Conservation of cofitness between PP_1215 and PP_1468 in Pseudomonas putida KT2440

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1215 Crossover junction endodeoxyribonuclease RuvC 1.0 PP_1468 Tyrosine recombinase XerD 0.36 10
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_1408 Holliday junction endonuclease RuvC 0.87 Psyr_1286 tyrosine recombinase XerD subunit low > 86
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_1408 Holliday junction endonuclease RuvC 0.87 Psyr_1286 tyrosine recombinase XerD subunit 0.37 66
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_639 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.90 Pf1N1B4_3011 Tyrosine recombinase XerD — —
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_03590 crossover junction endodeoxyribonuclease RuvC 0.90 AO353_04365 recombinase XerD 0.36 9
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_18015 crossover junction endodeoxyribonuclease RuvC 0.90 AO356_06385 recombinase XerD — —
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_5535 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.90 Pf6N2E2_3145 Tyrosine recombinase XerD — —
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_1851 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.91 PfGW456L13_1721 Tyrosine recombinase XerD 0.32 42
Pseudomonas sp. RS175 0.87 PFR28_03414 Crossover junction endodeoxyribonuclease RuvC 0.90 PFR28_00331 Tyrosine recombinase XerD 0.44 3
Pseudomonas fluorescens SBW25 0.86 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC 0.90 PFLU_RS24560 site-specific tyrosine recombinase XerD low > 109
Pseudomonas simiae WCS417 0.86 PS417_22455 crossover junction endodeoxyribonuclease RuvC 0.90 PS417_22895 tyrosine recombinase XerD — —
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC 0.90 PFLU_RS24560 site-specific tyrosine recombinase XerD low > 109
Pseudomonas stutzeri RCH2 0.86 Psest_1495 crossover junction endodeoxyribonuclease RuvC 0.81 Psest_3129 tyrosine recombinase XerD — —
Pseudomonas sp. S08-1 0.85 OH686_19125 crossover junction endodeoxyribonuclease RuvC 0.82 OH686_17750 tyrosine recombinase XerD 0.49 46
Vibrio cholerae E7946 ATCC 55056 0.56 CSW01_09250 crossover junction endodeoxyribonuclease RuvC 0.59 CSW01_12250 site-specific tyrosine recombinase XerD low > 62
Shewanella loihica PV-4 0.54 Shew_2077 crossover junction endodeoxyribonuclease RuvC (RefSeq) 0.60 Shew_0770 tyrosine recombinase XerD (RefSeq) 0.54 5
Marinobacter adhaerens HP15 0.53 HP15_2042 crossover junction endodeoxyribonuclease RuvC 0.61 HP15_762 site-specific tyrosine recombinase XerD — —
Shewanella sp. ANA-3 0.52 Shewana3_1955 ruvC Holliday junction resolvase (RefSeq) 0.58 Shewana3_3331 tyrosine recombinase XerD (RefSeq) — —
Shewanella oneidensis MR-1 0.52 SO2431 ruvC crossover junction endodeoxyribonuclease RuvC (NCBI ptt file) 0.59 SO0950 xerD integrase/recombinase XerD (NCBI ptt file) 0.37 10
Shewanella amazonensis SB2B 0.52 Sama_1841 ruvC Holliday junction resolvase (RefSeq) 0.54 Sama_2739 integrase/recombinase XerD (RefSeq) — —
Alteromonas macleodii MIT1002 0.51 MIT1002_01331 Crossover junction endodeoxyribonuclease RuvC 0.55 MIT1002_00786 Tyrosine recombinase XerD — —
Dickeya dianthicola 67-19 0.50 HGI48_RS10100 crossover junction endodeoxyribonuclease RuvC 0.60 HGI48_RS03440 site-specific tyrosine recombinase XerD — —
Dickeya dianthicola ME23 0.50 DZA65_RS10515 crossover junction endodeoxyribonuclease RuvC 0.60 DZA65_RS03485 site-specific tyrosine recombinase XerD — —
Dickeya dadantii 3937 0.50 DDA3937_RS10070 crossover junction endodeoxyribonuclease RuvC 0.61 DDA3937_RS03300 site-specific tyrosine recombinase XerD — —
Serratia liquefaciens MT49 0.50 IAI46_14630 crossover junction endodeoxyribonuclease RuvC 0.61 IAI46_20730 site-specific tyrosine recombinase XerD — —
Pantoea sp. MT58 0.49 IAI47_08440 crossover junction endodeoxyribonuclease RuvC 0.60 IAI47_03820 site-specific tyrosine recombinase XerD 0.30 18
Enterobacter sp. TBS_079 0.49 MPMX20_02768 Crossover junction endodeoxyribonuclease RuvC 0.60 MPMX20_03753 Tyrosine recombinase XerD 0.42 2
Pectobacterium carotovorum WPP14 0.49 HER17_RS11850 crossover junction endodeoxyribonuclease RuvC 0.60 HER17_RS17890 site-specific tyrosine recombinase XerD 0.64 7
Acinetobacter radioresistens SK82 0.48 MPMX26_01780 Crossover junction endodeoxyribonuclease RuvC 0.50 MPMX26_00169 Tyrosine recombinase XerD — —
Rahnella sp. WP5 0.48 EX31_RS11680 crossover junction endodeoxyribonuclease RuvC 0.58 EX31_RS13480 site-specific tyrosine recombinase XerD — —
Enterobacter asburiae PDN3 0.48 EX28DRAFT_0694 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.60 EX28DRAFT_2945 tyrosine recombinase XerD — —
Erwinia tracheiphila SCR3 0.48 LU632_RS13420 ruvC crossover junction endodeoxyribonuclease RuvC 0.59 LU632_RS05975 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECOR27 0.48 NOLOHH_16710 ruvC crossover junction endodeoxyribonuclease RuvC 0.60 NOLOHH_11495 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC99 0.48 KEDOAH_01840 ruvC crossover junction endodeoxyribonuclease RuvC 0.60 KEDOAH_08570 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC102 0.48 NIAGMN_01795 ruvC crossover junction endodeoxyribonuclease RuvC 0.60 NIAGMN_17335 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli BL21 0.48 ECD_01834 component of RuvABC resolvasome, endonuclease 0.60 ECD_02726 site-specific tyrosine recombinase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_01865 Crossover junction endodeoxyribonuclease RuvC 0.60 OHPLBJKB_00821 Tyrosine recombinase XerD — —
Escherichia coli ECRC101 0.48 OKFHMN_26265 ruvC crossover junction endodeoxyribonuclease RuvC 0.60 OKFHMN_19570 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli BW25113 0.48 b1863 ruvC Holliday junction resolvase (NCBI) 0.60 b2894 xerD site-specific tyrosine recombinase XerD (NCBI) 0.47 19
Escherichia coli ECOR38 0.48 HEPCGN_04675 ruvC crossover junction endodeoxyribonuclease RuvC 0.60 HEPCGN_18860 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC62 0.48 BNILDI_15500 ruvC crossover junction endodeoxyribonuclease RuvC 0.60 BNILDI_10025 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC98 0.48 JDDGAC_00840 ruvC crossover junction endodeoxyribonuclease RuvC 0.60 JDDGAC_23210 xerD site-specific tyrosine recombinase XerD — —
Klebsiella michiganensis M5al 0.48 BWI76_RS18155 crossover junction endodeoxyribonuclease RuvC 0.60 BWI76_RS23815 site-specific tyrosine recombinase XerD — —
Escherichia fergusonii Becca 0.48 EFB2_02079 Crossover junction endodeoxyribonuclease RuvC 0.60 EFB2_01007 Tyrosine recombinase XerD — —
Escherichia coli Nissle 1917 0.48 ECOLIN_RS10375 crossover junction endodeoxyribonuclease RuvC 0.60 ECOLIN_RS16125 site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC101 0.48 MCAODC_19140 ruvC crossover junction endodeoxyribonuclease RuvC 0.60 MCAODC_10090 xerD site-specific tyrosine recombinase XerD — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF1644 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.60 GFF2991 Tyrosine recombinase XerD — —
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_04253 Holliday junction endonuclease RuvC 0.54 H281DRAFT_04126 integrase/recombinase XerD — —
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS16605 crossover junction endodeoxyribonuclease RuvC 0.54 BPHYT_RS15950 tyrosine recombinase XerD — —
Paraburkholderia graminis OAS925 0.45 ABIE53_003493 crossover junction endodeoxyribonuclease RuvC 0.53 ABIE53_003361 integrase/recombinase XerD — —
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_1124 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.62 B158DRAFT_2265 tyrosine recombinase XerD 0.76 9
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS26785 crossover junction endodeoxyribonuclease RuvC 0.51 QEN71_RS02755 site-specific tyrosine recombinase XerD — —
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS02715 Holliday junction DNA helicase 0.50 RR42_RS03345 recombinase XerD — —
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS07635 crossover junction endodeoxyribonuclease RuvC 0.48 ABZR87_RS00795 site-specific tyrosine recombinase XerD low > 80
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS11680 crossover junction endodeoxyribonuclease RuvC 0.50 RALBFv3_RS05140 site-specific tyrosine recombinase XerD — —
Ralstonia solanacearum UW163 0.41 UW163_RS01905 crossover junction endodeoxyribonuclease RuvC 0.50 UW163_RS08485 site-specific tyrosine recombinase XerD — —
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS02080 Holliday junction resolvase 0.52 HSERO_RS04265 tyrosine recombinase XerD — —
Ralstonia solanacearum GMI1000 0.41 RS_RS02500 crossover junction endodeoxyribonuclease RuvC 0.50 RS_RS12755 tyrosine recombinase XerD — —
Dechlorosoma suillum PS 0.41 Dsui_0486 crossover junction endodeoxyribonuclease RuvC 0.53 Dsui_1217 tyrosine recombinase XerD — —
Ralstonia solanacearum PSI07 0.40 RPSI07_RS21535 crossover junction endodeoxyribonuclease RuvC 0.50 RPSI07_RS12160 site-specific tyrosine recombinase XerD — —
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4050 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.54 Ac3H11_302 Tyrosine recombinase XerD — —
Variovorax sp. OAS795 0.38 ABID97_RS06275 crossover junction endodeoxyribonuclease RuvC 0.50 ABID97_RS20265 site-specific tyrosine recombinase XerD 0.50 4
Variovorax sp. SCN45 0.38 GFF4462 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.51 GFF2772 Site-specific tyrosine recombinase XerD low > 127
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS10845 crossover junction endodeoxyribonuclease RuvC 0.46 ABZR86_RS19225 site-specific tyrosine recombinase XerD — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF572 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.49 GFF5461 Tyrosine recombinase XerD — —
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_01835 ruvC crossover junction endodeoxyribonuclease RuvC 0.46 OKGIIK_11520 xerD site-specific tyrosine recombinase XerD — —
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS04915 crossover junction endodeoxyribonuclease RuvC 0.45 LRK54_RS04735 site-specific tyrosine recombinase XerD — —
Rhodanobacter denitrificans MT42 0.35 LRK55_RS04695 crossover junction endodeoxyribonuclease RuvC 0.45 LRK55_RS04515 site-specific tyrosine recombinase XerD — —
Bosea sp. OAE506 0.34 ABIE41_RS09470 crossover junction endodeoxyribonuclease RuvC 0.30 ABIE41_RS06100 site-specific tyrosine recombinase XerD 0.53 13
Pontibacter actiniarum KMM 6156, DSM 19842 0.34 CA264_03880 crossover junction endodeoxyribonuclease RuvC 0.36 CA264_00850 site-specific tyrosine recombinase XerD — —
Castellaniella sp019104865 MT123 0.34 ABCV34_RS07975 crossover junction endodeoxyribonuclease RuvC 0.50 ABCV34_RS00515 site-specific tyrosine recombinase XerD — —
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.1435.1 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.49 Xcc-8004.4441.1 Tyrosine recombinase XerD — —
Desulfovibrio vulgaris Hildenborough JW710 0.34 DVU2258 ruvC crossover junction endodeoxyribonuclease RuvC (TIGR) 0.38 DVU1654 xerD site-specific recombinase, phage integrase family (TIGR) low > 55
Rhodospirillum rubrum S1H 0.33 Rru_A1087 Crossover junction endodeoxyribonuclease RuvC (NCBI) 0.33 Rru_A3738 Phage integrase (NCBI) — —
Magnetospirillum magneticum AMB-1 0.32 AMB_RS16260 crossover junction endodeoxyribonuclease RuvC 0.32 AMB_RS19880 site-specific tyrosine recombinase XerD — —
Dinoroseobacter shibae DFL-12 0.32 Dshi_1103 crossover junction endodeoxyribonuclease RuvC (RefSeq) 0.33 Dshi_1611 integrase family protein (RefSeq) — —
Caulobacter crescentus NA1000 0.32 CCNA_03346 crossover junction endodeoxyribonuclease ruvC 0.29 CCNA_03101 site-specific tyrosine recombinase XerD low > 66
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_03346 crossover junction endodeoxyribonuclease ruvC 0.29 CCNA_03101 site-specific tyrosine recombinase XerD — —
Parabacteroides merdae CL09T00C40 0.31 HMPREF1078_RS13315 crossover junction endodeoxyribonuclease RuvC 0.38 HMPREF1078_RS04705 site-specific tyrosine recombinase XerD low > 61
Rhizobium sp. OAE497 0.30 ABIE40_RS15730 crossover junction endodeoxyribonuclease RuvC 0.36 ABIE40_RS17685 site-specific tyrosine recombinase XerD 0.37 10
Agrobacterium fabrum C58 0.30 Atu3724 Holliday junction resolvase 0.32 Atu3629 site-specific tyrosine recombinase XerD — —
Sinorhizobium meliloti 1021 0.30 SMc03967 Holliday junction resolvase 0.33 SMc00691 site-specific tyrosine recombinase XerD low > 103
Fusobacterium nucleatum SB010 0.30 HUW76_02575 crossover junction endodeoxyribonuclease RuvC 0.14 HUW76_06795 tyrosine-type recombinase/integrase — —
Lysobacter sp. OAE881 0.29 ABIE51_RS05040 crossover junction endodeoxyribonuclease RuvC 0.55 ABIE51_RS04495 site-specific tyrosine recombinase XerD — —
Phocaeicola vulgatus CL09T03C04 0.29 HMPREF1058_RS01800 crossover junction endodeoxyribonuclease RuvC 0.37 HMPREF1058_RS09680 site-specific tyrosine recombinase XerD low > 67
Phocaeicola dorei CL03T12C01 0.29 ABI39_RS15265 crossover junction endodeoxyribonuclease RuvC 0.37 ABI39_RS07000 site-specific tyrosine recombinase XerD low > 72
Bacteroides stercoris CC31F 0.29 HMPREF1181_RS05370 crossover junction endodeoxyribonuclease RuvC 0.36 HMPREF1181_RS01250 site-specific tyrosine recombinase XerD low > 56
Bacteroides ovatus ATCC 8483 0.29 BACOVA_04396 crossover junction endodeoxyribonuclease RuvC 0.38 BACOVA_02123 tyrosine recombinase XerD — —
Bacteroides thetaiotaomicron VPI-5482 0.28 BT_1664 ruvC Holliday junction resolvase (RefSeq) 0.36 BT2843 integrase (NCBI ptt file) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS15855 crossover junction endodeoxyribonuclease RuvC 0.28 A4249_RS04165 site-specific tyrosine recombinase XerD — —
Phaeobacter inhibens DSM 17395 0.28 PGA1_c05850 crossover junction endodeoxyribonuclease RuvC 0.30 PGA1_c14060 tyrosine recombinase XerD — —
Rhodopseudomonas palustris CGA009 0.26 TX73_005650 crossover junction endodeoxyribonuclease RuvC 0.33 TX73_002625 site-specific tyrosine recombinase XerD — —
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_0822 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.26 Ga0059261_3595 Site-specific recombinase XerD — —

Not shown: 1 genomes with orthologs for PP_1215 only; 8 genomes with orthologs for PP_1468 only