Conservation of cofitness between Ga0059261_2764 and Ga0059261_0204 in Sphingomonas koreensis DSMZ 15582

91 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingomonas koreensis DSMZ 15582 1.0 Ga0059261_2764 Site-specific recombinase XerD 1.0 Ga0059261_0204 protein RecA 0.39 8
Brevundimonas sp. GW460-12-10-14-LB2 0.48 A4249_RS12210 tyrosine recombinase XerC 0.74 A4249_RS12615 recombinase RecA low > 48
Caulobacter crescentus NA1000 Δfur 0.47 CCNA_00349 integrase/recombinase, XerC-CodV family 0.70 CCNA_01141 RecA protein — —
Caulobacter crescentus NA1000 0.47 CCNA_00349 integrase/recombinase, XerC-CodV family 0.70 CCNA_01141 RecA protein 0.47 24
Dinoroseobacter shibae DFL-12 0.44 Dshi_5002 xerC hypothetical protein (NCBI) 0.67 Dshi_1643 recA protein (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.44 PGA1_c05760 putative tyrosine recombinase XerC 0.72 PGA1_c15260 protein recA (recombinase A) 0.58 1
Agrobacterium fabrum C58 0.43 Atu2628 site-specific recombinase 0.74 Atu1874 RecA protein — —
Magnetospirillum magneticum AMB-1 0.43 AMB_RS21485 tyrosine recombinase XerC 0.75 AMB_RS03205 DNA recombination/repair protein RecA — —
Rhizobium sp. OAE497 0.42 ABIE40_RS17950 tyrosine recombinase XerC 0.74 ABIE40_RS10320 recombinase RecA low > 107
Sinorhizobium meliloti 1021 0.42 SMc02489 site-specific tyrosine recombinase XerC 0.74 SMc00760 recombinase A — —
Rhodopseudomonas palustris CGA009 0.42 TX73_000945 tyrosine recombinase XerC 0.75 TX73_019940 recombinase RecA — —
Azospirillum brasilense Sp245 0.41 AZOBR_RS03965 tyrosine recombinase XerC 0.76 AZOBR_RS11095 recombinase RecA — —
Bosea sp. OAE506 0.41 ABIE41_RS07870 tyrosine recombinase XerC 0.74 ABIE41_RS13335 recombinase RecA 0.67 6
Rhodospirillum rubrum S1H 0.41 Rru_A1220 Phage integrase (NCBI) 0.76 Rru_A2819 RecA DNA recombination protein (NCBI) — —
Azospirillum sp. SherDot2 0.40 MPMX19_02110 Tyrosine recombinase XerC 0.76 MPMX19_00869 Protein RecA — —
Dechlorosoma suillum PS 0.27 Dsui_0651 tyrosine recombinase XerC 0.62 Dsui_0707 protein RecA 0.37 6
Lysobacter sp. OAE881 0.27 ABIE51_RS03035 tyrosine recombinase XerC 0.65 ABIE51_RS07800 recombinase RecA low > 62
Paraburkholderia bryophila 376MFSha3.1 0.27 H281DRAFT_02202 integrase/recombinase XerC 0.67 H281DRAFT_04208 RecA protein — —
Burkholderia phytofirmans PsJN 0.27 BPHYT_RS01655 tyrosine recombinase XerC 0.66 BPHYT_RS16360 recombinase RecA — —
Dyella japonica UNC79MFTsu3.2 0.27 ABZR86_RS15025 tyrosine recombinase XerC 0.64 ABZR86_RS00660 recombinase RecA 0.65 12
Paraburkholderia graminis OAS925 0.27 ABIE53_000426 integrase/recombinase XerC 0.67 ABIE53_003448 recombination protein RecA — —
Shewanella loihica PV-4 0.27 Shew_0325 tyrosine recombinase XerC (RefSeq) 0.66 Shew_1215 recA recombinase A (RefSeq) low > 60
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_12725 recombinase XerC 0.66 AO356_05670 recombinase RecA 0.57 5
Alteromonas macleodii MIT1002 0.26 MIT1002_00157 Tyrosine recombinase XerC 0.68 MIT1002_00955 Recombinase A low > 70
Acinetobacter radioresistens SK82 0.26 MPMX26_02230 Tyrosine recombinase XerC 0.65 MPMX26_01308 Protein RecA — —
Kangiella aquimarina DSM 16071 0.26 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.68 B158DRAFT_1531 protein RecA low > 40
Pseudomonas fluorescens FW300-N1B4 0.26 Pf1N1B4_2171 Tyrosine recombinase XerC 0.67 Pf1N1B4_5514 RecA protein low > 87
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_842 Tyrosine recombinase XerC 0.67 PfGW456L13_4668 RecA protein 0.28 48
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_4416 Tyrosine recombinase XerC 0.66 Pf6N2E2_2993 RecA protein — —
Pseudomonas sp. RS175 0.26 PFR28_04378 Tyrosine recombinase XerC 0.66 PFR28_00472 Protein RecA low > 88
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_0185 tyrosine recombinase XerC subunit 0.67 Psyr_1378 RecA protein low > 86
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_0827 Site-specific recombinase XerD 0.61 Echvi_0044 protein RecA 0.33 1
Mucilaginibacter yixingensis YX-36 DSM 26809 0.26 ABZR88_RS17800 tyrosine-type recombinase/integrase 0.62 ABZR88_RS16740 recombinase RecA low > 71
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_09050 recombinase XerC 0.66 AO353_16805 recombinase RecA 0.46 5
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_0185 tyrosine recombinase XerC subunit 0.67 Psyr_1378 RecA protein 0.34 27
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS00355 tyrosine recombinase XerC 0.66 QEN71_RS02335 recombinase RecA — —
Pseudomonas putida KT2440 0.26 PP_5230 Tyrosine recombinase XerC 0.67 PP_1629 Protein RecA 0.40 9
Marinobacter adhaerens HP15 0.26 HP15_250 site-specific tyrosine recombinase XerC 0.67 HP15_1048 recombinase A low > 73
Pseudomonas sp. S08-1 0.25 OH686_13785 tyrosine recombinase XerC 0.68 OH686_18205 protein RecA low > 80
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.847.1 Site-specific tyrosine recombinase 0.64 Xcc-8004.3111.1 RecA protein — —
Shewanella sp. ANA-3 0.25 Shewana3_0393 tyrosine recombinase XerC (RefSeq) 0.65 Shewana3_1126 recA recombinase A (RefSeq) low > 73
Rhodanobacter denitrificans MT42 0.25 LRK55_RS08300 tyrosine recombinase XerC 0.66 LRK55_RS14695 recombinase RecA low > 63
Bacteroides ovatus ATCC 8483 0.25 BACOVA_01050 site-specific recombinase, phage integrase family/ribosomal subunit interface protein 0.60 BACOVA_05402 RecA protein low > 94
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS02835 integrase 0.61 CA265_RS00600 recombinase RecA 0.41 16
Rhodanobacter sp. FW510-T8 0.25 OKGIIK_15325 xerC tyrosine recombinase XerC 0.66 OKGIIK_03740 recA recombinase RecA — —
Cupriavidus basilensis FW507-4G11 0.25 RR42_RS00615 recombinase XerC 0.60 RR42_RS03080 recombinase RecA 0.41 9
Hydrogenophaga sp. GW460-11-11-14-LB1 0.25 GFF547 Tyrosine recombinase XerC 0.60 GFF2500 RecA protein 0.68 5
Variovorax sp. SCN45 0.25 GFF4490 Site-specific tyrosine recombinase XerC 0.61 GFF5390 RecA protein low > 127
Pantoea sp. MT58 0.25 IAI47_18400 tyrosine recombinase XerC 0.66 IAI47_04300 recombinase RecA 0.41 16
Vibrio cholerae E7946 ATCC 55056 0.25 CSW01_00650 tyrosine recombinase XerC 0.66 CSW01_02875 DNA recombination/repair protein RecA 0.70 15
Rhodanobacter denitrificans FW104-10B01 0.25 LRK54_RS08535 tyrosine recombinase XerC 0.66 LRK54_RS14980 recombinase RecA low > 59
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS21475 recombinase XerC 0.61 HSERO_RS03270 protein RecA low > 78
Erwinia tracheiphila SCR3 0.24 LU632_RS24135 xerC tyrosine recombinase XerC 0.67 LU632_RS15735 recA recombinase RecA — —
Acidovorax sp. GW101-3H11 0.24 Ac3H11_1995 Tyrosine recombinase XerC 0.61 Ac3H11_1255 RecA protein — —
Castellaniella sp019104865 MT123 0.24 ABCV34_RS13455 tyrosine recombinase XerC 0.65 ABCV34_RS04460 recombinase RecA low > 48
Pseudomonas fluorescens SBW25 0.24 PFLU_RS29280 tyrosine recombinase XerC 0.67 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS29280 tyrosine recombinase XerC 0.67 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas simiae WCS417 0.24 PS417_27595 recombinase XerC 0.67 PS417_05815 recombinase RecA 0.35 15
Bacteroides thetaiotaomicron VPI-5482 0.24 BT2742 integrase, site-specific recombinase (NCBI ptt file) 0.60 BT4610 RecA (NCBI ptt file) 0.34 70
Bifidobacterium breve UCC2003 0.24 BBR_RS16755 site-specific tyrosine recombinase XerD 0.64 BBR_RS16530 recombinase RecA 0.71 15
Ralstonia solanacearum GMI1000 0.24 RS_RS00260 Tyrosine recombinase XerC 1 0.61 RS_RS02760 DNA recombination/repair protein RecA — —
Ralstonia solanacearum PSI07 0.24 RPSI07_RS23690 tyrosine recombinase XerC 0.61 RPSI07_RS21260 recombinase RecA low > 81
Rahnella sp. WP5 0.24 EX31_RS15165 tyrosine recombinase XerC 0.65 EX31_RS07800 recombinase RecA low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.23 GFF239 Tyrosine recombinase XerC 0.65 GFF4693 RecA protein — —
Dickeya dianthicola 67-19 0.23 HGI48_RS20045 tyrosine recombinase XerC 0.65 HGI48_RS16355 recombinase RecA low > 71
Escherichia coli ECRC101 0.23 MCAODC_04925 xerC tyrosine recombinase XerC 0.65 MCAODC_11230 recA recombinase RecA — —
Escherichia coli ECRC102 0.23 NIAGMN_12175 xerC tyrosine recombinase XerC 0.65 NIAGMN_18475 recA recombinase RecA — —
Escherichia coli ECRC99 0.23 KEDOAH_13730 xerC tyrosine recombinase XerC 0.65 KEDOAH_07430 recA recombinase RecA — —
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS00625 tyrosine recombinase XerC 0.60 HMPREF1181_RS11910 recombinase RecA low > 56
Escherichia coli ECRC100 0.23 OKFHMN_14420 xerC tyrosine recombinase XerC 0.65 OKFHMN_20705 recA recombinase RecA — —
Ralstonia solanacearum UW163 0.23 UW163_RS03905 tyrosine recombinase XerC 0.61 UW163_RS01625 recombinase RecA — —
Ralstonia solanacearum IBSBF1503 0.23 RALBFv3_RS09675 tyrosine recombinase XerC 0.61 RALBFv3_RS12010 recombinase RecA 0.37 18
Variovorax sp. OAS795 0.23 ABID97_RS06150 tyrosine recombinase XerC 0.60 ABID97_RS02275 recombinase RecA 0.67 3
Escherichia coli ECRC98 0.23 JDDGAC_18045 xerC tyrosine recombinase XerC 0.65 JDDGAC_24370 recA recombinase RecA — —
Dickeya dianthicola ME23 0.23 DZA65_RS21090 tyrosine recombinase XerC 0.65 DZA65_RS17450 recombinase RecA — —
Escherichia coli BL21 0.23 ECD_03687 site-specific tyrosine recombinase 0.65 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor low > 61
Klebsiella michiganensis M5al 0.23 BWI76_RS01210 tyrosine recombinase XerC 0.65 BWI76_RS22180 recombinase RecA — —
Enterobacter asburiae PDN3 0.23 EX28DRAFT_4480 tyrosine recombinase XerC 0.65 EX28DRAFT_2785 protein RecA — —
Pseudomonas stutzeri RCH2 0.23 Psest_3767 tyrosine recombinase XerC 0.67 Psest_2872 protein RecA 0.39 4
Escherichia coli ECOR27 0.23 NOLOHH_06550 xerC tyrosine recombinase XerC 0.65 NOLOHH_12545 recA recombinase RecA low > 75
Escherichia coli ECOR38 0.23 HEPCGN_13125 xerC tyrosine recombinase XerC 0.65 HEPCGN_19900 recA recombinase RecA low > 87
Escherichia coli Nissle 1917 0.23 ECOLIN_RS21875 tyrosine recombinase XerC 0.65 ECOLIN_RS15060 recombinase RecA — —
Escherichia coli ECRC62 0.23 BNILDI_04985 xerC tyrosine recombinase XerC 0.65 BNILDI_11105 recA recombinase RecA low > 75
Escherichia fergusonii Becca 0.23 EFB2_04826 Tyrosine recombinase XerC 0.65 EFB2_01225 Protein RecA low > 86
Escherichia coli BW25113 0.23 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.65 b2699 recA recombinase A (NCBI) 0.54 15
Escherichia coli HS(pFamp)R (ATCC 700891) 0.23 OHPLBJKB_04239 Tyrosine recombinase XerC 0.65 OHPLBJKB_01035 Protein RecA low > 73
Pontibacter actiniarum KMM 6156, DSM 19842 0.22 CA264_19035 integrase 0.65 CA264_19695 DNA recombination/repair protein RecA — —
Ralstonia sp. UNC404CL21Col 0.22 ABZR87_RS05065 tyrosine recombinase XerC 0.61 ABZR87_RS07965 recombinase RecA 0.67 1
Phocaeicola vulgatus CL09T03C04 0.22 HMPREF1058_RS09445 tyrosine-type recombinase/integrase 0.60 HMPREF1058_RS15965 recombinase RecA 0.38 49
Parabacteroides merdae CL09T00C40 0.22 HMPREF1078_RS10885 tyrosine recombinase XerC 0.59 HMPREF1078_RS00095 recombinase RecA low > 61
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS03835 tyrosine-type recombinase/integrase 0.60 ABI39_RS11930 recombinase RecA — —
Desulfovibrio vulgaris Miyazaki F 0.21 DvMF_0767 integrase family protein (RefSeq) 0.59 DvMF_0876 recA recombinase A (RefSeq) low > 51

Not shown: 1 genomes with orthologs for Ga0059261_2764 only; 9 genomes with orthologs for Ga0059261_0204 only