Conservation of cofitness between Psest_1242 and Psest_0691 in Pseudomonas stutzeri RCH2

91 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_1242 tRNA-guanine transglycosylase, queuosine-34-forming 1.0 Psest_0691 ribonuclease R 0.33 6
Pseudomonas sp. S08-1 0.93 OH686_17430 tRNA-guanine transglycosylase 0.81 OH686_15910 ribonuclease R low > 80
Pseudomonas syringae pv. syringae B728a 0.92 Psyr_1228 tRNA-guanine transglycosylase 0.81 Psyr_0579 RNAse R — —
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_4882 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.81 PfGW456L13_144 3'-to-5' exoribonuclease RNase R low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.92 Psyr_1228 tRNA-guanine transglycosylase 0.81 Psyr_0579 RNAse R — —
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_15790 queuine tRNA-ribosyltransferase 0.81 AO353_13200 exoribonuclease R — —
Pseudomonas sp. RS175 0.92 PFR28_00277 Queuine tRNA-ribosyltransferase 0.81 PFR28_05130 Ribonuclease R 0.30 32
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_3006 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.81 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R low > 87
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_06690 queuine tRNA-ribosyltransferase 0.80 AO356_08610 exoribonuclease R low > 104
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3198 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.80 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R low > 103
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.80 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas simiae WCS417 0.90 PS417_23245 queuine tRNA-ribosyltransferase 0.80 PS417_02555 exoribonuclease R — —
Pseudomonas fluorescens SBW25 0.90 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.80 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas putida KT2440 0.89 PP_0833 queuine tRNA-ribosyltransferase 0.78 PP_4880 exoribonuclease R 0.41 4
Marinobacter adhaerens HP15 0.78 HP15_1479 queuine tRNA-ribosyltransferase 0.49 HP15_622 exoribonuclease R low > 73
Alteromonas macleodii MIT1002 0.75 MIT1002_02813 Queuine tRNA-ribosyltransferase 0.45 MIT1002_03606 Ribonuclease R low > 70
Kangiella aquimarina DSM 16071 0.74 B158DRAFT_2516 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.45 B158DRAFT_1989 ribonuclease R low > 40
Serratia liquefaciens MT49 0.74 IAI46_04840 tRNA guanosine(34) transglycosylase Tgt 0.46 IAI46_01660 ribonuclease R low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF4305 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.48 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 0.79 29
Rahnella sp. WP5 0.73 EX31_RS22095 tRNA guanosine(34) transglycosylase Tgt 0.47 EX31_RS08785 ribonuclease R low > 89
Enterobacter asburiae PDN3 0.73 EX28DRAFT_2565 tRNA-guanine transglycosylase 0.47 EX28DRAFT_3376 ribonuclease R low > 76
Enterobacter sp. TBS_079 0.73 MPMX20_00997 Queuine tRNA-ribosyltransferase 0.47 MPMX20_00460 Ribonuclease R low > 85
Klebsiella michiganensis M5al 0.73 BWI76_RS06300 tRNA guanosine(34) transglycosylase Tgt 0.47 BWI76_RS02575 exoribonuclease R — —
Shewanella amazonensis SB2B 0.73 Sama_2193 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.44 Sama_3067 exoribonuclease II (RefSeq) low > 62
Shewanella sp. ANA-3 0.73 Shewana3_1435 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.47 Shewana3_0697 RNAse R (RefSeq) low > 73
Acinetobacter radioresistens SK82 0.73 MPMX26_00438 Queuine tRNA-ribosyltransferase 0.37 MPMX26_02684 Ribonuclease R low > 36
Dickeya dadantii 3937 0.73 DDA3937_RS05470 tRNA guanosine(34) transglycosylase Tgt 0.45 DDA3937_RS17260 ribonuclease R low > 74
Dickeya dianthicola 67-19 0.72 HGI48_RS05530 tRNA guanosine(34) transglycosylase Tgt 0.46 HGI48_RS17315 ribonuclease R low > 71
Shewanella oneidensis MR-1 0.72 SO3113 tgt queuine tRNA-ribosyltransferase (NCBI ptt file) 0.46 SO3935 vacB ribonuclease R (NCBI ptt file) low > 76
Dickeya dianthicola ME23 0.72 DZA65_RS05855 tRNA guanosine(34) transglycosylase Tgt 0.46 DZA65_RS18405 ribonuclease R low > 75
Escherichia coli Nissle 1917 0.72 ECOLIN_RS02445 tRNA guanosine(34) transglycosylase Tgt 0.48 ECOLIN_RS24265 ribonuclease R — —
Escherichia coli ECRC101 0.72 OKFHMN_08505 tgt tRNA guanosine(34) transglycosylase Tgt 0.48 OKFHMN_12220 rnr ribonuclease R — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_03270 Queuine tRNA-ribosyltransferase 0.48 OHPLBJKB_03863 Ribonuclease R low > 73
Shewanella loihica PV-4 0.72 Shew_2337 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.48 Shew_3289 ribonuclease R (RefSeq) low > 60
Escherichia coli ECRC99 0.72 KEDOAH_19460 tgt tRNA guanosine(34) transglycosylase Tgt 0.48 KEDOAH_15935 rnr ribonuclease R — —
Escherichia coli ECOR27 0.72 NOLOHH_01440 tgt tRNA guanosine(34) transglycosylase Tgt 0.48 NOLOHH_04485 rnr ribonuclease R low > 57
Escherichia coli ECRC101 0.72 MCAODC_27730 tgt tRNA guanosine(34) transglycosylase Tgt 0.48 MCAODC_02735 rnr ribonuclease R — —
Escherichia coli BW25113 0.72 b0406 tgt queuine tRNA-ribosyltransferase (NCBI) 0.48 b4179 vacB putative enzyme (VIMSS) low > 76
Escherichia coli ECRC62 0.72 BNILDI_22855 tgt tRNA guanosine(34) transglycosylase Tgt 0.48 BNILDI_07005 rnr ribonuclease R — —
Escherichia fergusonii Becca 0.72 EFB2_03651 Queuine tRNA-ribosyltransferase 0.48 EFB2_04356 Ribonuclease R low > 86
Escherichia coli ECRC102 0.72 NIAGMN_06560 tgt tRNA guanosine(34) transglycosylase Tgt 0.48 NIAGMN_10070 rnr ribonuclease R — —
Escherichia coli ECRC98 0.72 JDDGAC_12160 tgt tRNA guanosine(34) transglycosylase Tgt 0.48 JDDGAC_15860 rnr ribonuclease R — —
Escherichia coli BL21 0.72 ECD_00354 tRNA-guanine transglycosylase 0.48 ECD_04046 exoribonuclease R, RNase R low > 60
Escherichia coli ECOR38 0.72 HEPCGN_07145 tgt tRNA guanosine(34) transglycosylase Tgt 0.48 HEPCGN_10450 rnr ribonuclease R low > 85
Pectobacterium carotovorum WPP14 0.72 HER17_RS15990 tRNA guanosine(34) transglycosylase Tgt 0.46 HER17_RS03835 ribonuclease R low > 75
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_03850 tRNA guanosine(34) transglycosylase Tgt 0.46 CSW01_13155 ribonuclease R low > 62
Pantoea sp. MT58 0.71 IAI47_14805 tRNA guanosine(34) transglycosylase Tgt 0.47 IAI47_02625 ribonuclease R low > 76
Erwinia tracheiphila SCR3 0.70 LU632_RS18500 tgt tRNA guanosine(34) transglycosylase Tgt 0.47 LU632_RS21750 rnr ribonuclease R low > 74
Lysobacter sp. OAE881 0.69 ABIE51_RS15020 tRNA guanosine(34) transglycosylase Tgt 0.40 ABIE51_RS07475 ribonuclease R low > 62
Dechlorosoma suillum PS 0.68 Dsui_3323 tRNA-guanine transglycosylase, queuosine-34-forming 0.45 Dsui_3128 ribonuclease R low > 51
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.2168.1 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.39 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R low > 74
Dyella japonica UNC79MFTsu3.2 0.65 ABZR86_RS09540 tRNA guanosine(34) transglycosylase Tgt 0.41 ABZR86_RS08270 ribonuclease R 0.43 60
Rhodanobacter denitrificans FW104-10B01 0.65 LRK54_RS03130 tRNA guanosine(34) transglycosylase Tgt 0.41 LRK54_RS00495 ribonuclease R low > 59
Rhodanobacter denitrificans MT42 0.65 LRK55_RS02880 tRNA guanosine(34) transglycosylase Tgt 0.41 LRK55_RS00235 ribonuclease R low > 63
Rhodanobacter sp. FW510-T8 0.65 OKGIIK_10000 tgt tRNA guanosine(34) transglycosylase Tgt 0.41 OKGIIK_06755 rnr ribonuclease R low > 52
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS06175 queuine tRNA-ribosyltransferase 0.42 HSERO_RS09290 ribonuclease R low > 78
Castellaniella sp019104865 MT123 0.64 ABCV34_RS15365 tRNA guanosine(34) transglycosylase Tgt 0.39 ABCV34_RS06625 ribonuclease R low > 48
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS17400 queuine tRNA-ribosyltransferase 0.43 RR42_RS13065 ribonuclease R low > 128
Paraburkholderia sabiae LMG 24235 0.61 QEN71_RS26640 tRNA guanosine(34) transglycosylase Tgt 0.43 QEN71_RS22925 ribonuclease R low > 153
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS01280 tRNA guanosine(34) transglycosylase Tgt 0.42 ABZR87_RS10985 ribonuclease R low > 80
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_04670 tRNA-guanine transglycosylase 0.42 H281DRAFT_00712 RNAse R low > 103
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS03410 queuine tRNA-ribosyltransferase 0.42 BPHYT_RS08455 ribonuclease R low > 109
Ralstonia solanacearum GMI1000 0.60 RS_RS13575 tRNA guanosine(34) transglycosylase Tgt 0.42 RS_RS06155 ribonuclease R low > 80
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS05685 tRNA guanosine(34) transglycosylase Tgt 0.42 RALBFv3_RS15345 ribonuclease R low > 76
Ralstonia solanacearum UW163 0.59 UW163_RS07940 tRNA guanosine(34) transglycosylase Tgt 0.42 UW163_RS12810 ribonuclease R — —
Variovorax sp. OAS795 0.59 ABID97_RS01595 tRNA guanosine(34) transglycosylase Tgt 0.36 ABID97_RS17200 ribonuclease R low > 91
Ralstonia solanacearum PSI07 0.58 RPSI07_RS11615 tRNA guanosine(34) transglycosylase Tgt 0.42 RPSI07_RS18030 ribonuclease R low > 81
Rhodospirillum rubrum S1H 0.54 Rru_A0280 Queuine tRNA-ribosyltransferase (NCBI) 0.23 Rru_A3203 ribonuclease R (NCBI) low > 58
Phaeobacter inhibens DSM 17395 0.54 PGA1_c20570 queuine tRNA-ribosyltransferase Tgt 0.20 PGA1_c36430 putative ribonuclease R low > 62
Azospirillum sp. SherDot2 0.53 MPMX19_01697 Queuine tRNA-ribosyltransferase 0.23 MPMX19_01812 Ribonuclease R low > 112
Dinoroseobacter shibae DFL-12 0.53 Dshi_2346 queuine tRNA-ribosyltransferase (RefSeq) 0.17 Dshi_0015 ribonuclease R (RefSeq) low > 64
Magnetospirillum magneticum AMB-1 0.52 AMB_RS03090 tRNA guanosine(34) transglycosylase Tgt 0.23 AMB_RS04465 ribonuclease R low > 64
Azospirillum brasilense Sp245 0.51 AZOBR_RS06295 queuine tRNA-ribosyltransferase 0.25 AZOBR_RS16165 ribonuclease R low > 97
Sphingomonas koreensis DSMZ 15582 0.51 Ga0059261_1017 tRNA-guanine transglycosylase 0.18 Ga0059261_3266 ribonuclease R low > 68
Fusobacterium nucleatum SB010 0.51 HUW76_09025 tRNA guanosine(34) transglycosylase Tgt 0.21 HUW76_06085 ribonuclease R low > 35
Desulfovibrio vulgaris Hildenborough JW710 0.51 DVU0726 tgt queuine tRNA-ribosyltransferase (TIGR) 0.23 DVU2467 rnr ribonuclease R (TIGR) low > 55
Sinorhizobium meliloti 1021 0.51 SMc01206 queuine tRNA-ribosyltransferase 0.24 SMc01365 exoribonuclease II protein low > 103
Rhizobium sp. OAE497 0.51 ABIE40_RS09435 tRNA guanosine(34) transglycosylase Tgt 0.24 ABIE40_RS07350 ribonuclease R low > 107
Bosea sp. OAE506 0.50 ABIE41_RS18290 tRNA guanosine(34) transglycosylase Tgt 0.19 ABIE41_RS18140 ribonuclease R low > 77
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_01659 queuine tRNA-ribosyltransferase 0.22 CCNA_02537 ribonuclease R 0.66 5
Caulobacter crescentus NA1000 0.50 CCNA_01659 queuine tRNA-ribosyltransferase 0.22 CCNA_02537 ribonuclease R low > 66
Agrobacterium fabrum C58 0.49 Atu1677 queuine tRNA-ribosyltransferase 0.24 Atu1303 exoribonuclease low > 89
Rhodopseudomonas palustris CGA009 0.49 TX73_013485 tRNA guanosine(34) transglycosylase Tgt 0.21 TX73_016160 ribonuclease R low > 86
Brevundimonas sp. GW460-12-10-14-LB2 0.49 A4249_RS02905 tRNA guanosine(34) transglycosylase Tgt 0.22 A4249_RS08325 ribonuclease R low > 48
Echinicola vietnamensis KMM 6221, DSM 17526 0.45 Echvi_2049 tRNA-guanine transglycosylase, queuosine-34-forming 0.22 Echvi_0669 ribonuclease R — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.45 ABZR88_RS13980 tRNA guanosine(34) transglycosylase Tgt 0.22 ABZR88_RS04270 ribonuclease R low > 71
Pontibacter actiniarum KMM 6156, DSM 19842 0.44 CA264_00655 tRNA-guanine(34) transglycosylase 0.22 CA264_17355 ribonuclease R low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.44 CA265_RS13030 tRNA guanosine(34) transglycosylase Tgt 0.22 CA265_RS10530 ribonuclease R low > 88
Parabacteroides merdae CL09T00C40 0.44 HMPREF1078_RS01080 tRNA guanosine(34) transglycosylase Tgt 0.21 HMPREF1078_RS05885 ribonuclease R low > 61
Synechococcus elongatus PCC 7942 0.43 Synpcc7942_0455 tgt queuine tRNA-ribosyltransferase 0.13 Synpcc7942_1911 zam Cold shock protein 0.73 21
Phocaeicola dorei CL03T12C01 0.43 ABI39_RS16515 tRNA guanosine(34) transglycosylase Tgt 0.21 ABI39_RS06100 ribonuclease R low > 72
Phocaeicola vulgatus CL09T03C04 0.43 HMPREF1058_RS01215 tRNA guanosine(34) transglycosylase Tgt 0.21 HMPREF1058_RS10970 ribonuclease R low > 67

Not shown: 8 genomes with orthologs for Psest_1242 only; 1 genomes with orthologs for Psest_0691 only