Conservation of cofitness between PP_4002 and PP_1226 in Pseudomonas putida KT2440

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4002 DNA-dependent ATPase required for recombination 1.0 PP_1226 pre-queuosine 0 synthase 0.24 19
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_27640 recombination factor protein RarA 0.92 AO353_03535 7-cyano-7-deazaguanine synthase low > 101
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_4062 FIG065221: Holliday junction DNA helicase 0.91 Pf1N1B4_628 Queuosine Biosynthesis QueC ATPase low > 87
Pseudomonas sp. RS175 0.92 PFR28_02606 Replication-associated recombination protein A 0.91 PFR28_03403 7-cyano-7-deazaguanine synthase low > 88
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_22185 recombination factor protein RarA 0.92 AO356_18070 7-cyano-7-deazaguanine synthase low > 104
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_299 FIG065221: Holliday junction DNA helicase 0.92 Pf6N2E2_5546 Queuosine Biosynthesis QueC ATPase low > 103
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_2653 FIG065221: Holliday junction DNA helicase 0.88 PfGW456L13_1862 Queuosine Biosynthesis QueC ATPase low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_3177 Recombination protein MgsA 0.90 Psyr_1419 preQ(0) biosynthesis protein QueC low > 86
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_3177 Recombination protein MgsA 0.90 Psyr_1419 preQ(0) biosynthesis protein QueC low > 86
Pseudomonas simiae WCS417 0.91 PS417_16480 recombination factor protein RarA 0.93 PS417_22400 7-cyano-7-deazaguanine synthase low > 88
Pseudomonas fluorescens SBW25 0.91 PFLU_RS18520 replication-associated recombination protein A 0.93 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC low > 109
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS18520 replication-associated recombination protein A 0.93 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC low > 109
Pseudomonas sp. S08-1 0.88 OH686_00270 Replication-associated recombination protein RarA 0.85 OH686_19180 queuosine biosynthesis protein QueC low > 80
Pseudomonas stutzeri RCH2 0.86 Psest_2034 ATPase related to the helicase subunit of the Holliday junction resolvase 0.87 Psest_1506 queuosine biosynthesis protein QueC low > 67
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_1819 ATPase related to the helicase subunit of the Holliday junction resolvase 0.72 B158DRAFT_1146 preQ(0) biosynthesis protein QueC low > 40
Marinobacter adhaerens HP15 0.64 HP15_1817 recombination factor protein RarA 0.32 HP15_3814 ExsB protein low > 73
Rahnella sp. WP5 0.60 EX31_RS18515 replication-associated recombination protein A 0.30 EX31_RS22280 7-cyano-7-deazaguanine synthase QueC low > 89
Klebsiella michiganensis M5al 0.60 BWI76_RS09670 recombination factor protein RarA 0.32 BWI76_RS06560 7-cyano-7-deazaguanine synthase QueC low > 92
Enterobacter asburiae PDN3 0.60 EX28DRAFT_2040 ATPase related to the helicase subunit of the Holliday junction resolvase 0.31 EX28DRAFT_2526 queuosine biosynthesis protein QueC low > 76
Shewanella sp. ANA-3 0.59 Shewana3_2052 recombination factor protein RarA (RefSeq) 0.26 Shewana3_2164 queuosine biosynthesis protein QueC (RefSeq) low > 73
Serratia liquefaciens MT49 0.59 IAI46_08570 replication-associated recombination protein A 0.30 IAI46_05045 7-cyano-7-deazaguanine synthase QueC low > 86
Shewanella loihica PV-4 0.59 Shew_2022 recombination factor protein RarA (RefSeq) 0.28 Shew_2062 exsB protein (RefSeq) — —
Enterobacter sp. TBS_079 0.59 MPMX20_01554 Replication-associated recombination protein A 0.31 MPMX20_01035 7-cyano-7-deazaguanine synthase low > 85
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_05630 replication-associated recombination protein A 0.29 CSW01_06875 7-cyano-7-deazaguanine synthase QueC low > 62
Erwinia tracheiphila SCR3 0.59 LU632_RS09755 replication-associated recombination protein A 0.31 LU632_RS18310 queC 7-cyano-7-deazaguanine synthase QueC low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF4896 FIG065221: Holliday junction DNA helicase 0.32 GFF4360 Queuosine Biosynthesis QueC ATPase low > 78
Shewanella oneidensis MR-1 0.59 SO2308 ATPase, AAA family (NCBI ptt file) 0.26 SO2503 exsB exsB protein (NCBI ptt file) low > 76
Escherichia coli ECRC101 0.59 OKFHMN_05560 rarA replication-associated recombination protein RarA 0.31 OKFHMN_08295 queC 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli BW25113 0.59 b0892 ycaJ recombination protein (NCBI) 0.31 b0444 ybaX predicted aluminum resistance protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_02776 Replication-associated recombination protein A 0.31 OHPLBJKB_03229 7-cyano-7-deazaguanine synthase low > 73
Escherichia coli ECRC101 0.59 MCAODC_24950 rarA replication-associated recombination protein RarA 0.31 MCAODC_27520 queC 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli ECRC102 0.59 NIAGMN_03280 rarA replication-associated recombination protein RarA 0.31 NIAGMN_06350 queC 7-cyano-7-deazaguanine synthase QueC — —
Escherichia fergusonii Becca 0.59 EFB2_03169 Replication-associated recombination protein A 0.31 EFB2_03613 7-cyano-7-deazaguanine synthase low > 86
Escherichia coli Nissle 1917 0.59 ECOLIN_RS04745 replication-associated recombination protein RarA 0.31 ECOLIN_RS02660 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli ECRC98 0.59 JDDGAC_09370 rarA replication-associated recombination protein RarA 0.31 JDDGAC_11950 queC 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli ECOR27 0.59 NOLOHH_22130 rarA replication-associated recombination protein RarA 0.31 NOLOHH_01230 queC 7-cyano-7-deazaguanine synthase QueC low > 57
Escherichia coli ECRC99 0.59 KEDOAH_22175 rarA replication-associated recombination protein RarA 0.31 KEDOAH_19670 queC 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli ECOR38 0.59 HEPCGN_22950 rarA replication-associated recombination protein RarA 0.31 HEPCGN_06910 queC 7-cyano-7-deazaguanine synthase QueC low > 85
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS04355 recombination factor protein RarA 0.67 RR42_RS15445 7-cyano-7-deazaguanine synthase low > 128
Escherichia coli BL21 0.59 ECD_00896 recombination intermediate processing DNA-dependent ATPase 0.31 ECD_00396 7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis low > 60
Pantoea sp. MT58 0.59 IAI47_12900 replication-associated recombination protein A 0.30 IAI47_14620 7-cyano-7-deazaguanine synthase QueC low > 76
Escherichia coli ECRC62 0.59 BNILDI_20385 rarA replication-associated recombination protein RarA 0.31 BNILDI_22645 queC 7-cyano-7-deazaguanine synthase QueC — —
Dickeya dadantii 3937 0.58 DDA3937_RS09605 replication-associated recombination protein A 0.30 DDA3937_RS05670 7-cyano-7-deazaguanine synthase QueC low > 74
Dickeya dianthicola ME23 0.58 DZA65_RS09930 replication-associated recombination protein A 0.29 DZA65_RS06040 7-cyano-7-deazaguanine synthase QueC low > 75
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS03415 replication-associated recombination protein A 0.22 QEN71_RS00200 7-cyano-7-deazaguanine synthase QueC low > 153
Dickeya dianthicola 67-19 0.58 HGI48_RS09620 replication-associated recombination protein A 0.30 HGI48_RS05715 7-cyano-7-deazaguanine synthase QueC 0.55 6
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS16030 replication-associated recombination protein A 0.67 ABZR87_RS09000 7-cyano-7-deazaguanine synthase QueC low > 80
Paraburkholderia graminis OAS925 0.58 ABIE53_001292 putative ATPase 0.22 ABIE53_000396 7-cyano-7-deazaguanine synthase low > 113
Pectobacterium carotovorum WPP14 0.58 HER17_RS12345 replication-associated recombination protein A 0.30 HER17_RS15815 7-cyano-7-deazaguanine synthase QueC low > 75
Shewanella amazonensis SB2B 0.58 Sama_1774 recombination factor protein RarA (RefSeq) 0.28 Sama_1826 ExsB protein (RefSeq) low > 62
Ralstonia solanacearum PSI07 0.58 RPSI07_RS13205 replication-associated recombination protein A 0.68 RPSI07_RS20285 7-cyano-7-deazaguanine synthase QueC low > 81
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS05100 ATPase AAA 0.22 BPHYT_RS01500 7-cyano-7-deazaguanine synthase low > 109
Ralstonia solanacearum UW163 0.57 UW163_RS09525 replication-associated recombination protein A 0.68 UW163_RS00625 7-cyano-7-deazaguanine synthase QueC — —
Ralstonia solanacearum IBSBF1503 0.57 RALBFv3_RS04145 replication-associated recombination protein A 0.68 RALBFv3_RS12940 7-cyano-7-deazaguanine synthase QueC low > 76
Dechlorosoma suillum PS 0.56 Dsui_1694 AAA ATPase 0.67 Dsui_0549 queuosine biosynthesis protein QueC low > 51
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_00180 Recombination protein MgsA 0.22 H281DRAFT_02232 preQ(0) biosynthesis protein QueC low > 103
Herbaspirillum seropedicae SmR1 0.56 HSERO_RS09515 ATPase AAA 0.21 HSERO_RS20880 7-cyano-7-deazaguanine synthase low > 78
Ralstonia solanacearum GMI1000 0.56 RS_RS11735 replication-associated recombination protein A 0.67 RS_RS03715 7-cyano-7-deazaguanine synthase low > 80
Castellaniella sp019104865 MT123 0.55 ABCV34_RS07220 replication-associated recombination protein A 0.22 ABCV34_RS10950 7-cyano-7-deazaguanine synthase QueC low > 48
Xanthomonas campestris pv. campestris strain 8004 0.55 Xcc-8004.2744.1 FIG065221: Holliday junction DNA helicase 0.64 Xcc-8004.1450.1 Queuosine Biosynthesis QueC ATPase low > 74
Alteromonas macleodii MIT1002 0.54 MIT1002_02178 Replication-associated recombination protein A 0.34 MIT1002_01263 7-cyano-7-deazaguanine synthase low > 70
Variovorax sp. SCN45 0.54 GFF6034 Replication-associated recombination protein RarA 0.23 GFF5214 7-cyano-7-deazaguanine synthase (EC 6.3.4.20) low > 127
Acidovorax sp. GW101-3H11 0.53 Ac3H11_1696 FIG065221: Holliday junction DNA helicase 0.21 Ac3H11_4838 Queuosine Biosynthesis QueC ATPase low > 79
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_07580 rarA recombination factor protein RarA 0.66 OKGIIK_01895 queC 7-cyano-7-deazaguanine synthase QueC low > 52
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS17320 replication-associated recombination protein A 0.65 LRK54_RS04855 7-cyano-7-deazaguanine synthase QueC low > 59
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS01825 replication-associated recombination protein A 0.64 ABZR86_RS10785 7-cyano-7-deazaguanine synthase QueC low > 74
Rhodanobacter denitrificans MT42 0.53 LRK55_RS17545 replication-associated recombination protein A 0.65 LRK55_RS04635 7-cyano-7-deazaguanine synthase QueC low > 63
Lysobacter sp. OAE881 0.52 ABIE51_RS11445 replication-associated recombination protein A 0.69 ABIE51_RS05105 7-cyano-7-deazaguanine synthase QueC low > 62
Azospirillum brasilense Sp245 0.48 AZOBR_RS06885 ATPase AAA 0.57 AZOBR_RS04150 7-cyano-7-deazaguanine synthase low > 97
Phaeobacter inhibens DSM 17395 0.48 PGA1_c01930 replication-associated recombination protein A 0.30 PGA1_c05600 queuosine biosynthesis protein QueC low > 62
Sinorhizobium meliloti 1021 0.47 SMc01279 recombination factor protein RarA 0.30 SM_b20940 hypothetical protein low > 103
Brevundimonas sp. GW460-12-10-14-LB2 0.47 A4249_RS07890 replication-associated recombination protein A 0.22 A4249_RS08700 7-cyano-7-deazaguanine synthase QueC — —
Azospirillum sp. SherDot2 0.47 MPMX19_01528 Replication-associated recombination protein A 0.59 MPMX19_00425 7-cyano-7-deazaguanine synthase low > 112
Agrobacterium fabrum C58 0.47 Atu1914 ATPase, AAA family protein 0.28 Atu3346 succinoglycan biosynthesis regulator low > 89
Magnetospirillum magneticum AMB-1 0.46 AMB_RS17620 replication-associated recombination protein A 0.59 AMB_RS20345 7-cyano-7-deazaguanine synthase low > 64
Rhodopseudomonas palustris CGA009 0.46 TX73_016655 replication-associated recombination protein A 0.24 TX73_014550 7-cyano-7-deazaguanine synthase QueC low > 86
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF777 FIG065221: Holliday junction DNA helicase 0.19 GFF1402 Queuosine Biosynthesis QueC ATPase low > 90
Rhodospirillum rubrum S1H 0.45 Rru_A2660 AAA ATPase, central region (NCBI) 0.60 Rru_A1957 ExsB (NCBI) low > 58
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_01342 ATPase, AAA family 0.23 CCNA_03262 queuosine biosynthesis protein QueC low > 67
Caulobacter crescentus NA1000 0.45 CCNA_01342 ATPase, AAA family 0.23 CCNA_03262 queuosine biosynthesis protein QueC low > 66
Bosea sp. OAE506 0.44 ABIE41_RS14690 replication-associated recombination protein A 0.24 ABIE41_RS11340 7-cyano-7-deazaguanine synthase QueC low > 77
Bacteroides ovatus ATCC 8483 0.43 BACOVA_03971 ATPase, AAA family 0.27 BACOVA_04309 protein ExsB low > 94
Bacteroides stercoris CC31F 0.42 HMPREF1181_RS16975 replication-associated recombination protein A 0.27 HMPREF1181_RS11150 7-cyano-7-deazaguanine synthase QueC low > 56
Parabacteroides merdae CL09T00C40 0.42 HMPREF1078_RS15395 replication-associated recombination protein A 0.23 HMPREF1078_RS14060 7-cyano-7-deazaguanine synthase QueC low > 61
Bacteroides thetaiotaomicron VPI-5482 0.42 BT1205 putative ATPase, AAA family (NCBI ptt file) 0.26 BT1566 putative aluminum resistance protein (NCBI ptt file) — —
Phocaeicola dorei CL03T12C01 0.41 ABI39_RS20200 replication-associated recombination protein A 0.27 ABI39_RS11300 7-cyano-7-deazaguanine synthase QueC low > 72
Phocaeicola vulgatus CL09T03C04 0.41 HMPREF1058_RS06440 replication-associated recombination protein A 0.27 HMPREF1058_RS15270 7-cyano-7-deazaguanine synthase QueC low > 67
Acinetobacter radioresistens SK82 0.40 MPMX26_02987 Replication-associated recombination protein A 0.62 MPMX26_02175 7-cyano-7-deazaguanine synthase 0.43 19
Desulfovibrio vulgaris Hildenborough JW710 0.33 DVU1686 ATPase, AAA family (TIGR) 0.21 DVU2659 exsB protein (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.32 DvMF_0339 recombination factor protein RarA (RefSeq) 0.22 DvMF_1125 exsB protein (RefSeq) low > 51

Not shown: 10 genomes with orthologs for PP_4002 only; 4 genomes with orthologs for PP_1226 only