Conservation of cofitness between PP_1985 and PP_4679 in Pseudomonas putida KT2440

86 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1985 3-isopropylmalate dehydratase large subunit 1.0 PP_4679 acetohydroxybutanoate synthase / acetolactate synthase 0.88 14
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.98 Pf1N1B4_2879 Acetolactate synthase small subunit (EC 2.2.1.6) 0.84 20
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.98 PfGW456L13_1539 Acetolactate synthase small subunit (EC 2.2.1.6) 0.90 23
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.98 Pf6N2E2_5176 Acetolactate synthase small subunit (EC 2.2.1.6) 0.79 17
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_20620 isopropylmalate isomerase 0.98 AO353_14500 acetolactate synthase 3 regulatory subunit 0.88 22
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_21400 isopropylmalate isomerase 0.98 AO356_16175 acetolactate synthase 3 regulatory subunit 0.95 7
Pseudomonas simiae WCS417 0.89 PS417_18600 isopropylmalate isomerase 0.98 PS417_23805 acetolactate synthase 3 regulatory subunit 0.90 7
Pseudomonas sp. RS175 0.89 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.98 PFR28_03698 Acetolactate synthase isozyme 3 small subunit 0.61 17
Pseudomonas fluorescens SBW25 0.89 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.98 PFLU_RS25645 acetolactate synthase small subunit 0.48 71
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.98 PFLU_RS25645 acetolactate synthase small subunit 0.50 28
Pseudomonas stutzeri RCH2 0.88 Psest_2591 3-isopropylmalate dehydratase, large subunit 0.97 Psest_1037 acetolactate synthase, small subunit 0.79 25
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_1983 3-isopropylmalate dehydratase, large subunit 1.00 Psyr_0847 acetolactate synthase, small subunit 0.93 10
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_1983 3-isopropylmalate dehydratase, large subunit 1.00 Psyr_0847 acetolactate synthase, small subunit 0.83 26
Pseudomonas sp. S08-1 0.86 OH686_04480 3-isopropylmalate dehydratase large subunit 0.98 OH686_08125 acetolactate synthase, small subunit 0.90 6
Marinobacter adhaerens HP15 0.78 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain 0.85 HP15_532 acetolactate synthase 3 regulatory subunit 0.74 33
Acinetobacter radioresistens SK82 0.72 MPMX26_00345 3-isopropylmalate dehydratase large subunit 0.78 MPMX26_00473 Acetolactate synthase isozyme 3 small subunit 0.94 12
Ralstonia sp. UNC404CL21Col 0.72 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.74 ABZR87_RS14950 acetolactate synthase small subunit 0.70 36
Ralstonia solanacearum PSI07 0.72 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit 0.73 RPSI07_RS14260 acetolactate synthase small subunit low > 81
Castellaniella sp019104865 MT123 0.72 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit 0.66 ABCV34_RS01215 acetolactate synthase small subunit low > 48
Cupriavidus basilensis FW507-4G11 0.72 RR42_RS14400 isopropylmalate isomerase 0.74 RR42_RS05440 acetolactate synthase
Ralstonia solanacearum GMI1000 0.72 RS_RS10000 3-isopropylmalate dehydratase large subunit 0.73 RS_RS10415 acetolactate synthase small subunit low > 80
Ralstonia solanacearum UW163 0.71 UW163_RS11105 3-isopropylmalate dehydratase large subunit 0.73 UW163_RS10680 acetolactate synthase small subunit
Ralstonia solanacearum IBSBF1503 0.71 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit 0.73 RALBFv3_RS03045 acetolactate synthase small subunit low > 76
Paraburkholderia bryophila 376MFSha3.1 0.71 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.73 H281DRAFT_04552 acetolactate synthase, small subunit low > 103
Paraburkholderia sabiae LMG 24235 0.71 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.73 QEN71_RS24220 acetolactate synthase small subunit low > 153
Burkholderia phytofirmans PsJN 0.71 BPHYT_RS33915 isopropylmalate isomerase 0.74 BPHYT_RS06550 acetolactate synthase low > 109
Herbaspirillum seropedicae SmR1 0.71 HSERO_RS16515 isopropylmalate isomerase 0.72 HSERO_RS08655 acetolactate synthase 0.75 40
Paraburkholderia graminis OAS925 0.71 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.74 ABIE53_001575 acetolactate synthase-1/3 small subunit low > 113
Variovorax sp. OAS795 0.69 ABID97_RS08465 3-isopropylmalate dehydratase large subunit 0.69 ABID97_RS14890 acetolactate synthase small subunit
Variovorax sp. SCN45 0.68 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.68 GFF1159 Acetolactate synthase small subunit (EC 2.2.1.6) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.67 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.71 GFF4277 Acetolactate synthase small subunit (EC 2.2.1.6) low > 90
Acidovorax sp. GW101-3H11 0.67 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.71 Ac3H11_526 Acetolactate synthase small subunit (EC 2.2.1.6) 0.72 49
Azospirillum sp. SherDot2 0.66 MPMX19_01998 3-isopropylmalate dehydratase large subunit 0.42 MPMX19_01775 Acetolactate synthase isozyme 3 small subunit
Azospirillum brasilense Sp245 0.66 AZOBR_RS03545 isopropylmalate isomerase 0.42 AZOBR_RS06565 acetolactate synthase low > 97
Rhodospirillum rubrum S1H 0.66 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) 0.42 Rru_A0468 Acetolactate synthase, small subunit (NCBI) 0.87 23
Dechlorosoma suillum PS 0.66 Dsui_3201 3-isopropylmalate dehydratase, large subunit 0.66 Dsui_3528 acetolactate synthase, small subunit
Sinorhizobium meliloti 1021 0.65 SMc03823 isopropylmalate isomerase large subunit 0.40 SMc01430 acetolactate synthase 3 regulatory subunit 0.85 59
Agrobacterium fabrum C58 0.64 Atu2709 3-isopropylmalate dehydratase, large subunit 0.40 Atu2035 acetolactate synthase, small subunit low > 89
Rhizobium sp. OAE497 0.63 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.40 ABIE40_RS11490 acetolactate synthase small subunit low > 107
Bosea sp. OAE506 0.63 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit 0.38 ABIE41_RS12905 acetolactate synthase small subunit
Magnetospirillum magneticum AMB-1 0.63 AMB_RS20560 3-isopropylmalate dehydratase large subunit 0.43 AMB_RS17745 acetolactate synthase small subunit
Rhodopseudomonas palustris CGA009 0.62 TX73_001245 3-isopropylmalate dehydratase large subunit 0.41 TX73_010470 acetolactate synthase small subunit
Rahnella sp. WP5 0.62 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.70 EX31_RS03660 acetolactate synthase small subunit low > 89
Pectobacterium carotovorum WPP14 0.61 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.70 HER17_RS03100 acetolactate synthase small subunit low > 75
Caulobacter crescentus NA1000 Δfur 0.61 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.38 CCNA_02186 acetolactate synthase small subunit low > 67
Enterobacter asburiae PDN3 0.61 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.67 EX28DRAFT_3674 acetolactate synthase, small subunit (EC 2.2.1.6) low > 76
Caulobacter crescentus NA1000 0.61 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.38 CCNA_02186 acetolactate synthase small subunit low > 66
Pantoea sp. MT58 0.61 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.67 IAI47_15985 acetolactate synthase small subunit low > 76
Escherichia coli ECOR38 0.61 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 0.68 HEPCGN_08675 ilvN acetolactate synthase small subunit low > 85
Escherichia coli ECRC102 0.61 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1 0.68 NIAGMN_08545 ilvN acetolactate synthase small subunit
Escherichia coli BL21 0.61 ECD_00074 3-isopropylmalate dehydratase large subunit 0.68 ECD_00080 acetolactate synthase 3, small subunit, valine-sensitive low > 60
Escherichia coli ECRC98 0.61 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 0.68 JDDGAC_14290 ilvN acetolactate synthase small subunit
Escherichia coli ECRC101 0.61 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 0.68 OKFHMN_10695 ilvN acetolactate synthase small subunit
Escherichia coli ECRC99 0.61 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1 0.68 KEDOAH_17460 ilvN acetolactate synthase small subunit
Escherichia coli ECRC62 0.61 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 0.69 BNILDI_08570 ilvN acetolactate synthase small subunit
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.68 GFF160 Acetolactate synthase small subunit (EC 2.2.1.6) low > 78
Escherichia coli Nissle 1917 0.61 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit 0.69 ECOLIN_RS00420 acetolactate synthase small subunit low > 52
Escherichia coli BW25113 0.61 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.68 b0078 ilvH acetolactate synthase small subunit (NCBI) low > 76
Escherichia coli ECRC101 0.61 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 0.68 MCAODC_01210 ilvN acetolactate synthase small subunit
Escherichia coli ECOR27 0.61 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 0.69 NOLOHH_03040 ilvN acetolactate synthase small subunit low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit 0.69 OHPLBJKB_03580 Acetolactate synthase isozyme 3 small subunit low > 73
Enterobacter sp. TBS_079 0.61 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.68 MPMX20_00772 Acetolactate synthase isozyme 3 small subunit low > 85
Klebsiella michiganensis M5al 0.60 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.68 BWI76_RS04700 acetolactate synthase small subunit low > 92
Escherichia fergusonii Becca 0.60 EFB2_03973 3-isopropylmalate dehydratase large subunit 0.69 EFB2_03968 Acetolactate synthase isozyme 3 small subunit low > 86
Dickeya dadantii 3937 0.60 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.68 DDA3937_RS18100 acetolactate synthase small subunit low > 74
Dickeya dianthicola 67-19 0.60 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.68 HGI48_RS18035 acetolactate synthase small subunit low > 71
Dickeya dianthicola ME23 0.60 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.68 DZA65_RS19180 acetolactate synthase small subunit low > 75
Shewanella loihica PV-4 0.59 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.69 Shew_1775 acetolactate synthase 3 regulatory subunit (RefSeq) low > 60
Shewanella oneidensis MR-1 0.59 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.66 SO2278 ilvH acetolactate synthase III, small subunit (NCBI ptt file)
Phaeobacter inhibens DSM 17395 0.59 PGA1_c29780 3-isopropylmalate dehydratase large subunit 0.41 PGA1_c20220 acetolactate synthase isozyme 3 small subunit low > 62
Shewanella sp. ANA-3 0.59 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.66 Shewana3_2270 ilvH acetolactate synthase 3 regulatory subunit (RefSeq) low > 73
Dinoroseobacter shibae DFL-12 0.59 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq) 0.38 Dshi_1781 acetolactate synthase, small subunit (RefSeq) low > 64
Serratia liquefaciens MT49 0.59 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.70 IAI46_03380 acetolactate synthase small subunit low > 86
Shewanella amazonensis SB2B 0.59 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 0.66 Sama_2019 ilvH acetolactate synthase 3 regulatory subunit (RefSeq) low > 62
Sphingomonas koreensis DSMZ 15582 0.58 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.45 Ga0059261_0067 acetolactate synthase, small subunit (EC 2.2.1.6) 0.99 14
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_12605 3-isopropylmalate dehydratase large subunit 0.69 CSW01_12560 acetolactate synthase small subunit low > 62
Alteromonas macleodii MIT1002 0.58 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.63 MIT1002_00504 Acetolactate synthase isozyme 3 small subunit 0.99 8
Mycobacterium tuberculosis H37Rv 0.56 Rv2988c Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI) 0.39 Rv3002c Probable acetolactate synthase (small subunit) IlvN (acetohydroxy-acid synthase) (AHAS) (ALS)
Erwinia tracheiphila SCR3 0.56 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.67 LU632_RS02890 ilvN acetolactate synthase small subunit low > 74
Bifidobacterium breve UCC2003 0.54 BBR_RS19630 3-isopropylmalate dehydratase large subunit 0.42 BBR_RS12345 acetolactate synthase small subunit low > 34
Parabacteroides merdae CL09T00C40 0.50 HMPREF1078_RS16660 3-isopropylmalate dehydratase large subunit 0.17 HMPREF1078_RS16685 acetolactate synthase small subunit low > 61
Echinicola vietnamensis KMM 6221, DSM 17526 0.49 Echvi_2059 3-isopropylmalate dehydratase, large subunit 0.19 Echvi_2057 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) 0.72 13
Synechococcus elongatus PCC 7942 0.46 Synpcc7942_1898 leuC isopropylmalate isomerase large subunit 0.40 Synpcc7942_2434 ilvH acetolactate synthase 3 regulatory subunit
Methanococcus maripaludis JJ 0.22 MMJJ_RS06750 homoaconitase large subunit 0.45 MMJJ_RS01645 acetolactate synthase small subunit low > 28
Methanococcus maripaludis S2 0.22 MMP_RS07610 homoaconitase large subunit 0.45 MMP_RS03420 acetolactate synthase small subunit
Desulfovibrio vulgaris Miyazaki F 0.20 DvMF_1792 3-isopropylmalate dehydratase large subunit (RefSeq) 0.46 DvMF_0154 ilvH acetolactate synthase 3 regulatory subunit (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU2982 leuC 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (from data) 0.45 DVU1377 ilvN-2 acetolactate synthase, small subunit (TIGR) low > 55

Not shown: 16 genomes with orthologs for PP_1985 only; 0 genomes with orthologs for PP_4679 only