Conservation of cofitness between HSERO_RS15630 and HSERO_RS17980 in Herbaspirillum seropedicae SmR1

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS15630 exodeoxyribonuclease III 1.0 HSERO_RS17980 GTP-binding protein 0.56 10
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS07325 exodeoxyribonuclease III 0.79 RR42_RS12810 GTP-binding protein — —
Burkholderia phytofirmans PsJN 0.65 BPHYT_RS12925 exodeoxyribonuclease III 0.79 BPHYT_RS08105 GTP-binding protein — —
Paraburkholderia graminis OAS925 0.65 ABIE53_002802 exodeoxyribonuclease-3 0.79 ABIE53_002454 GTP-binding protein — —
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS13495 exodeoxyribonuclease III 0.80 ABZR87_RS11245 translational GTPase TypA low > 80
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_00456 Exodeoxyribonuclease III 0.79 H281DRAFT_05111 GTP-binding protein — —
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS05680 exodeoxyribonuclease III 0.79 QEN71_RS23065 translational GTPase TypA — —
Dechlorosoma suillum PS 0.64 Dsui_0044 exodeoxyribonuclease III 0.71 Dsui_2423 GTP-binding protein TypA/BipA — —
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS01700 exodeoxyribonuclease III 0.80 RALBFv3_RS15715 translational GTPase TypA — —
Ralstonia solanacearum UW163 0.63 UW163_RS15010 exodeoxyribonuclease III 0.80 UW163_RS13160 translational GTPase TypA — —
Ralstonia solanacearum PSI07 0.63 RPSI07_RS15785 exodeoxyribonuclease III 0.80 RPSI07_RS17640 translational GTPase TypA low > 81
Ralstonia solanacearum GMI1000 0.63 RS_RS08025 exodeoxyribonuclease III 0.79 RS_RS06495 translational GTPase TypA — —
Castellaniella sp019104865 MT123 0.62 ABCV34_RS03115 exodeoxyribonuclease III 0.78 ABCV34_RS02140 translational GTPase TypA — —
Variovorax sp. SCN45 0.61 GFF3064 Exodeoxyribonuclease III (EC 3.1.11.2) 0.70 GFF219 GTP-binding protein TypA/BipA low > 127
Variovorax sp. OAS795 0.61 ABID97_RS09955 exodeoxyribonuclease III 0.69 ABID97_RS16470 translational GTPase TypA low > 91
Acidovorax sp. GW101-3H11 0.60 Ac3H11_4433 Exodeoxyribonuclease III (EC 3.1.11.2) 0.68 Ac3H11_2864 GTP-binding protein TypA/BipA — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF5268 Exodeoxyribonuclease III (EC 3.1.11.2) 0.69 GFF4346 GTP-binding protein TypA/BipA low > 90
Dyella japonica UNC79MFTsu3.2 0.56 ABZR86_RS14930 exodeoxyribonuclease III 0.61 ABZR86_RS20640 translational GTPase TypA low > 74
Lysobacter sp. OAE881 0.55 ABIE51_RS01755 exodeoxyribonuclease III 0.61 ABIE51_RS05990 translational GTPase TypA low > 62
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_15390 xth exodeoxyribonuclease III 0.60 OKGIIK_06470 typA translational GTPase TypA — —
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.5140.1 Exodeoxyribonuclease III (EC 3.1.11.2) 0.61 Xcc-8004.4106.1 GTP-binding protein TypA/BipA — —
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS08625 exodeoxyribonuclease III 0.60 LRK54_RS00775 translational GTPase TypA low > 59
Rhodanobacter denitrificans MT42 0.52 LRK55_RS08390 exodeoxyribonuclease III 0.60 LRK55_RS00550 translational GTPase TypA low > 63
Synechococcus elongatus PCC 7942 0.48 Synpcc7942_2607 xthA Exodeoxyribonuclease III 0.52 Synpcc7942_1525 typA GTP-binding protein TypA low > 38
Rhizobium sp. OAE497 0.44 ABIE40_RS08420 exodeoxyribonuclease III 0.52 ABIE40_RS18125 translational GTPase TypA low > 107
Azospirillum sp. SherDot2 0.42 MPMX19_04331 Exodeoxyribonuclease 0.53 MPMX19_01378 GTP-binding protein TypA/BipA — —
Azospirillum brasilense Sp245 0.41 AZOBR_RS15540 exodeoxyribonuclease III 0.53 AZOBR_RS09920 GTP-binding protein TypA — —
Rhodopseudomonas palustris CGA009 0.41 TX73_014820 exodeoxyribonuclease III 0.52 TX73_002120 translational GTPase TypA low > 86
Caulobacter crescentus NA1000 0.41 CCNA_02090 exodeoxyribonuclease III 0.50 CCNA_00778 GTP-binding protein TypA/BipA 0.54 6
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_02090 exodeoxyribonuclease III 0.50 CCNA_00778 GTP-binding protein TypA/BipA — —
Sinorhizobium meliloti 1021 0.40 SMc02077 exodeoxyribonuclease III protein 0.52 SMc03242 GTP-binding protein 0.33 48
Brevundimonas sp. GW460-12-10-14-LB2 0.39 A4249_RS02655 exodeoxyribonuclease III 0.50 A4249_RS13585 translational GTPase TypA — —
Agrobacterium fabrum C58 0.38 Atu5048 exodeoxyribonuclease III 0.53 Atu2663 GTP-binding tyrosin phosphorylated protein — —
Bosea sp. OAE506 0.38 ABIE41_RS15705 exodeoxyribonuclease III 0.52 ABIE41_RS04255 translational GTPase TypA low > 77
Pseudomonas stutzeri RCH2 0.37 Psest_1187 exodeoxyribonuclease III 0.59 Psest_3926 GTP-binding protein TypA/BipA low > 67
Dinoroseobacter shibae DFL-12 0.36 Dshi_1886 exodeoxyribonuclease III Xth (RefSeq) 0.54 Dshi_0019 GTP-binding protein TypA (RefSeq) low > 64
Rhodospirillum rubrum S1H 0.36 Rru_A1784 exodeoxyribonuclease III xth (NCBI) 0.51 Rru_A0148 GTP-binding protein TypA (NCBI) — —
Mycobacterium tuberculosis H37Rv 0.36 Rv0427c Probable exodeoxyribonuclease III protein XthA (exonuclease III) (EXO III) (AP endonuclease VI) 0.42 Rv1165 Possible GTP-binding translation elongation factor TypA (tyrosine phosphorylated protein A) (GTP-binding protein) low > 58
Pseudomonas sp. RS175 0.35 PFR28_01207 Exodeoxyribonuclease III 0.60 PFR28_04951 GTP-binding protein TypA/BipA — —
Phaeobacter inhibens DSM 17395 0.35 PGA1_c11070 exodeoxyribonuclease III 0.53 PGA1_c15300 GTP-binding protein TypA low > 62
Mucilaginibacter yixingensis YX-36 DSM 26809 0.35 ABZR88_RS19760 exodeoxyribonuclease III 0.50 ABZR88_RS00415 translational GTPase TypA — —
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_01850 exodeoxyribonuclease III 0.60 AO356_09695 GTP-binding protein TypA — —
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_3967 Exodeoxyribonuclease III (EC 3.1.11.2) 0.60 PfGW456L13_340 GTP-binding protein TypA/BipA — —
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_2237 Exodeoxyribonuclease III (EC 3.1.11.2) 0.60 Pf6N2E2_3818 GTP-binding protein TypA/BipA — —
Pedobacter sp. GW460-11-11-14-LB5 0.34 CA265_RS16670 exodeoxyribonuclease III 0.49 CA265_RS23750 translational GTPase TypA low > 88
Pseudomonas putida KT2440 0.34 PP_2707 putative Exodeoxyribonuclease III 0.60 PP_5044 ribosome associated GTPase — —
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_38 Exodeoxyribonuclease III (EC 3.1.11.2) 0.47 Pf1N1B4_1601 GTP-binding protein TypA/BipA — —
Pseudomonas sp. S08-1 0.33 OH686_23775 exodeoxyribonuclease III 0.59 OH686_10610 GTP-binding protein TypA/BipA low > 80
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_3499 exodeoxyribonuclease III 0.55 Ga0059261_0817 GTP-binding protein TypA/BipA low > 68
Vibrio cholerae E7946 ATCC 55056 0.31 CSW01_09315 exodeoxyribonuclease III 0.62 CSW01_13840 translational GTPase TypA low > 62
Shewanella loihica PV-4 0.31 Shew_2262 exonuclease III (RefSeq) 0.61 Shew_3553 GTP-binding protein TypA (RefSeq) — —
Enterobacter sp. TBS_079 0.30 MPMX20_01864 Exodeoxyribonuclease III 0.62 MPMX20_04594 GTP-binding protein TypA/BipA — —
Pectobacterium carotovorum WPP14 0.30 HER17_RS11085 exodeoxyribonuclease III 0.61 HER17_RS21425 ribosome-dependent GTPase TypA low > 75
Rahnella sp. WP5 0.29 EX31_RS06330 exodeoxyribonuclease III 0.60 EX31_RS15865 ribosome-dependent GTPase TypA low > 89
Kangiella aquimarina DSM 16071 0.29 B158DRAFT_1291 exodeoxyribonuclease III 0.60 B158DRAFT_0725 GTP-binding protein TypA/BipA low > 40
Klebsiella michiganensis M5al 0.29 BWI76_RS11665 exodeoxyribonuclease III 0.61 BWI76_RS00410 translational GTPase TypA — —
Escherichia coli ECOR38 0.29 HEPCGN_05265 xthA exodeoxyribonuclease III 0.62 HEPCGN_12720 typA ribosome-dependent GTPase TypA low > 87
Serratia liquefaciens MT49 0.29 IAI46_14290 exodeoxyribonuclease III 0.60 IAI46_24945 ribosome-dependent GTPase TypA low > 86
Dickeya dadantii 3937 0.29 DDA3937_RS10310 exodeoxyribonuclease III 0.61 DDA3937_RS00140 ribosome-dependent GTPase TypA low > 74
Escherichia fergusonii Becca 0.29 EFB2_02244 Exodeoxyribonuclease III 0.62 EFB2_04745 GTP-binding protein TypA/BipA low > 86
Escherichia coli ECRC99 0.29 KEDOAH_01210 xthA exodeoxyribonuclease III 0.62 KEDOAH_14060 typA ribosome-dependent GTPase TypA — —
Escherichia coli ECRC98 0.29 JDDGAC_01475 xthA exodeoxyribonuclease III 0.62 JDDGAC_17715 typA ribosome-dependent GTPase TypA low > 86
Escherichia coli ECRC102 0.29 NIAGMN_01165 xthA exodeoxyribonuclease III 0.62 NIAGMN_11845 typA ribosome-dependent GTPase TypA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_01983 Exodeoxyribonuclease III 0.62 OHPLBJKB_04181 GTP-binding protein TypA/BipA low > 73
Escherichia coli BW25113 0.29 b1749 xthA exonuclease III (NCBI) 0.62 b3871 bipA GTP-binding protein (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF3490 Exodeoxyribonuclease III (EC 3.1.11.2) 0.62 GFF2223 GTP-binding protein TypA/BipA low > 78
Escherichia coli ECRC100 0.29 OKFHMN_26900 xthA exodeoxyribonuclease III 0.62 OKFHMN_14090 typA ribosome-dependent GTPase TypA low > 80
Escherichia coli ECRC62 0.29 BNILDI_16200 xthA exodeoxyribonuclease III 0.62 BNILDI_05310 typA ribosome-dependent GTPase TypA low > 75
Escherichia coli ECOR27 0.29 NOLOHH_17415 xthA exodeoxyribonuclease III 0.62 NOLOHH_06220 typA ribosome-dependent GTPase TypA low > 75
Escherichia coli BL21 0.29 ECD_01718 exonuclease III 0.62 ECD_03756 GTP-binding protein — —
Escherichia coli ECRC101 0.29 MCAODC_18510 xthA exodeoxyribonuclease III 0.62 MCAODC_04590 typA ribosome-dependent GTPase TypA low > 87
Dickeya dianthicola ME23 0.29 DZA65_RS10795 exodeoxyribonuclease III 0.61 DZA65_RS22195 ribosome-dependent GTPase TypA low > 75
Enterobacter asburiae PDN3 0.29 EX28DRAFT_1753 exodeoxyribonuclease III 0.61 EX28DRAFT_4353 GTP-binding protein TypA/BipA — —
Pseudomonas fluorescens SBW25 0.29 PFLU_RS18930 exodeoxyribonuclease III 0.59 PFLU_RS01720 translational GTPase TypA — —
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS18930 exodeoxyribonuclease III 0.59 PFLU_RS01720 translational GTPase TypA — —
Escherichia coli Nissle 1917 0.28 ECOLIN_RS09750 exodeoxyribonuclease III 0.62 ECOLIN_RS22315 ribosome-dependent GTPase TypA low > 55
Shewanella oneidensis MR-1 0.28 SO3037 xth exodeoxyribonuclease III (NCBI ptt file) 0.60 SO4408 bipA virulence regulator BipA (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.28 Shewana3_1503 exonuclease III (RefSeq) 0.61 Shewana3_0301 GTP-binding protein TypA (RefSeq) low > 73
Dickeya dianthicola 67-19 0.28 HGI48_RS10320 exodeoxyribonuclease III 0.61 HGI48_RS21220 ribosome-dependent GTPase TypA low > 71
Pantoea sp. MT58 0.28 IAI47_08990 exodeoxyribonuclease III 0.61 IAI47_00465 ribosome-dependent GTPase TypA low > 76
Pseudomonas simiae WCS417 0.28 PS417_16980 exonuclease III 0.59 PS417_01665 GTP-binding protein TypA — —
Marinobacter adhaerens HP15 0.28 HP15_1776 exonuclease III 0.60 HP15_429 GTP-binding protein TypA low > 73
Erwinia tracheiphila SCR3 0.28 LU632_RS12950 xthA exodeoxyribonuclease III 0.60 LU632_RS22150 typA ribosome-dependent GTPase TypA low > 74
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_27875 exonuclease III 0.60 AO353_12180 GTP-binding protein TypA — —
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_2476 Exodeoxyribonuclease III 0.60 Psyr_4815 Small GTP-binding protein domain:GTP-binding protein TypA — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_2476 Exodeoxyribonuclease III 0.60 Psyr_4815 Small GTP-binding protein domain:GTP-binding protein TypA — —
Shewanella amazonensis SB2B 0.26 Sama_2139 exodeoxyribonuclease III (RefSeq) 0.60 Sama_3415 virulence regulator BipA (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.25 MIT1002_01652 Exodeoxyribonuclease III 0.60 MIT1002_03181 hypothetical protein low > 70

Not shown: 1 genomes with orthologs for HSERO_RS15630 only; 13 genomes with orthologs for HSERO_RS17980 only