Conservation of cofitness between PP_5310 and PP_1215 in Pseudomonas putida KT2440

91 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5310 junction-specific ATP-dependent DNA helicase 1.0 PP_1215 Crossover junction endodeoxyribonuclease RuvC 0.47 16
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.86 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC low > 109
Pseudomonas fluorescens SBW25 0.89 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.86 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC low > 109
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.89 Pf1N1B4_639 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.87 PfGW456L13_1851 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) low > 87
Pseudomonas simiae WCS417 0.89 PS417_27870 ATP-dependent DNA helicase RecG 0.86 PS417_22455 crossover junction endodeoxyribonuclease RuvC — —
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_09320 ATP-dependent DNA helicase RecG 0.88 AO353_03590 crossover junction endodeoxyribonuclease RuvC 0.41 30
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_0201 ATP-dependent DNA helicase RecG 0.90 Psyr_1408 Holliday junction endonuclease RuvC 0.51 4
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_0201 ATP-dependent DNA helicase RecG 0.90 Psyr_1408 Holliday junction endonuclease RuvC 0.34 83
Pseudomonas sp. RS175 0.87 PFR28_04435 ATP-dependent DNA helicase RecG 0.87 PFR28_03414 Crossover junction endodeoxyribonuclease RuvC 0.29 23
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.87 Pf6N2E2_5535 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_12380 ATP-dependent DNA helicase RecG 0.87 AO356_18015 crossover junction endodeoxyribonuclease RuvC — —
Pseudomonas stutzeri RCH2 0.83 Psest_4192 ATP-dependent DNA helicase RecG 0.86 Psest_1495 crossover junction endodeoxyribonuclease RuvC — —
Pseudomonas sp. S08-1 0.82 OH686_13505 ATP-dependent DNA helicase RecG 0.85 OH686_19125 crossover junction endodeoxyribonuclease RuvC low > 80
Marinobacter adhaerens HP15 0.60 HP15_309 DNA helicase, ATP-dependent, RecG 0.53 HP15_2042 crossover junction endodeoxyribonuclease RuvC — —
Alteromonas macleodii MIT1002 0.57 MIT1002_00111 ATP-dependent DNA helicase RecG 0.51 MIT1002_01331 Crossover junction endodeoxyribonuclease RuvC — —
Shewanella amazonensis SB2B 0.57 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.52 Sama_1841 ruvC Holliday junction resolvase (RefSeq) — —
Pantoea sp. MT58 0.56 IAI47_00500 ATP-dependent DNA helicase RecG 0.49 IAI47_08440 crossover junction endodeoxyribonuclease RuvC low > 76
Escherichia coli ECRC99 0.56 KEDOAH_12600 recG ATP-dependent DNA helicase RecG 0.48 KEDOAH_01840 ruvC crossover junction endodeoxyribonuclease RuvC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.48 GFF1644 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Escherichia coli ECRC101 0.56 OKFHMN_15545 recG ATP-dependent DNA helicase RecG 0.48 OKFHMN_26265 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC102 0.56 NIAGMN_13305 recG ATP-dependent DNA helicase RecG 0.48 NIAGMN_01795 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC98 0.56 JDDGAC_19170 recG ATP-dependent DNA helicase RecG 0.48 JDDGAC_00840 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC101 0.56 MCAODC_06055 recG ATP-dependent DNA helicase RecG 0.48 MCAODC_19140 ruvC crossover junction endodeoxyribonuclease RuvC — —
Shewanella sp. ANA-3 0.56 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.52 Shewana3_1955 ruvC Holliday junction resolvase (RefSeq) — —
Serratia liquefaciens MT49 0.56 IAI46_24905 ATP-dependent DNA helicase RecG 0.50 IAI46_14630 crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 0.48 OHPLBJKB_01865 Crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC62 0.56 BNILDI_04090 recG ATP-dependent DNA helicase RecG 0.48 BNILDI_15500 ruvC crossover junction endodeoxyribonuclease RuvC — —
Erwinia tracheiphila SCR3 0.56 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.48 LU632_RS13420 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECOR27 0.56 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 0.48 NOLOHH_16710 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECOR38 0.56 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 0.48 HEPCGN_04675 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia fergusonii Becca 0.56 EFB2_00136 ATP-dependent DNA helicase RecG 0.48 EFB2_02079 Crossover junction endodeoxyribonuclease RuvC — —
Rahnella sp. WP5 0.56 EX31_RS15820 ATP-dependent DNA helicase RecG 0.48 EX31_RS11680 crossover junction endodeoxyribonuclease RuvC — —
Pectobacterium carotovorum WPP14 0.56 HER17_RS21395 ATP-dependent DNA helicase RecG 0.49 HER17_RS11850 crossover junction endodeoxyribonuclease RuvC low > 75
Escherichia coli BW25113 0.56 b3652 recG ATP-dependent DNA helicase (NCBI) 0.48 b1863 ruvC Holliday junction resolvase (NCBI) 0.53 7
Escherichia coli BL21 0.56 ECD_03509 ATP-dependent DNA helicase 0.48 ECD_01834 component of RuvABC resolvasome, endonuclease — —
Enterobacter asburiae PDN3 0.56 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.48 EX28DRAFT_0694 Holliday junction endonuclease RuvC (EC 3.1.22.4) — —
Escherichia coli Nissle 1917 0.56 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 0.48 ECOLIN_RS10375 crossover junction endodeoxyribonuclease RuvC — —
Shewanella loihica PV-4 0.55 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.54 Shew_2077 crossover junction endodeoxyribonuclease RuvC (RefSeq) 0.63 4
Shewanella oneidensis MR-1 0.55 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.52 SO2431 ruvC crossover junction endodeoxyribonuclease RuvC (NCBI ptt file) low > 76
Enterobacter sp. TBS_079 0.55 MPMX20_00084 ATP-dependent DNA helicase RecG 0.49 MPMX20_02768 Crossover junction endodeoxyribonuclease RuvC 0.32 59
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.37 ABZR86_RS10845 crossover junction endodeoxyribonuclease RuvC — —
Dickeya dadantii 3937 0.55 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.50 DDA3937_RS10070 crossover junction endodeoxyribonuclease RuvC — —
Rhodanobacter denitrificans MT42 0.55 LRK55_RS11530 ATP-dependent DNA helicase RecG 0.35 LRK55_RS04695 crossover junction endodeoxyribonuclease RuvC — —
Acinetobacter radioresistens SK82 0.55 MPMX26_02732 ATP-dependent DNA helicase RecG 0.48 MPMX26_01780 Crossover junction endodeoxyribonuclease RuvC — —
Dickeya dianthicola ME23 0.55 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.50 DZA65_RS10515 crossover junction endodeoxyribonuclease RuvC — —
Klebsiella michiganensis M5al 0.55 BWI76_RS27440 DNA helicase RecG 0.48 BWI76_RS18155 crossover junction endodeoxyribonuclease RuvC — —
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS11805 ATP-dependent DNA helicase RecG 0.35 LRK54_RS04915 crossover junction endodeoxyribonuclease RuvC — —
Dickeya dianthicola 67-19 0.55 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.50 HGI48_RS10100 crossover junction endodeoxyribonuclease RuvC — —
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_13680 DNA helicase RecG 0.56 CSW01_09250 crossover junction endodeoxyribonuclease RuvC low > 62
Rhodanobacter sp. FW510-T8 0.54 OKGIIK_12090 recG ATP-dependent DNA helicase RecG 0.37 OKGIIK_01835 ruvC crossover junction endodeoxyribonuclease RuvC — —
Lysobacter sp. OAE881 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG 0.29 ABIE51_RS05040 crossover junction endodeoxyribonuclease RuvC — —
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.34 Xcc-8004.1435.1 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Kangiella aquimarina DSM 16071 0.51 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.44 B158DRAFT_1124 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.78 4
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS03400 ATP-dependent DNA helicase RecG 0.45 BPHYT_RS16605 crossover junction endodeoxyribonuclease RuvC — —
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS17390 ATP-dependent DNA helicase RecG 0.42 RR42_RS02715 Holliday junction DNA helicase — —
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS26630 ATP-dependent DNA helicase RecG 0.44 QEN71_RS26785 crossover junction endodeoxyribonuclease RuvC — —
Paraburkholderia graminis OAS925 0.46 ABIE53_000833 ATP-dependent DNA helicase RecG 0.45 ABIE53_003493 crossover junction endodeoxyribonuclease RuvC — —
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS01270 ATP-dependent DNA helicase RecG 0.42 ABZR87_RS07635 crossover junction endodeoxyribonuclease RuvC low > 80
Ralstonia solanacearum GMI1000 0.46 RS_RS13565 DNA helicase RecG 0.41 RS_RS02500 crossover junction endodeoxyribonuclease RuvC — —
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04672 ATP-dependent DNA helicase RecG 0.45 H281DRAFT_04253 Holliday junction endonuclease RuvC — —
Ralstonia solanacearum PSI07 0.46 RPSI07_RS11625 DNA helicase RecG 0.40 RPSI07_RS21535 crossover junction endodeoxyribonuclease RuvC — —
Ralstonia solanacearum UW163 0.46 UW163_RS07950 DNA helicase RecG 0.41 UW163_RS01905 crossover junction endodeoxyribonuclease RuvC — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS05675 DNA helicase RecG 0.41 RALBFv3_RS11680 crossover junction endodeoxyribonuclease RuvC — —
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.41 HSERO_RS02080 Holliday junction resolvase — —
Dechlorosoma suillum PS 0.45 Dsui_0311 ATP-dependent DNA helicase RecG 0.41 Dsui_0486 crossover junction endodeoxyribonuclease RuvC — —
Acidovorax sp. GW101-3H11 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.39 Ac3H11_4050 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.37 GFF572 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Castellaniella sp019104865 MT123 0.43 ABCV34_RS03570 ATP-dependent DNA helicase RecG 0.34 ABCV34_RS07975 crossover junction endodeoxyribonuclease RuvC — —
Variovorax sp. OAS795 0.41 ABID97_RS01575 ATP-dependent DNA helicase RecG 0.38 ABID97_RS06275 crossover junction endodeoxyribonuclease RuvC low > 91
Variovorax sp. SCN45 0.40 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.38 GFF4462 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) low > 127
Magnetospirillum magneticum AMB-1 0.35 AMB_RS12400 ATP-dependent DNA helicase RecG 0.32 AMB_RS16260 crossover junction endodeoxyribonuclease RuvC — —
Sinorhizobium meliloti 1021 0.35 SMc00228 ATP-dependent DNA helicase RecG 0.30 SMc03967 Holliday junction resolvase 0.28 88
Rhizobium sp. OAE497 0.35 ABIE40_RS09300 ATP-dependent DNA helicase RecG 0.30 ABIE40_RS15730 crossover junction endodeoxyribonuclease RuvC low > 107
Phocaeicola dorei CL03T12C01 0.34 ABI39_RS02470 ATP-dependent DNA helicase RecG 0.29 ABI39_RS15265 crossover junction endodeoxyribonuclease RuvC low > 72
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG 0.29 HMPREF1058_RS01800 crossover junction endodeoxyribonuclease RuvC 0.61 3
Agrobacterium fabrum C58 0.34 Atu1780 ATP-dependent DNA helicase 0.30 Atu3724 Holliday junction resolvase — —
Synechococcus elongatus PCC 7942 0.34 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG 0.19 Synpcc7942_0798 ruvC Holliday junction resolvase — —
Fusobacterium nucleatum SB010 0.34 HUW76_01465 ATP-dependent DNA helicase RecG 0.30 HUW76_02575 crossover junction endodeoxyribonuclease RuvC — —
Caulobacter crescentus NA1000 0.33 CCNA_01504 ATP-dependent DNA helicase recG 0.32 CCNA_03346 crossover junction endodeoxyribonuclease ruvC low > 66
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_01504 ATP-dependent DNA helicase recG 0.32 CCNA_03346 crossover junction endodeoxyribonuclease ruvC — —
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG 0.31 HMPREF1078_RS13315 crossover junction endodeoxyribonuclease RuvC — —
Phaeobacter inhibens DSM 17395 0.33 PGA1_c14380 ATP-dependent DNA helicase RecG 0.28 PGA1_c05850 crossover junction endodeoxyribonuclease RuvC — —
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG 0.29 HMPREF1181_RS05370 crossover junction endodeoxyribonuclease RuvC low > 56
Bacteroides thetaiotaomicron VPI-5482 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) 0.28 BT_1664 ruvC Holliday junction resolvase (RefSeq) — —
Dinoroseobacter shibae DFL-12 0.33 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.32 Dshi_1103 crossover junction endodeoxyribonuclease RuvC (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.24 Ga0059261_0822 Holliday junction endonuclease RuvC (EC 3.1.22.4) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.32 CA264_15020 DNA helicase RecG 0.34 CA264_03880 crossover junction endodeoxyribonuclease RuvC — —
Rhodopseudomonas palustris CGA009 0.30 TX73_013795 ATP-dependent DNA helicase RecG 0.26 TX73_005650 crossover junction endodeoxyribonuclease RuvC — —
Bosea sp. OAE506 0.30 ABIE41_RS15815 ATP-dependent DNA helicase RecG 0.34 ABIE41_RS09470 crossover junction endodeoxyribonuclease RuvC 0.54 3
Brevundimonas sp. GW460-12-10-14-LB2 0.29 A4249_RS04765 ATP-dependent DNA helicase RecG 0.28 A4249_RS15855 crossover junction endodeoxyribonuclease RuvC — —
Rhodospirillum rubrum S1H 0.28 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) 0.33 Rru_A1087 Crossover junction endodeoxyribonuclease RuvC (NCBI) — —

Not shown: 6 genomes with orthologs for PP_5310 only; 2 genomes with orthologs for PP_1215 only