Conservation of cofitness between Ga0059261_2764 and Ga0059261_3499 in Sphingomonas koreensis DSMZ 15582

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingomonas koreensis DSMZ 15582 1.0 Ga0059261_2764 Site-specific recombinase XerD 1.0 Ga0059261_3499 exodeoxyribonuclease III 0.39 7
Brevundimonas sp. GW460-12-10-14-LB2 0.48 A4249_RS12210 tyrosine recombinase XerC 0.57 A4249_RS05240 exodeoxyribonuclease III low > 48
Caulobacter crescentus NA1000 0.47 CCNA_00349 integrase/recombinase, XerC-CodV family 0.46 CCNA_02090 exodeoxyribonuclease III low > 66
Caulobacter crescentus NA1000 Δfur 0.47 CCNA_00349 integrase/recombinase, XerC-CodV family 0.46 CCNA_02090 exodeoxyribonuclease III — —
Dinoroseobacter shibae DFL-12 0.44 Dshi_5002 xerC hypothetical protein (NCBI) 0.49 Dshi_1886 exodeoxyribonuclease III Xth (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.44 PGA1_c05760 putative tyrosine recombinase XerC 0.51 PGA1_c11070 exodeoxyribonuclease III 0.31 24
Agrobacterium fabrum C58 0.43 Atu2628 site-specific recombinase 0.56 Atu5048 exodeoxyribonuclease III — —
Magnetospirillum magneticum AMB-1 0.43 AMB_RS21485 tyrosine recombinase XerC 0.52 AMB_RS12755 exodeoxyribonuclease III — —
Rhizobium sp. OAE497 0.42 ABIE40_RS17950 tyrosine recombinase XerC 0.60 ABIE40_RS30445 exodeoxyribonuclease III low > 107
Sinorhizobium meliloti 1021 0.42 SMc02489 site-specific tyrosine recombinase XerC 0.57 SMc00956 exodeoxyribonuclease III protein — —
Rhodopseudomonas palustris CGA009 0.42 TX73_000945 tyrosine recombinase XerC 0.54 TX73_017095 exodeoxyribonuclease III low > 86
Azospirillum brasilense Sp245 0.41 AZOBR_RS03965 tyrosine recombinase XerC 0.49 AZOBR_RS15540 exodeoxyribonuclease III — —
Bosea sp. OAE506 0.41 ABIE41_RS07870 tyrosine recombinase XerC 0.59 ABIE41_RS06625 exodeoxyribonuclease III low > 77
Rhodospirillum rubrum S1H 0.41 Rru_A1220 Phage integrase (NCBI) 0.50 Rru_A1784 exodeoxyribonuclease III xth (NCBI) — —
Azospirillum sp. SherDot2 0.40 MPMX19_02110 Tyrosine recombinase XerC 0.52 MPMX19_04331 Exodeoxyribonuclease — —
Dechlorosoma suillum PS 0.27 Dsui_0651 tyrosine recombinase XerC 0.34 Dsui_0044 exodeoxyribonuclease III low > 51
Lysobacter sp. OAE881 0.27 ABIE51_RS03035 tyrosine recombinase XerC 0.58 ABIE51_RS09210 exodeoxyribonuclease III low > 62
Paraburkholderia bryophila 376MFSha3.1 0.27 H281DRAFT_02202 integrase/recombinase XerC 0.60 H281DRAFT_03037 Exodeoxyribonuclease III (EC 3.1.11.2) — —
Burkholderia phytofirmans PsJN 0.27 BPHYT_RS01655 tyrosine recombinase XerC 0.59 BPHYT_RS29690 exodeoxyribonuclease III — —
Dyella japonica UNC79MFTsu3.2 0.27 ABZR86_RS15025 tyrosine recombinase XerC 0.33 ABZR86_RS14930 exodeoxyribonuclease III low > 74
Shewanella loihica PV-4 0.27 Shew_0325 tyrosine recombinase XerC (RefSeq) 0.26 Shew_2262 exonuclease III (RefSeq) — —
Paraburkholderia graminis OAS925 0.27 ABIE53_000426 integrase/recombinase XerC 0.59 ABIE53_005114 exodeoxyribonuclease-3 — —
Alteromonas macleodii MIT1002 0.26 MIT1002_00157 Tyrosine recombinase XerC 0.25 MIT1002_01652 Exodeoxyribonuclease III low > 70
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_12725 recombinase XerC 0.60 AO356_01850 exodeoxyribonuclease III low > 104
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_4416 Tyrosine recombinase XerC 0.59 Pf6N2E2_2237 Exodeoxyribonuclease III (EC 3.1.11.2) low > 103
Pseudomonas fluorescens FW300-N1B4 0.26 Pf1N1B4_2171 Tyrosine recombinase XerC 0.60 Pf1N1B4_38 Exodeoxyribonuclease III (EC 3.1.11.2) low > 87
Acinetobacter radioresistens SK82 0.26 MPMX26_02230 Tyrosine recombinase XerC 0.16 MPMX26_02938 Exodeoxyribonuclease — —
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_842 Tyrosine recombinase XerC 0.59 PfGW456L13_3967 Exodeoxyribonuclease III (EC 3.1.11.2) low > 87
Pseudomonas sp. RS175 0.26 PFR28_04378 Tyrosine recombinase XerC 0.60 PFR28_01207 Exodeoxyribonuclease III low > 88
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_0827 Site-specific recombinase XerD 0.23 Echvi_1056 exodeoxyribonuclease III low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.26 ABZR88_RS17800 tyrosine-type recombinase/integrase 0.63 ABZR88_RS19760 exodeoxyribonuclease III 0.44 58
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_09050 recombinase XerC 0.25 AO353_27875 exonuclease III low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_0185 tyrosine recombinase XerC subunit 0.27 Psyr_2476 Exodeoxyribonuclease III low > 86
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_0185 tyrosine recombinase XerC subunit 0.27 Psyr_2476 Exodeoxyribonuclease III low > 86
Pseudomonas putida KT2440 0.26 PP_5230 Tyrosine recombinase XerC 0.56 PP_2707 putative Exodeoxyribonuclease III low > 96
Marinobacter adhaerens HP15 0.26 HP15_250 site-specific tyrosine recombinase XerC 0.23 HP15_1776 exonuclease III low > 73
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS00355 tyrosine recombinase XerC 0.60 QEN71_RS09020 exodeoxyribonuclease III — —
Pseudomonas sp. S08-1 0.25 OH686_13785 tyrosine recombinase XerC 0.57 OH686_23775 exodeoxyribonuclease III low > 80
Rhodanobacter denitrificans MT42 0.25 LRK55_RS08300 tyrosine recombinase XerC 0.29 LRK55_RS08390 exodeoxyribonuclease III low > 63
Shewanella sp. ANA-3 0.25 Shewana3_0393 tyrosine recombinase XerC (RefSeq) 0.26 Shewana3_1503 exonuclease III (RefSeq) low > 73
Rhodanobacter sp. FW510-T8 0.25 OKGIIK_15325 xerC tyrosine recombinase XerC 0.32 OKGIIK_15390 xth exodeoxyribonuclease III — —
Bacteroides ovatus ATCC 8483 0.25 BACOVA_01050 site-specific recombinase, phage integrase family/ribosomal subunit interface protein 0.24 BACOVA_02252 exodeoxyribonuclease III low > 94
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS02835 integrase 0.61 CA265_RS16670 exodeoxyribonuclease III low > 88
Cupriavidus basilensis FW507-4G11 0.25 RR42_RS00615 recombinase XerC 0.34 RR42_RS07325 exodeoxyribonuclease III 0.40 13
Hydrogenophaga sp. GW460-11-11-14-LB1 0.25 GFF547 Tyrosine recombinase XerC 0.31 GFF5268 Exodeoxyribonuclease III (EC 3.1.11.2) low > 90
Rhodanobacter denitrificans FW104-10B01 0.25 LRK54_RS08535 tyrosine recombinase XerC 0.29 LRK54_RS08625 exodeoxyribonuclease III low > 59
Variovorax sp. SCN45 0.25 GFF4490 Site-specific tyrosine recombinase XerC 0.30 GFF3064 Exodeoxyribonuclease III (EC 3.1.11.2) low > 127
Vibrio cholerae E7946 ATCC 55056 0.25 CSW01_00650 tyrosine recombinase XerC 0.28 CSW01_09315 exodeoxyribonuclease III low > 62
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS21475 recombinase XerC 0.32 HSERO_RS15630 exodeoxyribonuclease III 0.36 2
Pantoea sp. MT58 0.25 IAI47_18400 tyrosine recombinase XerC 0.27 IAI47_08990 exodeoxyribonuclease III low > 76
Erwinia tracheiphila SCR3 0.24 LU632_RS24135 xerC tyrosine recombinase XerC 0.26 LU632_RS12950 xthA exodeoxyribonuclease III — —
Castellaniella sp019104865 MT123 0.24 ABCV34_RS13455 tyrosine recombinase XerC 0.33 ABCV34_RS03115 exodeoxyribonuclease III low > 48
Acidovorax sp. GW101-3H11 0.24 Ac3H11_1995 Tyrosine recombinase XerC 0.30 Ac3H11_4433 Exodeoxyribonuclease III (EC 3.1.11.2) — —
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS29280 tyrosine recombinase XerC 0.24 PFLU_RS18930 exodeoxyribonuclease III low > 109
Pseudomonas simiae WCS417 0.24 PS417_27595 recombinase XerC 0.25 PS417_16980 exonuclease III low > 88
Pseudomonas fluorescens SBW25 0.24 PFLU_RS29280 tyrosine recombinase XerC 0.24 PFLU_RS18930 exodeoxyribonuclease III low > 109
Bifidobacterium breve UCC2003 0.24 BBR_RS16755 site-specific tyrosine recombinase XerD 0.16 BBR_RS16630 exodeoxyribonuclease III low > 34
Bacteroides thetaiotaomicron VPI-5482 0.24 BT2742 integrase, site-specific recombinase (NCBI ptt file) 0.24 BT0630 exodeoxyribonuclease (NCBI ptt file) low > 81
Ralstonia solanacearum GMI1000 0.24 RS_RS00260 Tyrosine recombinase XerC 1 0.32 RS_RS08025 exodeoxyribonuclease III 0.33 37
Ralstonia solanacearum PSI07 0.24 RPSI07_RS23690 tyrosine recombinase XerC 0.32 RPSI07_RS15785 exodeoxyribonuclease III low > 81
Rahnella sp. WP5 0.24 EX31_RS15165 tyrosine recombinase XerC 0.28 EX31_RS06330 exodeoxyribonuclease III low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.23 GFF239 Tyrosine recombinase XerC 0.28 GFF3490 Exodeoxyribonuclease III (EC 3.1.11.2) — —
Dickeya dianthicola 67-19 0.23 HGI48_RS20045 tyrosine recombinase XerC 0.27 HGI48_RS10320 exodeoxyribonuclease III low > 71
Escherichia coli ECRC101 0.23 MCAODC_04925 xerC tyrosine recombinase XerC 0.28 MCAODC_18510 xthA exodeoxyribonuclease III — —
Escherichia coli ECRC98 0.23 JDDGAC_18045 xerC tyrosine recombinase XerC 0.28 JDDGAC_01475 xthA exodeoxyribonuclease III — —
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS00625 tyrosine recombinase XerC 0.26 HMPREF1181_RS16605 exodeoxyribonuclease III low > 56
Escherichia coli ECRC100 0.23 OKFHMN_14420 xerC tyrosine recombinase XerC 0.28 OKFHMN_26900 xthA exodeoxyribonuclease III low > 80
Variovorax sp. OAS795 0.23 ABID97_RS06150 tyrosine recombinase XerC 0.60 ABID97_RS12065 exodeoxyribonuclease III low > 91
Ralstonia solanacearum IBSBF1503 0.23 RALBFv3_RS09675 tyrosine recombinase XerC 0.33 RALBFv3_RS01700 exodeoxyribonuclease III low > 76
Escherichia coli ECRC102 0.23 NIAGMN_12175 xerC tyrosine recombinase XerC 0.28 NIAGMN_01165 xthA exodeoxyribonuclease III — —
Escherichia coli ECRC99 0.23 KEDOAH_13730 xerC tyrosine recombinase XerC 0.28 KEDOAH_01210 xthA exodeoxyribonuclease III — —
Ralstonia solanacearum UW163 0.23 UW163_RS03905 tyrosine recombinase XerC 0.33 UW163_RS15010 exodeoxyribonuclease III — —
Escherichia coli BL21 0.23 ECD_03687 site-specific tyrosine recombinase 0.28 ECD_01718 exonuclease III — —
Dickeya dianthicola ME23 0.23 DZA65_RS21090 tyrosine recombinase XerC 0.27 DZA65_RS10795 exodeoxyribonuclease III low > 75
Klebsiella michiganensis M5al 0.23 BWI76_RS01210 tyrosine recombinase XerC 0.27 BWI76_RS11665 exodeoxyribonuclease III low > 92
Enterobacter asburiae PDN3 0.23 EX28DRAFT_4480 tyrosine recombinase XerC 0.29 EX28DRAFT_1753 exodeoxyribonuclease III — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.23 OHPLBJKB_04239 Tyrosine recombinase XerC 0.28 OHPLBJKB_01983 Exodeoxyribonuclease III low > 73
Escherichia coli Nissle 1917 0.23 ECOLIN_RS21875 tyrosine recombinase XerC 0.28 ECOLIN_RS09750 exodeoxyribonuclease III low > 55
Escherichia coli ECRC62 0.23 BNILDI_04985 xerC tyrosine recombinase XerC 0.28 BNILDI_16200 xthA exodeoxyribonuclease III low > 75
Escherichia coli ECOR38 0.23 HEPCGN_13125 xerC tyrosine recombinase XerC 0.27 HEPCGN_05265 xthA exodeoxyribonuclease III low > 87
Escherichia fergusonii Becca 0.23 EFB2_04826 Tyrosine recombinase XerC 0.28 EFB2_02244 Exodeoxyribonuclease III low > 86
Escherichia coli BW25113 0.23 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.28 b1749 xthA exonuclease III (NCBI) low > 76
Escherichia coli ECOR27 0.23 NOLOHH_06550 xerC tyrosine recombinase XerC 0.28 NOLOHH_17415 xthA exodeoxyribonuclease III low > 75
Pseudomonas stutzeri RCH2 0.23 Psest_3767 tyrosine recombinase XerC 0.64 Psest_1187 exodeoxyribonuclease III low > 67
Phocaeicola vulgatus CL09T03C04 0.22 HMPREF1058_RS09445 tyrosine-type recombinase/integrase 0.24 HMPREF1058_RS17100 exodeoxyribonuclease III low > 67
Mycobacterium tuberculosis H37Rv 0.22 Rv2894c Probable integrase/recombinase XerC 0.29 Rv0427c Probable exodeoxyribonuclease III protein XthA (exonuclease III) (EXO III) (AP endonuclease VI) — —
Ralstonia sp. UNC404CL21Col 0.22 ABZR87_RS05065 tyrosine recombinase XerC 0.33 ABZR87_RS13495 exodeoxyribonuclease III 0.40 77
Pontibacter actiniarum KMM 6156, DSM 19842 0.22 CA264_19035 integrase 0.24 CA264_17265 exodeoxyribonuclease III — —
Parabacteroides merdae CL09T00C40 0.22 HMPREF1078_RS10885 tyrosine recombinase XerC 0.24 HMPREF1078_RS00480 exodeoxyribonuclease III low > 61
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS03835 tyrosine-type recombinase/integrase 0.24 ABI39_RS13020 exodeoxyribonuclease III — —
Desulfovibrio vulgaris Miyazaki F 0.21 DvMF_0767 integrase family protein (RefSeq) 0.15 DvMF_2456 exodeoxyribonuclease III (RefSeq) low > 51

Not shown: 2 genomes with orthologs for Ga0059261_2764 only; 10 genomes with orthologs for Ga0059261_3499 only