Conservation of cofitness between PP_1216 and PP_5230 in Pseudomonas putida KT2440

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1216 Holliday junction ATP-dependent DNA helicase RuvA 1.0 PP_5230 Tyrosine recombinase XerC 0.46 5
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.75 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.75 Psyr_0185 tyrosine recombinase XerC subunit — —
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_03585 ATP-dependent DNA helicase RuvA 0.78 AO353_09050 recombinase XerC 0.21 58
Pseudomonas sp. S08-1 0.82 OH686_19130 Holliday junction DNA helicase RuvA 0.74 OH686_13785 tyrosine recombinase XerC — —
Pseudomonas sp. RS175 0.82 PFR28_03413 Holliday junction ATP-dependent DNA helicase RuvA 0.78 PFR28_04378 Tyrosine recombinase XerC 0.41 3
Pseudomonas fluorescens GW456-L13 0.81 PfGW456L13_1852 Holliday junction DNA helicase RuvA 0.79 PfGW456L13_842 Tyrosine recombinase XerC 0.56 1
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_5536 Holliday junction DNA helicase RuvA 0.78 Pf6N2E2_4416 Tyrosine recombinase XerC 0.33 3
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_638 Holliday junction DNA helicase RuvA 0.78 Pf1N1B4_2171 Tyrosine recombinase XerC — —
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.75 PFLU_RS29280 tyrosine recombinase XerC 0.24 83
Pseudomonas simiae WCS417 0.81 PS417_22450 ATP-dependent DNA helicase RuvA 0.75 PS417_27595 recombinase XerC low > 88
Pseudomonas fluorescens SBW25 0.81 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.75 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_18020 ATP-dependent DNA helicase RuvA 0.78 AO356_12725 recombinase XerC 0.60 2
Pseudomonas stutzeri RCH2 0.80 Psest_1496 Holliday junction DNA helicase, RuvA subunit 0.75 Psest_3767 tyrosine recombinase XerC 0.29 5
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_09245 Holliday junction branch migration protein RuvA 0.41 CSW01_00650 tyrosine recombinase XerC 0.79 8
Shewanella sp. ANA-3 0.56 Shewana3_1956 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.42 Shewana3_0393 tyrosine recombinase XerC (RefSeq) low > 73
Shewanella oneidensis MR-1 0.56 SO2430 ruvA Holliday junction DNA helicase RuvA (NCBI ptt file) 0.42 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.30 50
Alteromonas macleodii MIT1002 0.55 MIT1002_01332 Holliday junction ATP-dependent DNA helicase RuvA 0.41 MIT1002_00157 Tyrosine recombinase XerC — —
Rahnella sp. WP5 0.54 EX31_RS11675 Holliday junction branch migration protein RuvA 0.47 EX31_RS15165 tyrosine recombinase XerC 0.69 1
Shewanella loihica PV-4 0.53 Shew_2076 Holliday junction DNA helicase RuvA (RefSeq) 0.43 Shew_0325 tyrosine recombinase XerC (RefSeq) — —
Enterobacter asburiae PDN3 0.53 EX28DRAFT_0695 Holliday junction DNA helicase subunit RuvA 0.45 EX28DRAFT_4480 tyrosine recombinase XerC — —
Escherichia coli Nissle 1917 0.53 ECOLIN_RS10365 Holliday junction branch migration protein RuvA 0.45 ECOLIN_RS21875 tyrosine recombinase XerC — —
Escherichia coli BW25113 0.53 b1861 ruvA Holliday junction DNA helicase motor protein (NCBI) 0.45 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.46 12
Escherichia fergusonii Becca 0.53 EFB2_02081 Holliday junction ATP-dependent DNA helicase RuvA 0.45 EFB2_04826 Tyrosine recombinase XerC — —
Escherichia coli BL21 0.53 ECD_01832 component of RuvABC resolvasome, regulatory subunit 0.45 ECD_03687 site-specific tyrosine recombinase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_01867 Holliday junction ATP-dependent DNA helicase RuvA 0.45 OHPLBJKB_04239 Tyrosine recombinase XerC — —
Enterobacter sp. TBS_079 0.52 MPMX20_02767 Holliday junction ATP-dependent DNA helicase RuvA 0.43 MPMX20_04465 Tyrosine recombinase XerC 0.45 2
Escherichia coli ECRC98 0.52 JDDGAC_00855 ruvA Holliday junction branch migration protein RuvA 0.45 JDDGAC_18045 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC102 0.52 NIAGMN_01780 ruvA Holliday junction branch migration protein RuvA 0.45 NIAGMN_12175 xerC tyrosine recombinase XerC — —
Escherichia coli ECOR38 0.52 HEPCGN_04690 ruvA Holliday junction branch migration protein RuvA 0.45 HEPCGN_13125 xerC tyrosine recombinase XerC — —
Escherichia coli ECOR27 0.52 NOLOHH_16725 ruvA Holliday junction branch migration protein RuvA 0.45 NOLOHH_06550 xerC tyrosine recombinase XerC — —
Shewanella amazonensis SB2B 0.52 Sama_1840 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.42 Sama_3247 integrase/recombinase XerC (RefSeq) — —
Escherichia coli ECRC62 0.52 BNILDI_15515 ruvA Holliday junction branch migration protein RuvA 0.45 BNILDI_04985 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC101 0.52 OKFHMN_26280 ruvA Holliday junction branch migration protein RuvA 0.45 OKFHMN_14420 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC101 0.52 MCAODC_19125 ruvA Holliday junction branch migration protein RuvA 0.45 MCAODC_04925 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC99 0.52 KEDOAH_01825 ruvA Holliday junction branch migration protein RuvA 0.45 KEDOAH_13730 xerC tyrosine recombinase XerC — —
Klebsiella michiganensis M5al 0.52 BWI76_RS18150 Holliday junction branch migration protein RuvA 0.46 BWI76_RS01210 tyrosine recombinase XerC — —
Kangiella aquimarina DSM 16071 0.52 B158DRAFT_1125 Holliday junction DNA helicase subunit RuvA 0.46 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.83 3
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF1640 Holliday junction DNA helicase RuvA 0.45 GFF239 Tyrosine recombinase XerC — —
Pantoea sp. MT58 0.51 IAI47_08445 Holliday junction branch migration protein RuvA 0.45 IAI47_18400 tyrosine recombinase XerC 0.24 18
Marinobacter adhaerens HP15 0.51 HP15_2041 Holliday junction ATP-dependent DNA helicase RuvA 0.45 HP15_250 site-specific tyrosine recombinase XerC — —
Erwinia tracheiphila SCR3 0.51 LU632_RS13415 ruvA Holliday junction branch migration protein RuvA 0.45 LU632_RS24135 xerC tyrosine recombinase XerC — —
Dickeya dadantii 3937 0.50 DDA3937_RS10080 Holliday junction branch migration protein RuvA 0.45 DDA3937_RS19890 tyrosine recombinase XerC — —
Pectobacterium carotovorum WPP14 0.50 HER17_RS11845 Holliday junction branch migration protein RuvA 0.45 HER17_RS01350 tyrosine recombinase XerC — —
Dickeya dianthicola ME23 0.48 DZA65_RS10525 Holliday junction branch migration protein RuvA 0.44 DZA65_RS21090 tyrosine recombinase XerC — —
Dickeya dianthicola 67-19 0.48 HGI48_RS10110 Holliday junction branch migration protein RuvA 0.44 HGI48_RS20045 tyrosine recombinase XerC — —
Serratia liquefaciens MT49 0.48 IAI46_14625 Holliday junction branch migration protein RuvA 0.46 IAI46_00725 tyrosine recombinase XerC — —
Acinetobacter radioresistens SK82 0.45 MPMX26_02185 Holliday junction ATP-dependent DNA helicase RuvA 0.34 MPMX26_02230 Tyrosine recombinase XerC — —
Lysobacter sp. OAE881 0.45 ABIE51_RS05045 Holliday junction branch migration protein RuvA 0.45 ABIE51_RS03035 tyrosine recombinase XerC 0.58 38
Dechlorosoma suillum PS 0.45 Dsui_0485 Holliday junction DNA helicase, RuvA subunit 0.43 Dsui_0651 tyrosine recombinase XerC — —
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS16615 holliday junction ATP-dependent DNA helicase RuvA 0.37 BPHYT_RS01655 tyrosine recombinase XerC — —
Variovorax sp. SCN45 0.44 GFF2073 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) 0.38 GFF4490 Site-specific tyrosine recombinase XerC low > 127
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS04910 Holliday junction branch migration protein RuvA 0.45 LRK54_RS08535 tyrosine recombinase XerC — —
Rhodanobacter denitrificans MT42 0.44 LRK55_RS04690 Holliday junction branch migration protein RuvA 0.45 LRK55_RS08300 tyrosine recombinase XerC — —
Castellaniella sp019104865 MT123 0.44 ABCV34_RS07980 Holliday junction branch migration protein RuvA 0.37 ABCV34_RS13455 tyrosine recombinase XerC low > 48
Variovorax sp. OAS795 0.44 ABID97_RS24920 Holliday junction branch migration protein RuvA 0.38 ABID97_RS06150 tyrosine recombinase XerC 0.43 60
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS26795 Holliday junction branch migration protein RuvA 0.37 QEN71_RS00355 tyrosine recombinase XerC — —
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS10840 Holliday junction branch migration protein RuvA 0.48 ABZR86_RS15025 tyrosine recombinase XerC 0.58 14
Paraburkholderia graminis OAS925 0.43 ABIE53_003494 Holliday junction DNA helicase RuvA 0.37 ABIE53_000426 integrase/recombinase XerC — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF1666 Holliday junction DNA helicase RuvA 0.40 GFF547 Tyrosine recombinase XerC low > 90
Ralstonia solanacearum GMI1000 0.42 RS_RS02490 Holliday junction branch migration protein RuvA 0.37 RS_RS00260 Tyrosine recombinase XerC 1 — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS11670 Holliday junction branch migration protein RuvA 0.37 RALBFv3_RS09675 tyrosine recombinase XerC — —
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_01840 ruvA Holliday junction branch migration protein RuvA 0.49 OKGIIK_15325 xerC tyrosine recombinase XerC — —
Ralstonia solanacearum PSI07 0.42 RPSI07_RS21550 Holliday junction branch migration protein RuvA 0.40 RPSI07_RS23690 tyrosine recombinase XerC — —
Ralstonia solanacearum UW163 0.42 UW163_RS01915 Holliday junction branch migration protein RuvA 0.37 UW163_RS03905 tyrosine recombinase XerC — —
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS02705 Holliday junction DNA helicase RuvA 0.39 RR42_RS00615 recombinase XerC 0.55 1
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_04254 Holliday junction DNA helicase subunit RuvA 0.37 H281DRAFT_02202 integrase/recombinase XerC — —
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1436.1 Holliday junction DNA helicase RuvA 0.48 Xcc-8004.847.1 Site-specific tyrosine recombinase — —
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS07625 Holliday junction branch migration protein RuvA 0.39 ABZR87_RS05065 tyrosine recombinase XerC 0.29 35
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS02090 Holliday junction DNA helicase RuvA 0.40 HSERO_RS21475 recombinase XerC low > 78
Acidovorax sp. GW101-3H11 0.40 Ac3H11_4683 Holliday junction DNA helicase RuvA 0.35 Ac3H11_1995 Tyrosine recombinase XerC — —
Synechococcus elongatus PCC 7942 0.34 Synpcc7942_2298 ruvA Holliday junction DNA helicase motor protein 0.12 Synpcc7942_B2651 xerC integrase/recombinase — —
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_0820 Holliday junction DNA helicase subunit RuvA 0.24 Ga0059261_2764 Site-specific recombinase XerD — —
Azospirillum brasilense Sp245 0.30 AZOBR_RS09045 Holliday junction DNA helicase RuvA 0.27 AZOBR_RS03965 tyrosine recombinase XerC — —
Magnetospirillum magneticum AMB-1 0.30 AMB_RS16255 Holliday junction branch migration protein RuvA 0.26 AMB_RS21485 tyrosine recombinase XerC — —
Rhodopseudomonas palustris CGA009 0.30 TX73_005655 Holliday junction branch migration protein RuvA 0.26 TX73_000945 tyrosine recombinase XerC — —
Bosea sp. OAE506 0.29 ABIE41_RS09475 Holliday junction branch migration protein RuvA 0.28 ABIE41_RS07870 tyrosine recombinase XerC — —
Rhodospirillum rubrum S1H 0.28 Rru_A1088 DNA recombination protein RuvA (NCBI) 0.28 Rru_A1220 Phage integrase (NCBI) — —
Agrobacterium fabrum C58 0.28 Atu3723 Holliday junction DNA helicase RuvA 0.27 Atu2628 site-specific recombinase — —
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS18995 Holliday junction branch migration protein RuvA 0.29 CA265_RS02835 integrase 0.40 19
Rhizobium sp. OAE497 0.27 ABIE40_RS15745 Holliday junction branch migration protein RuvA 0.27 ABIE40_RS17950 tyrosine recombinase XerC low > 107
Dinoroseobacter shibae DFL-12 0.27 Dshi_1104 Holliday junction DNA helicase RuvA (RefSeq) 0.27 Dshi_5002 xerC hypothetical protein (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS15860 Holliday junction branch migration protein RuvA 0.25 A4249_RS12210 tyrosine recombinase XerC — —
Sinorhizobium meliloti 1021 0.26 SMc03966 Holliday junction DNA helicase RuvA 0.26 SMc02489 site-specific tyrosine recombinase XerC — —
Mycobacterium tuberculosis H37Rv 0.25 Rv2593c Probable holliday junction DNA helicase RuvA 0.33 Rv1701 Probable integrase/recombinase — —
Phaeobacter inhibens DSM 17395 0.24 PGA1_c05860 holliday junction ATP-dependent DNA helicase RuvA 0.27 PGA1_c05760 putative tyrosine recombinase XerC 0.45 5
Caulobacter crescentus NA1000 Δfur 0.24 CCNA_03345 Holliday junction DNA helicase RuvA 0.25 CCNA_00349 integrase/recombinase, XerC-CodV family — —
Caulobacter crescentus NA1000 0.24 CCNA_03345 Holliday junction DNA helicase RuvA 0.25 CCNA_00349 integrase/recombinase, XerC-CodV family 0.40 17

Not shown: 14 genomes with orthologs for PP_1216 only; 0 genomes with orthologs for PP_5230 only