Conservation of cofitness between PP_5217 and PP_1626 in Pseudomonas putida KT2440

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5217 Polyphosphate kinase 1.0 PP_1626 DNA mismatch repair protein MutS 0.40 4
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_4453 Polyphosphate kinase (EC 2.7.4.1) 0.90 Pf6N2E2_3035 DNA mismatch repair protein MutS low > 103
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_0293 Polyphosphate kinase 0.89 Psyr_1376 DNA mismatch repair protein MutS low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_0293 Polyphosphate kinase 0.89 Psyr_1376 DNA mismatch repair protein MutS low > 86
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_2208 Polyphosphate kinase (EC 2.7.4.1) 0.90 Pf1N1B4_3117 DNA mismatch repair protein MutS low > 87
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_874 Polyphosphate kinase (EC 2.7.4.1) 0.89 PfGW456L13_4672 DNA mismatch repair protein MutS low > 87
Pseudomonas fluorescens FW300-N2C3 0.90 AO356_12895 polyphosphate kinase 0.90 AO356_05875 DNA mismatch repair protein MutS low > 104
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_08885 polyphosphate kinase 0.91 AO353_16625 DNA mismatch repair protein MutS low > 101
Pseudomonas sp. RS175 0.90 PFR28_04345 Polyphosphate kinase 0.90 PFR28_00429 DNA mismatch repair protein MutS low > 88
Pseudomonas fluorescens SBW25 0.90 PFLU_RS29095 polyphosphate kinase 1 0.90 PFLU_RS05765 DNA mismatch repair protein MutS low > 109
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS29095 polyphosphate kinase 1 0.90 PFLU_RS05765 DNA mismatch repair protein MutS low > 109
Pseudomonas simiae WCS417 0.89 PS417_27435 polyphosphate kinase 0.90 PS417_05680 DNA mismatch repair protein MutS low > 88
Pseudomonas stutzeri RCH2 0.85 Psest_3732 polyphosphate kinase 1 0.86 Psest_2875 DNA mismatch repair protein MutS low > 67
Pseudomonas sp. S08-1 0.84 OH686_13995 polyphosphate kinase 1 0.85 OH686_18195 DNA mismatch repair protein MutS low > 80
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS07490 polyphosphate kinase 1 0.53 ABZR86_RS00630 DNA mismatch repair protein MutS low > 74
Rhodanobacter denitrificans FW104-10B01 0.68 LRK54_RS16000 polyphosphate kinase 1 0.52 LRK54_RS14935 DNA mismatch repair protein MutS low > 59
Rhodanobacter denitrificans MT42 0.68 LRK55_RS15755 polyphosphate kinase 1 0.53 LRK55_RS14650 DNA mismatch repair protein MutS low > 63
Rhodanobacter sp. FW510-T8 0.68 OKGIIK_08995 ppk1 RNA degradosome polyphosphate kinase 0.53 OKGIIK_03705 mutS DNA mismatch repair protein MutS low > 52
Marinobacter adhaerens HP15 0.59 HP15_3334 polyphosphate kinase 0.64 HP15_1047 DNA mismatch repair protein MutS low > 73
Acinetobacter radioresistens SK82 0.57 MPMX26_02335 Polyphosphate kinase 0.47 MPMX26_01954 DNA mismatch repair protein MutS low > 36
Dechlorosoma suillum PS 0.51 Dsui_2814 polyphosphate kinase 1 0.50 Dsui_2244 DNA mismatch repair protein MutS low > 51
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_2312 polyphosphate kinase 1 0.50 B158DRAFT_1529 DNA mismatch repair protein MutS low > 40
Lysobacter sp. OAE881 0.49 ABIE51_RS14230 polyphosphate kinase 1 0.53 ABIE51_RS07785 DNA mismatch repair protein MutS low > 62
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS31480 polyphosphate kinase 0.47 RR42_RS06285 DNA mismatch repair protein MutS low > 128
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.4064.1 Polyphosphate kinase (EC 2.7.4.1) 0.50 Xcc-8004.3760.1 DNA mismatch repair protein MutS low > 74
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS06305 polyphosphate kinase 0.48 HSERO_RS16360 DNA mismatch repair protein MutS low > 78
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS14065 polyphosphate kinase 1 0.48 ABZR87_RS10580 DNA mismatch repair protein MutS low > 80
Ralstonia solanacearum PSI07 0.47 RPSI07_RS15330 polyphosphate kinase 1 0.47 RPSI07_RS18440 DNA mismatch repair protein MutS low > 81
Paraburkholderia graminis OAS925 0.47 ABIE53_002988 polyphosphate kinase 0.47 ABIE53_002719 DNA mismatch repair protein MutS low > 113
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS02115 polyphosphate kinase 1 0.47 RALBFv3_RS14920 DNA mismatch repair protein MutS low > 76
Ralstonia solanacearum UW163 0.46 UW163_RS15425 polyphosphate kinase 1 0.47 UW163_RS12390 DNA mismatch repair protein MutS — —
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS14110 polyphosphate kinase 0.47 BPHYT_RS12475 DNA mismatch repair protein MutS low > 109
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04418 polyphosphate kinase 0.48 H281DRAFT_00537 DNA mismatch repair protein MutS low > 103
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS04860 polyphosphate kinase 1 0.46 QEN71_RS06085 DNA mismatch repair protein MutS low > 153
Ralstonia solanacearum GMI1000 0.46 RS_RS07705 polyphosphate kinase 1 0.47 RS_RS05735 DNA mismatch repair protein MutS low > 80
Castellaniella sp019104865 MT123 0.45 ABCV34_RS15580 polyphosphate kinase 1 0.44 ABCV34_RS00270 DNA mismatch repair protein MutS low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF4226 Polyphosphate kinase (EC 2.7.4.1) 0.41 GFF3599 DNA mismatch repair protein MutS 0.58 62
Acidovorax sp. GW101-3H11 0.41 Ac3H11_452 Polyphosphate kinase (EC 2.7.4.1) 0.43 Ac3H11_3641 DNA mismatch repair protein MutS low > 79
Variovorax sp. OAS795 0.40 ABID97_RS14575 polyphosphate kinase 1 0.41 ABID97_RS20815 DNA mismatch repair protein MutS low > 91
Variovorax sp. SCN45 0.40 GFF1089 Polyphosphate kinase (EC 2.7.4.1) 0.41 GFF6634 DNA mismatch repair protein MutS low > 127
Synechococcus elongatus PCC 7942 0.36 Synpcc7942_1566 ppk polyphosphate kinase 0.35 Synpcc7942_2247 mutS DNA mismatch repair protein low > 38
Rhodospirillum rubrum S1H 0.35 Rru_A2161 Polyphosphate kinase (NCBI) 0.32 Rru_A3541 MutS 1 protein (NCBI) low > 58
Bosea sp. OAE506 0.35 ABIE41_RS16125 RNA degradosome polyphosphate kinase 0.32 ABIE41_RS03650 DNA mismatch repair protein MutS low > 77
Magnetospirillum magneticum AMB-1 0.34 AMB_RS14295 RNA degradosome polyphosphate kinase 0.32 AMB_RS01455 DNA mismatch repair protein MutS low > 64
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_01782 polyphosphate kinase 1 0.29 CCNA_00012 DNA mismatch repair protein MutS low > 67
Caulobacter crescentus NA1000 0.34 CCNA_01782 polyphosphate kinase 1 0.29 CCNA_00012 DNA mismatch repair protein MutS low > 66
Sinorhizobium meliloti 1021 0.34 SMc00618 polyphosphate kinase 0.31 SMc01125 DNA mismatch repair protein MutS low > 103
Dinoroseobacter shibae DFL-12 0.33 Dshi_0740 Polyphosphate kinase (RefSeq) 0.34 Dshi_3466 DNA mismatch repair protein MutS (RefSeq) low > 64
Rhodopseudomonas palustris CGA009 0.33 TX73_015770 RNA degradosome polyphosphate kinase 0.33 TX73_002655 DNA mismatch repair protein MutS low > 86
Azospirillum brasilense Sp245 0.33 AZOBR_RS16235 polyphosphate kinase 0.31 AZOBR_RS02125 DNA mismatch repair protein MutS low > 97
Rhizobium sp. OAE497 0.33 ABIE40_RS06575 RNA degradosome polyphosphate kinase 0.33 ABIE40_RS01775 DNA mismatch repair protein MutS low > 107
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_0225 polyphosphate kinase 1 0.32 Ga0059261_3784 DNA mismatch repair protein MutS 0.62 39
Azospirillum sp. SherDot2 0.33 MPMX19_01149 Polyphosphate kinase 0.31 MPMX19_00908 DNA mismatch repair protein MutS low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS08195 RNA degradosome polyphosphate kinase 0.29 A4249_RS12110 DNA mismatch repair protein MutS — —
Agrobacterium fabrum C58 0.32 Atu1144 polyphosphate kinase 0.32 Atu0345 DNA mismatch repair protein, MutS family — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.29 CA264_11200 RNA degradosome polyphosphate kinase 0.34 CA264_18545 DNA mismatch repair protein MutS low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.29 Echvi_2996 polyphosphate kinase 1 0.34 Echvi_0960 DNA mismatch repair protein MutS low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS04845 polyphosphate kinase 1 0.35 ABZR88_RS10580 DNA mismatch repair protein MutS low > 71
Escherichia coli BL21 0.27 ECD_02393 polyphosphate kinase, component of RNA degradosome 0.56 ECD_02583 methyl-directed mismatch repair protein low > 60
Escherichia coli ECRC101 0.27 MCAODC_12330 ppk1 polyphosphate kinase 1 0.56 MCAODC_11050 mutS DNA mismatch repair protein MutS — —
Escherichia coli ECRC98 0.27 JDDGAC_25745 ppk1 polyphosphate kinase 1 0.56 JDDGAC_24190 mutS DNA mismatch repair protein MutS — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_01225 Polyphosphate kinase 0.56 OHPLBJKB_01000 DNA mismatch repair protein MutS low > 73
Escherichia coli ECRC102 0.27 NIAGMN_19570 ppk1 polyphosphate kinase 1 0.56 NIAGMN_18295 mutS DNA mismatch repair protein MutS — —
Escherichia coli ECRC62 0.27 BNILDI_12260 ppk1 polyphosphate kinase 1 0.56 BNILDI_10920 mutS DNA mismatch repair protein MutS — —
Escherichia coli Nissle 1917 0.27 ECOLIN_RS14200 polyphosphate kinase 1 0.56 ECOLIN_RS15275 DNA mismatch repair protein MutS low > 52
Escherichia coli ECRC99 0.27 KEDOAH_06420 ppk1 polyphosphate kinase 1 0.56 KEDOAH_07610 mutS DNA mismatch repair protein MutS — —
Escherichia coli ECOR27 0.27 NOLOHH_13450 ppk1 polyphosphate kinase 1 0.56 NOLOHH_12370 mutS DNA mismatch repair protein MutS — —
Escherichia coli ECRC101 0.27 OKFHMN_21800 ppk1 polyphosphate kinase 1 0.56 OKFHMN_20525 mutS DNA mismatch repair protein MutS — —
Escherichia coli BW25113 0.27 b2501 ppk polyphosphate kinase (NCBI) 0.56 b2733 mutS DNA mismatch repair protein (NCBI) low > 76
Escherichia coli ECOR38 0.27 HEPCGN_20965 ppk1 polyphosphate kinase 1 0.56 HEPCGN_19705 mutS DNA mismatch repair protein MutS low > 85
Escherichia fergusonii Becca 0.27 EFB2_01397 Polyphosphate kinase 0.56 EFB2_01179 DNA mismatch repair protein MutS low > 86
Pectobacterium carotovorum WPP14 0.27 HER17_RS06425 polyphosphate kinase 1 0.57 HER17_RS16220 DNA mismatch repair protein MutS low > 75
Dickeya dadantii 3937 0.27 DDA3937_RS15150 polyphosphate kinase 1 0.56 DDA3937_RS05230 DNA mismatch repair protein MutS low > 74
Klebsiella michiganensis M5al 0.27 BWI76_RS20995 RNA degradosome polyphosphate kinase 0.56 BWI76_RS22600 DNA mismatch repair protein MutS low > 92
Dickeya dianthicola 67-19 0.27 HGI48_RS15225 polyphosphate kinase 1 0.56 HGI48_RS05230 DNA mismatch repair protein MutS low > 71
Dickeya dianthicola ME23 0.27 DZA65_RS16045 polyphosphate kinase 1 0.56 DZA65_RS05570 DNA mismatch repair protein MutS low > 75
Pedobacter sp. GW460-11-11-14-LB5 0.27 CA265_RS09830 polyphosphate kinase 1 0.33 CA265_RS08220 DNA mismatch repair protein MutS low > 88
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF2167 Polyphosphate kinase (EC 2.7.4.1) 0.57 GFF4773 DNA mismatch repair protein MutS low > 78
Enterobacter sp. TBS_079 0.26 MPMX20_03356 Polyphosphate kinase 0.57 MPMX20_03619 DNA mismatch repair protein MutS low > 85
Serratia liquefaciens MT49 0.26 IAI46_18915 polyphosphate kinase 1 0.57 IAI46_03800 DNA mismatch repair protein MutS low > 86
Rahnella sp. WP5 0.26 EX31_RS22680 polyphosphate kinase 1 0.57 EX31_RS07820 DNA mismatch repair protein MutS low > 89
Enterobacter asburiae PDN3 0.26 EX28DRAFT_0166 polyphosphate kinase 1 0.57 EX28DRAFT_2829 DNA mismatch repair protein MutS low > 76
Pantoea sp. MT58 0.26 IAI47_05155 polyphosphate kinase 1 0.56 IAI47_04240 DNA mismatch repair protein MutS low > 76
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_03780 polyphosphate kinase 1 0.57 CSW01_02840 DNA mismatch repair protein MutS low > 62
Parabacteroides merdae CL09T00C40 0.26 HMPREF1078_RS16770 RNA degradosome polyphosphate kinase 0.34 HMPREF1078_RS06455 DNA mismatch repair protein MutS low > 61
Alteromonas macleodii MIT1002 0.26 MIT1002_00872 Polyphosphate kinase 0.56 MIT1002_00953 DNA mismatch repair protein MutS low > 70
Erwinia tracheiphila SCR3 0.25 LU632_RS08260 ppk1 polyphosphate kinase 1 0.56 LU632_RS06485 mutS DNA mismatch repair protein MutS low > 74
Bacteroides ovatus ATCC 8483 0.25 BACOVA_03769 polyphosphate kinase 1 0.33 BACOVA_02824 DNA mismatch repair protein MutS low > 94
Bacteroides thetaiotaomicron VPI-5482 0.25 BT0541 Polyphosphate kinase (NCBI ptt file) 0.33 BT3121 DNA mismatch repair protein mutS (NCBI ptt file) low > 81
Shewanella amazonensis SB2B 0.25 Sama_2011 polyphosphate kinase (RefSeq) 0.54 Sama_1045 DNA mismatch repair protein MutS (RefSeq) low > 62
Shewanella sp. ANA-3 0.25 Shewana3_2417 polyphosphate kinase (RefSeq) 0.57 Shewana3_1125 DNA mismatch repair protein MutS (RefSeq) low > 73
Shewanella loihica PV-4 0.25 Shew_3079 polyphosphate kinase (RefSeq) 0.55 Shew_1214 DNA mismatch repair protein (RefSeq) low > 60
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS08035 RNA degradosome polyphosphate kinase 0.33 HMPREF1181_RS01980 DNA mismatch repair protein MutS low > 56
Phocaeicola dorei CL03T12C01 0.24 ABI39_RS14955 RNA degradosome polyphosphate kinase 0.33 ABI39_RS05500 DNA mismatch repair protein MutS low > 72
Phocaeicola vulgatus CL09T03C04 0.23 HMPREF1058_RS02340 RNA degradosome polyphosphate kinase 0.33 HMPREF1058_RS11435 DNA mismatch repair protein MutS low > 67

Not shown: 2 genomes with orthologs for PP_5217 only; 5 genomes with orthologs for PP_1626 only