| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4098 | | UvrABC system protein C | 1.0 | PP_1217 | | Holliday junction ATP-dependent DNA helicase RuvB | 0.26 | 6 |
| Pseudomonas fluorescens FW300-N2C3 | 0.87 | AO356_00350 | | excinuclease ABC subunit C | 0.88 | AO356_18025 | | ATP-dependent DNA helicase RuvB | low | > 104 |
| Pseudomonas simiae WCS417 | 0.87 | PS417_10725 | | excinuclease ABC subunit C | 0.89 | PS417_22445 | | ATP-dependent DNA helicase RuvB | 0.18 | 51 |
| Pseudomonas fluorescens SBW25-INTG | 0.87 | PFLU_RS10770 | | excinuclease ABC subunit UvrC | 0.89 | PFLU_RS24085 | | Holliday junction branch migration DNA helicase RuvB | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.87 | PFLU_RS10770 | | excinuclease ABC subunit UvrC | 0.89 | PFLU_RS24085 | | Holliday junction branch migration DNA helicase RuvB | 0.47 | 42 |
| Pseudomonas syringae pv. syringae B728a | 0.86 | Psyr_2896 | | Excinuclease ABC subunit C | 0.87 | Psyr_1410 | | Holliday junction DNA helicase RuvB | 0.23 | 26 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.86 | Psyr_2896 | | Excinuclease ABC subunit C | 0.87 | Psyr_1410 | | Holliday junction DNA helicase RuvB | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.86 | Pf1N1B4_5618 | | Excinuclease ABC subunit C | 0.89 | Pf1N1B4_637 | | Holliday junction DNA helicase RuvB | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.86 | PfGW456L13_2886 | | Excinuclease ABC subunit C | 0.89 | PfGW456L13_1853 | | Holliday junction DNA helicase RuvB | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.86 | AO353_21835 | | excinuclease ABC subunit C | 0.89 | AO353_03580 | | ATP-dependent DNA helicase RuvB | low | > 101 |
| Pseudomonas sp. RS175 | 0.84 | PFR28_01411 | | UvrABC system protein C | 0.88 | PFR28_03412 | | Holliday junction ATP-dependent DNA helicase RuvB | 0.30 | 48 |
| Pseudomonas stutzeri RCH2 | 0.84 | Psest_2259 | | excinuclease ABC, C subunit | 0.85 | Psest_1497 | | Holliday junction DNA helicase, RuvB subunit | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.84 | Pf6N2E2_2021 | | Excinuclease ABC subunit C | 0.88 | Pf6N2E2_5537 | | Holliday junction DNA helicase RuvB | — | — |
| Pseudomonas sp. S08-1 | 0.82 | OH686_00340 | | excinuclease ABC subunit C | 0.85 | OH686_19135 | | Holliday junction DNA helicase RuvB | low | > 80 |
| Marinobacter adhaerens HP15 | 0.56 | HP15_1568 | | excinuclease ABC subunit C | 0.76 | HP15_2040 | | Holliday junction ATP-dependent DNA helicase RuvB | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.55 | LRK54_RS00380 | | excinuclease ABC subunit UvrC | 0.67 | LRK54_RS04900 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Rhodanobacter denitrificans MT42 | 0.55 | LRK55_RS00120 | | excinuclease ABC subunit UvrC | 0.67 | LRK55_RS04680 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Rhodanobacter sp. FW510-T8 | 0.54 | OKGIIK_06930 | uvrC | excinuclease ABC subunit UvrC | 0.68 | OKGIIK_01850 | ruvB | Holliday junction branch migration DNA helicase RuvB | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.53 | ABZR86_RS02245 | | excinuclease ABC subunit UvrC | 0.68 | ABZR86_RS10830 | | Holliday junction branch migration DNA helicase RuvB | 0.58 | 39 |
| Escherichia coli BL21 | 0.52 | ECD_01878 | | excinuclease UvrABC, endonuclease subunit | 0.72 | ECD_01831 | | ATP-dependent DNA helicase, component of RuvABC resolvasome | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.52 | OHPLBJKB_01816 | | UvrABC system protein C | 0.72 | OHPLBJKB_01868 | | Holliday junction ATP-dependent DNA helicase RuvB | — | — |
| Escherichia coli BW25113 | 0.52 | b1913 | uvrC | excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) | 0.72 | b1860 | ruvB | Holliday junction DNA helicase B (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.52 | ECOLIN_RS10895 | | excinuclease ABC subunit UvrC | 0.72 | ECOLIN_RS10360 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Escherichia fergusonii Becca | 0.52 | EFB2_02033 | | UvrABC system protein C | 0.72 | EFB2_02082 | | Holliday junction ATP-dependent DNA helicase RuvB | — | — |
| Escherichia coli ECRC101 | 0.52 | MCAODC_19565 | uvrC | excinuclease ABC subunit UvrC | 0.72 | MCAODC_19120 | ruvB | Holliday junction branch migration DNA helicase RuvB | — | — |
| Klebsiella michiganensis M5al | 0.52 | BWI76_RS18330 | | excinuclease ABC subunit C | 0.72 | BWI76_RS18145 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Escherichia coli ECRC102 | 0.52 | NIAGMN_02225 | uvrC | excinuclease ABC subunit UvrC | 0.72 | NIAGMN_01775 | ruvB | Holliday junction branch migration DNA helicase RuvB | — | — |
| Escherichia coli ECRC62 | 0.52 | BNILDI_15235 | uvrC | excinuclease ABC subunit UvrC | 0.72 | BNILDI_15520 | ruvB | Holliday junction branch migration DNA helicase RuvB | — | — |
| Escherichia coli ECRC99 | 0.52 | KEDOAH_02265 | uvrC | excinuclease ABC subunit UvrC | 0.72 | KEDOAH_01820 | ruvB | Holliday junction branch migration DNA helicase RuvB | — | — |
| Escherichia coli ECOR38 | 0.52 | HEPCGN_04180 | uvrC | excinuclease ABC subunit UvrC | 0.72 | HEPCGN_04695 | ruvB | Holliday junction branch migration DNA helicase RuvB | low | > 85 |
| Escherichia coli ECRC98 | 0.52 | JDDGAC_00415 | uvrC | excinuclease ABC subunit UvrC | 0.72 | JDDGAC_00860 | ruvB | Holliday junction branch migration DNA helicase RuvB | — | — |
| Escherichia coli ECRC101 | 0.52 | OKFHMN_25825 | uvrC | excinuclease ABC subunit UvrC | 0.72 | OKFHMN_26285 | ruvB | Holliday junction branch migration DNA helicase RuvB | — | — |
| Escherichia coli ECOR27 | 0.52 | NOLOHH_16445 | uvrC | excinuclease ABC subunit UvrC | 0.72 | NOLOHH_16730 | ruvB | Holliday junction branch migration DNA helicase RuvB | — | — |
| Serratia liquefaciens MT49 | 0.52 | IAI46_09210 | | excinuclease ABC subunit UvrC | 0.74 | IAI46_14620 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.51 | CSW01_06140 | | excinuclease ABC subunit C | 0.71 | CSW01_09240 | | Holliday junction branch migration DNA helicase RuvB | low | > 62 |
| Erwinia tracheiphila SCR3 | 0.51 | LU632_RS10195 | uvrC | excinuclease ABC subunit UvrC | 0.72 | LU632_RS13410 | ruvB | Holliday junction branch migration DNA helicase RuvB | — | — |
| Pantoea sp. MT58 | 0.51 | IAI47_12465 | | excinuclease ABC subunit UvrC | 0.74 | IAI47_08450 | | Holliday junction branch migration DNA helicase RuvB | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.51 | GFF1700 | | Excinuclease ABC subunit C | 0.71 | GFF1639 | | Holliday junction DNA helicase RuvB | — | — |
| Shewanella sp. ANA-3 | 0.51 | Shewana3_1609 | uvrC | excinuclease ABC subunit C (RefSeq) | 0.71 | Shewana3_1957 | ruvB | Holliday junction DNA helicase RuvB (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.51 | SO1861 | uvrC | excinuclease ABC, C subunit (NCBI ptt file) | 0.71 | SO2429 | ruvB | Holliday junction DNA helicase RuvB (NCBI ptt file) | 0.37 | 20 |
| Dickeya dianthicola 67-19 | 0.51 | HGI48_RS13795 | | excinuclease ABC subunit UvrC | 0.73 | HGI48_RS10115 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Dickeya dianthicola ME23 | 0.51 | DZA65_RS14285 | | excinuclease ABC subunit UvrC | 0.73 | DZA65_RS10530 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Dickeya dadantii 3937 | 0.51 | DDA3937_RS13700 | | excinuclease ABC subunit UvrC | 0.73 | DDA3937_RS10085 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Shewanella amazonensis SB2B | 0.51 | Sama_1608 | uvrC | excinuclease ABC subunit C (RefSeq) | 0.69 | Sama_1839 | ruvB | Holliday junction DNA helicase RuvB (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.51 | Shew_1825 | uvrC | excinuclease ABC subunit C (RefSeq) | 0.69 | Shew_2075 | ruvB | Holliday junction DNA helicase B (RefSeq) | low | > 60 |
| Pectobacterium carotovorum WPP14 | 0.51 | HER17_RS07715 | | excinuclease ABC subunit UvrC | 0.73 | HER17_RS11840 | | Holliday junction branch migration DNA helicase RuvB | low | > 75 |
| Enterobacter asburiae PDN3 | 0.51 | EX28DRAFT_0634 | | Excinuclease ABC subunit C | 0.71 | EX28DRAFT_0696 | | Holliday junction DNA helicase subunit RuvB | — | — |
| Enterobacter sp. TBS_079 | 0.51 | MPMX20_02838 | | UvrABC system protein C | 0.72 | MPMX20_02766 | | Holliday junction ATP-dependent DNA helicase RuvB | low | > 85 |
| Rahnella sp. WP5 | 0.51 | EX31_RS24150 | | excinuclease ABC subunit UvrC | 0.73 | EX31_RS11670 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Dechlorosoma suillum PS | 0.50 | Dsui_2470 | | excinuclease ABC, C subunit | 0.70 | Dsui_0484 | | Holliday junction DNA helicase, RuvB subunit | — | — |
| Kangiella aquimarina DSM 16071 | 0.50 | B158DRAFT_1273 | | Excinuclease ABC subunit C | 0.71 | B158DRAFT_1136 | | Holliday junction DNA helicase subunit RuvB | 0.46 | 37 |
| Acinetobacter radioresistens SK82 | 0.49 | MPMX26_00228 | | UvrABC system protein C | 0.69 | MPMX26_02186 | | Holliday junction ATP-dependent DNA helicase RuvB | low | > 36 |
| Alteromonas macleodii MIT1002 | 0.49 | MIT1002_02153 | | Excinuclease ABC subunit C | 0.72 | MIT1002_01333 | | Holliday junction ATP-dependent DNA helicase RuvB | — | — |
| Lysobacter sp. OAE881 | 0.47 | ABIE51_RS12455 | | excinuclease ABC subunit UvrC | 0.69 | ABIE51_RS05055 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.47 | Xcc-8004.2477.1 | | Excinuclease ABC subunit C | 0.67 | Xcc-8004.1439.1 | | Holliday junction DNA helicase RuvB | — | — |
| Herbaspirillum seropedicae SmR1 | 0.46 | HSERO_RS09690 | | excinuclease ABC subunit C | 0.68 | HSERO_RS02095 | | Holliday junction DNA helicase RuvB | low | > 78 |
| Cupriavidus basilensis FW507-4G11 | 0.45 | RR42_RS14000 | | excinuclease ABC subunit C | 0.69 | RR42_RS02700 | | ATP-dependent DNA helicase RuvB | — | — |
| Ralstonia sp. UNC404CL21Col | 0.45 | ABZR87_RS10245 | | excinuclease ABC subunit UvrC | 0.69 | ABZR87_RS07620 | | Holliday junction branch migration DNA helicase RuvB | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.44 | RS_RS05305 | | excinuclease ABC subunit UvrC | 0.69 | RS_RS02485 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Ralstonia solanacearum PSI07 | 0.44 | RPSI07_RS18935 | | excinuclease ABC subunit UvrC | 0.69 | RPSI07_RS21555 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.44 | RALBFv3_RS14525 | | excinuclease ABC subunit UvrC | 0.68 | RALBFv3_RS11665 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Ralstonia solanacearum UW163 | 0.44 | UW163_RS11990 | | excinuclease ABC subunit UvrC | 0.68 | UW163_RS01920 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Castellaniella sp019104865 MT123 | 0.44 | ABCV34_RS06980 | | excinuclease ABC subunit UvrC | 0.67 | ABCV34_RS07990 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Variovorax sp. OAS795 | 0.42 | ABID97_RS10635 | | excinuclease ABC subunit UvrC | 0.67 | ABID97_RS24875 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Variovorax sp. SCN45 | 0.42 | GFF2859 | | Excinuclease ABC subunit C | 0.67 | GFF2090 | | Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF3847 | | Excinuclease ABC subunit C | 0.68 | GFF1665 | | Holliday junction DNA helicase RuvB | — | — |
| Acidovorax sp. GW101-3H11 | 0.40 | Ac3H11_373 | | Excinuclease ABC subunit C | 0.67 | Ac3H11_4685 | | Holliday junction DNA helicase RuvB | — | — |
| Rhodopseudomonas palustris CGA009 | 0.39 | TX73_006010 | | excinuclease ABC subunit UvrC | 0.59 | TX73_005665 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Phaeobacter inhibens DSM 17395 | 0.39 | PGA1_c02880 | | uvrABC system protein C | 0.57 | PGA1_c05870 | | holliday junction ATP-dependent DNA helicase RuvB | 0.51 | 14 |
| Azospirillum brasilense Sp245 | 0.39 | AZOBR_RS08965 | | excinuclease ABC subunit C | 0.58 | AZOBR_RS09050 | | Holliday junction DNA helicase RuvB | — | — |
| Dinoroseobacter shibae DFL-12 | 0.39 | Dshi_0644 | | excinuclease ABC, C subunit (RefSeq) | 0.57 | Dshi_1105 | | Holliday junction DNA helicase RuvB (RefSeq) | — | — |
| Azospirillum sp. SherDot2 | 0.38 | MPMX19_01070 | | UvrABC system protein C | 0.59 | MPMX19_00698 | | Holliday junction ATP-dependent DNA helicase RuvB | — | — |
| Rhodospirillum rubrum S1H | 0.38 | Rru_A2220 | | Excinuclease ABC, C subunit (NCBI) | 0.61 | Rru_A1089 | | Holliday junction DNA helicase RuvB (NCBI) | — | — |
| Agrobacterium fabrum C58 | 0.37 | Atu1129 | | excinuclease ABC chain C | 0.57 | Atu3722 | | Holliday junction DNA helicase RuvB | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.36 | Ga0059261_3186 | | Excinuclease ABC subunit C | 0.57 | Ga0059261_0819 | | Holliday junction DNA helicase subunit RuvB | — | — |
| Magnetospirillum magneticum AMB-1 | 0.36 | AMB_RS19240 | | UvrABC system protein C | 0.59 | AMB_RS16245 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Sinorhizobium meliloti 1021 | 0.36 | SMc00602 | | excinuclease ABC subunit C | 0.59 | SMc03965 | | Holliday junction DNA helicase RuvB | — | — |
| Rhizobium sp. OAE497 | 0.35 | ABIE40_RS06500 | | excinuclease ABC subunit UvrC | 0.57 | ABIE40_RS15760 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.34 | A4249_RS01670 | | excinuclease ABC subunit UvrC | 0.57 | A4249_RS15865 | | Holliday junction branch migration DNA helicase RuvB | low | > 48 |
| Caulobacter crescentus NA1000 | 0.33 | CCNA_02975 | | excinuclease ABC subunit C | 0.57 | CCNA_03344 | | Holliday junction DNA helicase RuvB | 0.36 | 33 |
| Caulobacter crescentus NA1000 Δfur | 0.33 | CCNA_02975 | | excinuclease ABC subunit C | 0.57 | CCNA_03344 | | Holliday junction DNA helicase RuvB | — | — |
| Mycobacterium tuberculosis H37Rv | 0.28 | Rv1420 | | Probable excinuclease ABC (subunit C-nuclease) UvrC | 0.53 | Rv2592c | | Probable holliday junction DNA helicase RuvB | — | — |
| Fusobacterium nucleatum SB010 | 0.27 | HUW76_06695 | | excinuclease ABC subunit UvrC | 0.56 | HUW76_04170 | | Holliday junction branch migration DNA helicase RuvB | low | > 35 |
| Parabacteroides merdae CL09T00C40 | 0.26 | HMPREF1078_RS06310 | | excinuclease ABC subunit UvrC | 0.55 | HMPREF1078_RS06175 | | Holliday junction branch migration DNA helicase RuvB | low | > 61 |
| Synechococcus elongatus PCC 7942 | 0.26 | Synpcc7942_1945 | uvrC | excinuclease ABC subunit C | 0.54 | Synpcc7942_0835 | ruvB | Holliday junction DNA helicase B | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.26 | Echvi_0619 | | excinuclease ABC, C subunit | 0.57 | Echvi_0825 | | Holliday junction DNA helicase, RuvB subunit | low | > 79 |
| Phocaeicola dorei CL03T12C01 | 0.26 | ABI39_RS05415 | | excinuclease ABC subunit UvrC | 0.55 | ABI39_RS04970 | | Holliday junction branch migration DNA helicase RuvB | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.26 | HMPREF1058_RS11525 | | excinuclease ABC subunit UvrC | 0.55 | HMPREF1058_RS11890 | | Holliday junction branch migration DNA helicase RuvB | low | > 67 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.25 | BT3266 | | excinuclease ABC subunit C (NCBI ptt file) | 0.56 | BT3285 | | Holliday junction DNA helicase ruvB (NCBI ptt file) | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.25 | CA264_16350 | | excinuclease ABC subunit C | 0.57 | CA264_19800 | | Holliday junction branch migration DNA helicase RuvB | — | — |
| Bacteroides stercoris CC31F | 0.25 | HMPREF1181_RS02095 | | excinuclease ABC subunit UvrC | 0.55 | HMPREF1181_RS02130 | | Holliday junction branch migration DNA helicase RuvB | low | > 56 |
| Bacteroides ovatus ATCC 8483 | 0.24 | BACOVA_01365 | | excinuclease ABC, C subunit | 0.56 | BACOVA_00895 | | Holliday junction DNA helicase RuvB | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.24 | ABZR88_RS04150 | | excinuclease ABC subunit UvrC | 0.57 | ABZR88_RS07990 | | Holliday junction branch migration DNA helicase RuvB | low | > 71 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.24 | CA265_RS18110 | | excinuclease ABC subunit C | 0.57 | CA265_RS07710 | | Holliday junction branch migration DNA helicase RuvB | 0.30 | 39 |
Not shown: 2 genomes with orthologs for PP_4098 only; 8 genomes with orthologs for PP_1217 only