive transcriptional activator (NCBI ptt file) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.33 | Dshi_1510 | | DEAD/DEAH box helicase domain protein (RefSeq) | 0.29 | Dshi_0727 | | transcriptional regulator, LysR family (RefSeq) | low | > 64 |
| Sphingomonas koreensis DSMZ 15582 | 0.32 | Ga0059261_0958 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | 0.31 | Ga0059261_0159 | | Transcriptional regulator | low | > 68 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.32 | CA264_15020 | | DNA helicase RecG | 0.30 | CA264_13765 | | DNA-binding transcriptional regulator OxyR | low | > 74 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.32 | CA265_RS22835 | | ATP-dependent DNA helicase RecG | 0.29 | CA265_RS19680 | | DNA-binding transcriptional regulator OxyR | low | > 88 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.31 | Echvi_1162 | | ATP-dependent DNA helicase RecG | 0.30 | Echvi_1045 | | Transcriptional regulator | low | > 79 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.31 | ABZR88_RS17240 | | ATP-dependent DNA helicase RecG | 0.29 | ABZR88_RS18535 | | hydrogen peroxide-inducible genes activator | low | > 71 |
| Rhodopseudomonas palustris CGA009 | 0.30 | TX73_013795 | | ATP-dependent DNA helicase RecG | 0.25 | TX73_002235 | | LysR substrate-binding domain-containing protein | low | > 86 |
| Bosea sp. OAE506 | 0.30 | ABIE41_RS15815 | | ATP-dependent DNA helicase RecG | 0.29 | ABIE41_RS01195 | | hydrogen peroxide-inducible genes activator | low | > 77 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.29 | A4249_RS04765 | | ATP-dependent DNA helicase RecG | 0.24 | A4249_RS12755 | | hydrogen peroxide-inducible genes activator | low | > 48 |
| Rhodospirillum rubrum S1H | 0.28 | Rru_A1728 | | ATP-dependent DNA helicase RecG (NCBI) | 0.32 | Rru_A2782 | | Transcriptional Regulator, LysR family (NCBI) | — | — |
Not shown: 4 genomes with orthologs for PP_5310 only; 1 genomes with orthologs for PP_5309 only