Conservation of cofitness between PP_0832 and PP_4900 in Pseudomonas putida KT2440

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1.0 PP_4900 epoxyqueuosine reductase 0.47 3
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.82 AO353_13115 epoxyqueuosine reductase 0.68 1
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_1227 Queuosine biosynthesis protein 0.82 Psyr_0566 4Fe-4S cluster binding protein 0.43 15
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.81 PfGW456L13_160 Epoxyqueuosine (oQ) reductase QueG 0.58 13
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_1227 Queuosine biosynthesis protein 0.82 Psyr_0566 4Fe-4S cluster binding protein low > 86
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_3005 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.82 Pf1N1B4_1418 Epoxyqueuosine (oQ) reductase QueG low > 87
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.82 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG low > 109
Pseudomonas fluorescens SBW25 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.82 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG 0.86 6
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.81 AO356_08685 epoxyqueuosine reductase 0.31 38
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.81 Pf6N2E2_3620 Epoxyqueuosine (oQ) reductase QueG 0.37 13
Pseudomonas sp. RS175 0.87 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.81 PFR28_05115 Epoxyqueuosine reductase 0.42 5
Pseudomonas simiae WCS417 0.87 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase 0.82 PS417_02460 epoxyqueuosine reductase low > 88
Pseudomonas sp. S08-1 0.86 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.82 OH686_09500 epoxyqueuosine reductase 0.68 42
Pseudomonas stutzeri RCH2 0.83 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.78 Psest_0677 iron-sulfur cluster binding protein, putative 0.31 21
Shewanella oneidensis MR-1 0.71 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) 0.54 SO3861 iron-sulfur cluster-binding protein (NCBI ptt file) 0.23 74
Serratia liquefaciens MT49 0.71 IAI46_04835 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.57 IAI46_01595 tRNA epoxyqueuosine(34) reductase QueG low > 86
Shewanella loihica PV-4 0.70 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) 0.54 Shew_2979 putative iron-sulfur cluster binding protein (RefSeq) — —
Enterobacter asburiae PDN3 0.70 EX28DRAFT_2566 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.56 EX28DRAFT_3363 epoxyqueuosine reductase low > 76
Rahnella sp. WP5 0.70 EX31_RS22090 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 EX31_RS08850 tRNA epoxyqueuosine(34) reductase QueG low > 89
Dickeya dianthicola ME23 0.70 DZA65_RS05850 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 DZA65_RS19710 tRNA epoxyqueuosine(34) reductase QueG low > 75
Shewanella sp. ANA-3 0.70 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.54 Shewana3_0745 putative iron-sulfur cluster binding protein (RefSeq) low > 73
Klebsiella michiganensis M5al 0.70 BWI76_RS06295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.56 BWI76_RS02505 tRNA epoxyqueuosine(34) reductase QueG 0.46 1
Dickeya dianthicola 67-19 0.70 HGI48_RS05525 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.57 HGI48_RS18575 tRNA epoxyqueuosine(34) reductase QueG low > 71
Escherichia coli ECRC98 0.70 JDDGAC_12165 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.57 JDDGAC_15925 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECRC62 0.70 BNILDI_22860 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.57 BNILDI_06940 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli BW25113 0.70 b0405 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) 0.57 b4166 yjeS predicted Fe-S electron transport protein (NCBI) 0.49 2
Dickeya dadantii 3937 0.70 DDA3937_RS05465 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.57 DDA3937_RS18645 tRNA epoxyqueuosine(34) reductase QueG low > 74
Escherichia coli ECRC99 0.70 KEDOAH_19455 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.57 KEDOAH_15870 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECRC101 0.70 MCAODC_27735 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 MCAODC_02800 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECRC102 0.70 NIAGMN_06565 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.57 NIAGMN_10135 queG tRNA epoxyqueuosine(34) reductase QueG — —
Pantoea sp. MT58 0.70 IAI47_14810 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.57 IAI47_02560 tRNA epoxyqueuosine(34) reductase QueG low > 76
Escherichia coli ECRC101 0.70 OKFHMN_08510 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.57 OKFHMN_12285 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_03271 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.57 OHPLBJKB_03876 Epoxyqueuosine reductase low > 73
Escherichia coli ECOR27 0.70 NOLOHH_01445 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.57 NOLOHH_04550 queG tRNA epoxyqueuosine(34) reductase QueG low > 57
Escherichia coli BL21 0.70 ECD_00353 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.57 ECD_04033 epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis low > 60
Escherichia fergusonii Becca 0.70 EFB2_03652 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.56 EFB2_04369 Epoxyqueuosine reductase low > 86
Escherichia coli ECOR38 0.69 HEPCGN_07150 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.57 HEPCGN_10515 queG tRNA epoxyqueuosine(34) reductase QueG low > 85
Enterobacter sp. TBS_079 0.69 MPMX20_00996 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.56 MPMX20_00447 Epoxyqueuosine reductase low > 85
Escherichia coli Nissle 1917 0.69 ECOLIN_RS02440 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 ECOLIN_RS24200 tRNA epoxyqueuosine(34) reductase QueG — —
Shewanella amazonensis SB2B 0.69 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.53 Sama_2625 iron-sulfur cluster-binding protein (RefSeq) 0.47 14
Pectobacterium carotovorum WPP14 0.69 HER17_RS15995 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.58 HER17_RS02555 tRNA epoxyqueuosine(34) reductase QueG low > 75
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.57 CSW01_01810 tRNA epoxyqueuosine(34) reductase QueG low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF4304 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.57 GFF819 Epoxyqueuosine (oQ) reductase QueG low > 78
Marinobacter adhaerens HP15 0.66 HP15_1478 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.67 HP15_2505 iron-sulfur cluster binding protein low > 73
Alteromonas macleodii MIT1002 0.62 MIT1002_02814 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.59 MIT1002_03794 Epoxyqueuosine reductase low > 70
Kangiella aquimarina DSM 16071 0.61 B158DRAFT_2515 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.48 B158DRAFT_0486 iron-sulfur cluster binding protein, putative low > 40
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS17395 S-adenosylmethionine tRNA ribosyltransferase 0.52 RR42_RS03405 epoxyqueuosine reductase low > 128
Ralstonia solanacearum GMI1000 0.55 RS_RS13570 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.53 RS_RS12740 tRNA epoxyqueuosine(34) reductase QueG 0.53 28
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS06170 S-adenosylmethionine tRNA ribosyltransferase 0.57 HSERO_RS04220 epoxyqueuosine reductase 0.26 28
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS01275 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.52 ABZR87_RS00775 tRNA epoxyqueuosine(34) reductase QueG low > 80
Ralstonia solanacearum PSI07 0.54 RPSI07_RS11620 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.53 RPSI07_RS12175 tRNA epoxyqueuosine(34) reductase QueG low > 81
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05680 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.53 RALBFv3_RS05120 tRNA epoxyqueuosine(34) reductase QueG low > 76
Ralstonia solanacearum UW163 0.54 UW163_RS07945 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.53 UW163_RS08505 tRNA epoxyqueuosine(34) reductase QueG — —
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.2167.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.59 Xcc-8004.2252.1 Epoxyqueuosine (oQ) reductase QueG low > 74
Rhodanobacter denitrificans FW104-10B01 0.54 LRK54_RS03135 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.62 LRK54_RS15130 tRNA epoxyqueuosine(34) reductase QueG low > 59
Rhodanobacter denitrificans MT42 0.54 LRK55_RS02885 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.62 LRK55_RS14845 tRNA epoxyqueuosine(34) reductase QueG low > 63
Acinetobacter radioresistens SK82 0.53 MPMX26_00441 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.52 MPMX26_01783 Epoxyqueuosine reductase low > 36
Castellaniella sp019104865 MT123 0.53 ABCV34_RS15370 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.52 ABCV34_RS13905 tRNA epoxyqueuosine(34) reductase QueG low > 48
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_10005 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.62 OKGIIK_03900 queG tRNA epoxyqueuosine(34) reductase QueG low > 52
Lysobacter sp. OAE881 0.51 ABIE51_RS15025 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.59 ABIE51_RS08045 tRNA epoxyqueuosine(34) reductase QueG low > 62
Variovorax sp. OAS795 0.51 ABID97_RS01590 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.55 ABID97_RS20285 tRNA epoxyqueuosine(34) reductase QueG low > 91
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS09545 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.65 ABZR86_RS00835 tRNA epoxyqueuosine(34) reductase QueG 0.76 3
Variovorax sp. SCN45 0.50 GFF5535 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) 0.51 GFF4805 Epoxyqueuosine reductase (EC 1.17.99.6) QueG low > 127
Dechlorosoma suillum PS 0.50 Dsui_3322 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.50 Dsui_3502 iron-sulfur cluster binding protein, putative low > 51
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS03405 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.53 BPHYT_RS15960 iron-sulfur cluster binding protein 0.35 38
Acidovorax sp. GW101-3H11 0.49 Ac3H11_778 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.55 Ac3H11_306 Epoxyqueuosine (oQ) reductase QueG low > 79
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS26635 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.52 QEN71_RS02745 tRNA epoxyqueuosine(34) reductase QueG low > 153
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_04671 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.52 H281DRAFT_04128 epoxyqueuosine reductase low > 103
Paraburkholderia graminis OAS925 0.48 ABIE53_000832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.54 ABIE53_003363 epoxyqueuosine reductase 0.45 50
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF2801 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.56 GFF5474 Epoxyqueuosine (oQ) reductase QueG low > 90
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS08775 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.34 A4249_RS11375 tRNA epoxyqueuosine(34) reductase QueG low > 48
Rhodospirillum rubrum S1H 0.40 Rru_A0281 Queuosine biosynthesis protein (NCBI) 0.39 Rru_A0279 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) low > 58
Rhizobium sp. OAE497 0.40 ABIE40_RS09430 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.34 ABIE40_RS01310 tRNA epoxyqueuosine(34) reductase QueG low > 107
Bosea sp. OAE506 0.40 ABIE41_RS17830 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.35 ABIE41_RS03135 tRNA epoxyqueuosine(34) reductase QueG low > 77
Agrobacterium fabrum C58 0.39 Atu1678 S-adenosylmethionine tRNA ribosyltransferase-isomerase 0.33 Atu0292 iron-sulfur cluster binding protein 0.32 16
Dinoroseobacter shibae DFL-12 0.39 Dshi_1180 Queuosine biosynthesis protein (RefSeq) 0.34 Dshi_3307 domain of unknown function DUF1730 (RefSeq) low > 64
Mucilaginibacter yixingensis YX-36 DSM 26809 0.39 ABZR88_RS03940 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.36 ABZR88_RS07975 tRNA epoxyqueuosine(34) reductase QueG — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.39 CA264_18125 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.34 CA264_19810 epoxyqueuosine reductase — —
Sinorhizobium meliloti 1021 0.39 SMc01207 S-adenosylmethionine--tRNA ribosyltransferase-isomerase 0.35 SMc00406 4Fe-4S ferredoxin 0.40 95
Echinicola vietnamensis KMM 6221, DSM 17526 0.38 Echvi_0042 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.35 Echvi_0824 iron-sulfur cluster binding protein, putative — —
Caulobacter crescentus NA1000 Δfur 0.38 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.35 CCNA_03753 iron-sulfur cluster-binding protein low > 67
Caulobacter crescentus NA1000 0.38 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.35 CCNA_03753 iron-sulfur cluster-binding protein 0.52 12
Phaeobacter inhibens DSM 17395 0.38 PGA1_c17420 S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA 0.33 PGA1_c34310 Uncharacterized Fe-S protein 0.28 60
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_2348 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.30 Synpcc7942_0530 4Fe-4S cluster binding low > 38
Pedobacter sp. GW460-11-11-14-LB5 0.37 CA265_RS07505 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.35 CA265_RS07695 tRNA epoxyqueuosine(34) reductase QueG — —
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_1011 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.33 Ga0059261_1058 epoxyqueuosine reductase 0.50 4
Magnetospirillum magneticum AMB-1 0.37 AMB_RS03085 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.34 AMB_RS03995 tRNA epoxyqueuosine(34) reductase QueG low > 64
Bacteroides thetaiotaomicron VPI-5482 0.36 BT3214 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) 0.27 BT3245 putative iron-sulfur cluster-binding protein (NCBI ptt file) — —
Parabacteroides merdae CL09T00C40 0.36 HMPREF1078_RS17105 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.29 HMPREF1078_RS06835 tRNA epoxyqueuosine(34) reductase QueG — —
Rhodopseudomonas palustris CGA009 0.35 TX73_013480 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.33 TX73_000215 tRNA epoxyqueuosine(34) reductase QueG 0.77 2

Not shown: 10 genomes with orthologs for PP_0832 only; 0 genomes with orthologs for PP_4900 only