Conservation of cofitness between PP_5310 and PP_5230 in Pseudomonas putida KT2440

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5310 junction-specific ATP-dependent DNA helicase 1.0 PP_5230 Tyrosine recombinase XerC 0.46 18
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.75 PFLU_RS29280 tyrosine recombinase XerC 0.40 18
Pseudomonas fluorescens SBW25 0.89 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.75 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.78 Pf1N1B4_2171 Tyrosine recombinase XerC low > 87
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.79 PfGW456L13_842 Tyrosine recombinase XerC low > 87
Pseudomonas simiae WCS417 0.89 PS417_27870 ATP-dependent DNA helicase RecG 0.75 PS417_27595 recombinase XerC low > 88
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_09320 ATP-dependent DNA helicase RecG 0.78 AO353_09050 recombinase XerC 0.51 11
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_0201 ATP-dependent DNA helicase RecG 0.75 Psyr_0185 tyrosine recombinase XerC subunit 0.45 11
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_0201 ATP-dependent DNA helicase RecG 0.75 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas sp. RS175 0.87 PFR28_04435 ATP-dependent DNA helicase RecG 0.78 PFR28_04378 Tyrosine recombinase XerC low > 88
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_12380 ATP-dependent DNA helicase RecG 0.78 AO356_12725 recombinase XerC 0.68 1
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.78 Pf6N2E2_4416 Tyrosine recombinase XerC 0.65 1
Pseudomonas stutzeri RCH2 0.83 Psest_4192 ATP-dependent DNA helicase RecG 0.75 Psest_3767 tyrosine recombinase XerC — —
Pseudomonas sp. S08-1 0.82 OH686_13505 ATP-dependent DNA helicase RecG 0.74 OH686_13785 tyrosine recombinase XerC low > 80
Marinobacter adhaerens HP15 0.60 HP15_309 DNA helicase, ATP-dependent, RecG 0.45 HP15_250 site-specific tyrosine recombinase XerC low > 73
Alteromonas macleodii MIT1002 0.57 MIT1002_00111 ATP-dependent DNA helicase RecG 0.41 MIT1002_00157 Tyrosine recombinase XerC low > 70
Shewanella amazonensis SB2B 0.57 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.42 Sama_3247 integrase/recombinase XerC (RefSeq) 0.49 9
Pantoea sp. MT58 0.56 IAI47_00500 ATP-dependent DNA helicase RecG 0.45 IAI47_18400 tyrosine recombinase XerC 0.46 64
Escherichia coli ECRC102 0.56 NIAGMN_13305 recG ATP-dependent DNA helicase RecG 0.45 NIAGMN_12175 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC99 0.56 KEDOAH_12600 recG ATP-dependent DNA helicase RecG 0.45 KEDOAH_13730 xerC tyrosine recombinase XerC — —
Shewanella sp. ANA-3 0.56 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.42 Shewana3_0393 tyrosine recombinase XerC (RefSeq) 0.47 24
Escherichia coli ECRC101 0.56 OKFHMN_15545 recG ATP-dependent DNA helicase RecG 0.45 OKFHMN_14420 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC98 0.56 JDDGAC_19170 recG ATP-dependent DNA helicase RecG 0.45 JDDGAC_18045 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC101 0.56 MCAODC_06055 recG ATP-dependent DNA helicase RecG 0.45 MCAODC_04925 xerC tyrosine recombinase XerC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.45 GFF239 Tyrosine recombinase XerC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 0.45 OHPLBJKB_04239 Tyrosine recombinase XerC low > 73
Serratia liquefaciens MT49 0.56 IAI46_24905 ATP-dependent DNA helicase RecG 0.46 IAI46_00725 tyrosine recombinase XerC 0.46 58
Escherichia fergusonii Becca 0.56 EFB2_00136 ATP-dependent DNA helicase RecG 0.45 EFB2_04826 Tyrosine recombinase XerC low > 86
Escherichia coli ECOR27 0.56 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 0.45 NOLOHH_06550 xerC tyrosine recombinase XerC — —
Erwinia tracheiphila SCR3 0.56 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.45 LU632_RS24135 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC62 0.56 BNILDI_04090 recG ATP-dependent DNA helicase RecG 0.45 BNILDI_04985 xerC tyrosine recombinase XerC — —
Escherichia coli ECOR38 0.56 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 0.45 HEPCGN_13125 xerC tyrosine recombinase XerC low > 85
Escherichia coli BL21 0.56 ECD_03509 ATP-dependent DNA helicase 0.45 ECD_03687 site-specific tyrosine recombinase 0.73 16
Enterobacter asburiae PDN3 0.56 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.45 EX28DRAFT_4480 tyrosine recombinase XerC — —
Escherichia coli BW25113 0.56 b3652 recG ATP-dependent DNA helicase (NCBI) 0.45 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) low > 76
Pectobacterium carotovorum WPP14 0.56 HER17_RS21395 ATP-dependent DNA helicase RecG 0.45 HER17_RS01350 tyrosine recombinase XerC low > 75
Rahnella sp. WP5 0.56 EX31_RS15820 ATP-dependent DNA helicase RecG 0.47 EX31_RS15165 tyrosine recombinase XerC low > 89
Escherichia coli Nissle 1917 0.56 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 0.45 ECOLIN_RS21875 tyrosine recombinase XerC 0.74 11
Shewanella loihica PV-4 0.55 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.43 Shew_0325 tyrosine recombinase XerC (RefSeq) low > 60
Shewanella oneidensis MR-1 0.55 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.42 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.70 2
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.48 ABZR86_RS15025 tyrosine recombinase XerC 0.75 20
Enterobacter sp. TBS_079 0.55 MPMX20_00084 ATP-dependent DNA helicase RecG 0.43 MPMX20_04465 Tyrosine recombinase XerC 0.38 31
Dickeya dadantii 3937 0.55 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.45 DDA3937_RS19890 tyrosine recombinase XerC — —
Rhodanobacter denitrificans MT42 0.55 LRK55_RS11530 ATP-dependent DNA helicase RecG 0.45 LRK55_RS08300 tyrosine recombinase XerC low > 63
Acinetobacter radioresistens SK82 0.55 MPMX26_02732 ATP-dependent DNA helicase RecG 0.34 MPMX26_02230 Tyrosine recombinase XerC — —
Dickeya dianthicola ME23 0.55 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.44 DZA65_RS21090 tyrosine recombinase XerC low > 75
Klebsiella michiganensis M5al 0.55 BWI76_RS27440 DNA helicase RecG 0.46 BWI76_RS01210 tyrosine recombinase XerC low > 92
Dickeya dianthicola 67-19 0.55 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.44 HGI48_RS20045 tyrosine recombinase XerC low > 71
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS11805 ATP-dependent DNA helicase RecG 0.45 LRK54_RS08535 tyrosine recombinase XerC low > 59
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_13680 DNA helicase RecG 0.41 CSW01_00650 tyrosine recombinase XerC 0.73 11
Rhodanobacter sp. FW510-T8 0.54 OKGIIK_12090 recG ATP-dependent DNA helicase RecG 0.49 OKGIIK_15325 xerC tyrosine recombinase XerC — —
Lysobacter sp. OAE881 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG 0.45 ABIE51_RS03035 tyrosine recombinase XerC 0.82 8
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.48 Xcc-8004.847.1 Site-specific tyrosine recombinase — —
Kangiella aquimarina DSM 16071 0.51 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.46 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.78 5
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS03400 ATP-dependent DNA helicase RecG 0.37 BPHYT_RS01655 tyrosine recombinase XerC — —
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS17390 ATP-dependent DNA helicase RecG 0.39 RR42_RS00615 recombinase XerC 0.40 38
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS26630 ATP-dependent DNA helicase RecG 0.37 QEN71_RS00355 tyrosine recombinase XerC — —
Paraburkholderia graminis OAS925 0.46 ABIE53_000833 ATP-dependent DNA helicase RecG 0.37 ABIE53_000426 integrase/recombinase XerC — —
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04672 ATP-dependent DNA helicase RecG 0.37 H281DRAFT_02202 integrase/recombinase XerC — —
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS01270 ATP-dependent DNA helicase RecG 0.39 ABZR87_RS05065 tyrosine recombinase XerC 0.65 6
Ralstonia solanacearum GMI1000 0.46 RS_RS13565 DNA helicase RecG 0.37 RS_RS00260 Tyrosine recombinase XerC 1 — —
Ralstonia solanacearum PSI07 0.46 RPSI07_RS11625 DNA helicase RecG 0.40 RPSI07_RS23690 tyrosine recombinase XerC low > 81
Ralstonia solanacearum UW163 0.46 UW163_RS07950 DNA helicase RecG 0.37 UW163_RS03905 tyrosine recombinase XerC — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS05675 DNA helicase RecG 0.37 RALBFv3_RS09675 tyrosine recombinase XerC 0.33 43
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.40 HSERO_RS21475 recombinase XerC low > 78
Dechlorosoma suillum PS 0.45 Dsui_0311 ATP-dependent DNA helicase RecG 0.43 Dsui_0651 tyrosine recombinase XerC low > 51
Acidovorax sp. GW101-3H11 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.35 Ac3H11_1995 Tyrosine recombinase XerC low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.40 GFF547 Tyrosine recombinase XerC low > 90
Castellaniella sp019104865 MT123 0.43 ABCV34_RS03570 ATP-dependent DNA helicase RecG 0.37 ABCV34_RS13455 tyrosine recombinase XerC low > 48
Variovorax sp. OAS795 0.41 ABID97_RS01575 ATP-dependent DNA helicase RecG 0.38 ABID97_RS06150 tyrosine recombinase XerC 0.70 1
Variovorax sp. SCN45 0.40 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.38 GFF4490 Site-specific tyrosine recombinase XerC low > 127
Magnetospirillum magneticum AMB-1 0.35 AMB_RS12400 ATP-dependent DNA helicase RecG 0.26 AMB_RS21485 tyrosine recombinase XerC — —
Sinorhizobium meliloti 1021 0.35 SMc00228 ATP-dependent DNA helicase RecG 0.26 SMc02489 site-specific tyrosine recombinase XerC — —
Rhizobium sp. OAE497 0.35 ABIE40_RS09300 ATP-dependent DNA helicase RecG 0.27 ABIE40_RS17950 tyrosine recombinase XerC low > 107
Azospirillum brasilense Sp245 0.35 AZOBR_RS09850 ATP-dependent DNA helicase RecG 0.27 AZOBR_RS03965 tyrosine recombinase XerC — —
Agrobacterium fabrum C58 0.34 Atu1780 ATP-dependent DNA helicase 0.27 Atu2628 site-specific recombinase — —
Synechococcus elongatus PCC 7942 0.34 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG 0.12 Synpcc7942_B2651 xerC integrase/recombinase — —
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_01504 ATP-dependent DNA helicase recG 0.25 CCNA_00349 integrase/recombinase, XerC-CodV family low > 67
Caulobacter crescentus NA1000 0.33 CCNA_01504 ATP-dependent DNA helicase recG 0.25 CCNA_00349 integrase/recombinase, XerC-CodV family low > 66
Phaeobacter inhibens DSM 17395 0.33 PGA1_c14380 ATP-dependent DNA helicase RecG 0.27 PGA1_c05760 putative tyrosine recombinase XerC 0.49 8
Dinoroseobacter shibae DFL-12 0.33 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.27 Dshi_5002 xerC hypothetical protein (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.24 Ga0059261_2764 Site-specific recombinase XerD 0.31 21
Pedobacter sp. GW460-11-11-14-LB5 0.32 CA265_RS22835 ATP-dependent DNA helicase RecG 0.29 CA265_RS02835 integrase 0.58 17
Rhodopseudomonas palustris CGA009 0.30 TX73_013795 ATP-dependent DNA helicase RecG 0.26 TX73_000945 tyrosine recombinase XerC low > 86
Bosea sp. OAE506 0.30 ABIE41_RS15815 ATP-dependent DNA helicase RecG 0.28 ABIE41_RS07870 tyrosine recombinase XerC 0.51 9
Brevundimonas sp. GW460-12-10-14-LB2 0.29 A4249_RS04765 ATP-dependent DNA helicase RecG 0.25 A4249_RS12210 tyrosine recombinase XerC low > 48
Rhodospirillum rubrum S1H 0.28 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) 0.28 Rru_A1220 Phage integrase (NCBI) — —
Mycobacterium tuberculosis H37Rv 0.25 Rv2973c Probable ATP-dependent DNA helicase RecG 0.33 Rv1701 Probable integrase/recombinase low > 58

Not shown: 10 genomes with orthologs for PP_5310 only; 0 genomes with orthologs for PP_5230 only