| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_2285 | | ATP-dependent protease La | 1.0 | Psest_4098 | | Superfamily I DNA and RNA helicases | 0.34 | 6 |
| Pseudomonas fluorescens GW456-L13 | 0.91 | PfGW456L13_2554 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.80 | PfGW456L13_724 | | ATP-dependent DNA helicase UvrD/PcrA | 0.37 | 2 |
| Pseudomonas fluorescens FW300-N2E2 | 0.91 | Pf6N2E2_2216 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.79 | Pf6N2E2_4273 | | ATP-dependent DNA helicase UvrD/PcrA | — | — |
| Pseudomonas sp. RS175 | 0.91 | PFR28_01230 | | Lon protease | 0.79 | PFR28_04523 | | DNA helicase II | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.91 | AO356_01740 | | DNA-binding protein | 0.79 | AO356_11990 | | DNA helicase II | 0.44 | 6 |
| Pseudomonas fluorescens FW300-N2E3 | 0.91 | AO353_20185 | | DNA-binding protein | 0.79 | AO353_10055 | | DNA helicase II | 0.45 | 4 |
| Pseudomonas fluorescens FW300-N1B4 | 0.91 | Pf1N1B4_3947 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.78 | Pf1N1B4_2005 | | ATP-dependent DNA helicase UvrD/PcrA | — | — |
| Pseudomonas sp. S08-1 | 0.90 | OH686_03635 | | endopeptidase La | 0.80 | OH686_13045 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 80 |
| Pseudomonas fluorescens SBW25-INTG | 0.90 | PFLU_RS19160 | | endopeptidase La | 0.79 | PFLU_RS29900 | | DNA helicase II | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.90 | PFLU_RS19160 | | endopeptidase La | 0.79 | PFLU_RS29900 | | DNA helicase II | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.89 | Psyr_1749 | | ATP-dependent proteinase, Serine peptidase, MEROPS family S16 | 0.78 | Psyr_5065 | | ATP-dependent DNA helicase UvrD | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.89 | Psyr_1749 | | ATP-dependent proteinase, Serine peptidase, MEROPS family S16 | 0.78 | Psyr_5065 | | ATP-dependent DNA helicase UvrD | low | > 86 |
| Pseudomonas putida KT2440 | 0.88 | PP_2302 | | DNA-binding, ATP-dependent protease | 0.79 | PP_5352 | | DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex | 0.29 | 52 |
| Marinobacter adhaerens HP15 | 0.71 | HP15_2183 | | DNA-binding ATP-dependent protease La | 0.61 | HP15_3403 | | UvrD/REP helicase | low | > 73 |
| Shewanella loihica PV-4 | 0.70 | Shew_2506 | | ATP-dependent protease La (RefSeq) | 0.59 | Shew_3385 | uvrD | DNA-dependent helicase II (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.70 | SO1796 | lon | ATP-dependent protease La (NCBI ptt file) | 0.61 | SO0467 | uvrD | DNA helicase II (NCBI ptt file) | 0.44 | 18 |
| Shewanella sp. ANA-3 | 0.70 | Shewana3_2659 | | Lon-A peptidase (RefSeq) | 0.61 | Shewana3_0469 | uvrD | DNA-dependent helicase II (RefSeq) | — | — |
| Dickeya dadantii 3937 | 0.69 | DDA3937_RS05650 | | endopeptidase La | 0.61 | DDA3937_RS19880 | | DNA helicase II | low | > 74 |
| Dickeya dianthicola 67-19 | 0.69 | HGI48_RS05695 | | endopeptidase La | 0.61 | HGI48_RS20035 | | DNA helicase II | 0.59 | 69 |
| Klebsiella michiganensis M5al | 0.69 | BWI76_RS06535 | | endopeptidase La | 0.61 | BWI76_RS01220 | | DNA-dependent helicase II | 0.55 | 8 |
| Dickeya dianthicola ME23 | 0.69 | DZA65_RS06020 | | endopeptidase La | 0.61 | DZA65_RS21080 | | DNA helicase II | low | > 75 |
| Serratia liquefaciens MT49 | 0.69 | IAI46_05020 | | endopeptidase La | 0.61 | IAI46_00735 | | DNA helicase II | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.69 | HER17_RS15840 | | endopeptidase La | 0.61 | HER17_RS01360 | | DNA helicase II | — | — |
| Rahnella sp. WP5 | 0.69 | EX31_RS22255 | | endopeptidase La | 0.60 | EX31_RS15175 | | DNA helicase II | low | > 89 |
| Shewanella amazonensis SB2B | 0.69 | Sama_1226 | | endopeptidase La (RefSeq) | 0.60 | Sama_0419 | uvrD | DNA-dependent helicase II (RefSeq) | low | > 62 |
| Enterobacter sp. TBS_079 | 0.68 | MPMX20_01030 | | Lon protease | 0.61 | MPMX20_04463 | | DNA helicase II | low | > 85 |
| Erwinia tracheiphila SCR3 | 0.68 | LU632_RS18335 | lon | endopeptidase La | 0.60 | LU632_RS24125 | uvrD | DNA helicase II | — | — |
| Enterobacter asburiae PDN3 | 0.68 | EX28DRAFT_2531 | | endopeptidase La | 0.62 | EX28DRAFT_4482 | | ATP-dependent DNA helicase UvrD (EC 3.6.1.-) | low | > 76 |
| Escherichia coli ECOR38 | 0.68 | HEPCGN_06935 | lon_P403L | Lon protease | 0.62 | HEPCGN_13115 | uvrD | DNA helicase II | low | > 85 |
| Escherichia coli Nissle 1917 | 0.68 | ECOLIN_RS02635 | | endopeptidase La | 0.62 | ECOLIN_RS21885 | | DNA helicase II | 0.78 | 36 |
| Alteromonas macleodii MIT1002 | 0.68 | MIT1002_02757 | | Lon protease | 0.58 | MIT1002_00153 | | DNA helicase II | low | > 70 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.68 | OHPLBJKB_03234 | | Lon protease | 0.62 | OHPLBJKB_04237 | | DNA helicase II | 0.55 | 33 |
| Escherichia coli BW25113 | 0.68 | b0439 | lon | DNA-binding ATP-dependent protease La (NCBI) | 0.62 | b3813 | uvrD | DNA-dependent ATPase I and helicase II (NCBI) | low | > 76 |
| Pantoea sp. MT58 | 0.68 | IAI47_14645 | | endopeptidase La | 0.60 | IAI47_18390 | | DNA helicase II | — | — |
| Escherichia coli ECOR27 | 0.68 | NOLOHH_01255 | lon_P403L | Lon protease | 0.62 | NOLOHH_06540 | uvrD | DNA helicase II | low | > 57 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.68 | GFF4355 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.62 | GFF241 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 78 |
| Escherichia coli ECRC62 | 0.68 | BNILDI_22670 | lon_P403L | Lon protease | 0.62 | BNILDI_04995 | uvrD | DNA helicase II | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.68 | CSW01_09605 | | endopeptidase La | 0.60 | CSW01_01015 | | DNA helicase II | 0.74 | 43 |
| Escherichia coli BL21 | 0.68 | ECD_00391 | | DNA-binding ATP-dependent protease La | 0.62 | ECD_03689 | | DNA-dependent ATPase I and helicase II | — | — |
| Escherichia coli ECRC98 | 0.68 | JDDGAC_11975 | | Lon protease | 0.62 | JDDGAC_18035 | uvrD | DNA helicase II | — | — |
| Escherichia coli ECRC101 | 0.68 | OKFHMN_08320 | | Lon protease | 0.62 | OKFHMN_14410 | uvrD | DNA helicase II | — | — |
| Escherichia coli ECRC102 | 0.68 | NIAGMN_06375 | | Lon protease | 0.62 | NIAGMN_12165 | uvrD | DNA helicase II | — | — |
| Escherichia coli ECRC99 | 0.68 | KEDOAH_19645 | | Lon protease | 0.62 | KEDOAH_13740 | uvrD | DNA helicase II | — | — |
| Ralstonia sp. UNC404CL21Col | 0.68 | ABZR87_RS12785 | | endopeptidase La | 0.43 | ABZR87_RS15705 | | UvrD-helicase domain-containing protein | low | > 80 |
| Escherichia coli ECRC101 | 0.68 | MCAODC_27545 | | Lon protease | 0.62 | MCAODC_04915 | uvrD | DNA helicase II | — | — |
| Escherichia fergusonii Becca | 0.68 | EFB2_03618 | | Lon protease | 0.62 | EFB2_04824 | | DNA helicase II | low | > 86 |
| Ralstonia solanacearum UW163 | 0.67 | UW163_RS14650 | | endopeptidase La | 0.43 | UW163_RS09895 | | DNA-dependent helicase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.67 | RALBFv3_RS01340 | | endopeptidase La | 0.43 | RALBFv3_RS03775 | | DNA-dependent helicase | — | — |
| Ralstonia solanacearum PSI07 | 0.67 | RPSI07_RS16135 | | endopeptidase La | 0.42 | RPSI07_RS13455 | | DNA-dependent helicase | — | — |
| Ralstonia solanacearum GMI1000 | 0.67 | RS_RS08655 | | endopeptidase La | 0.43 | RS_RS11220 | | DNA-dependent helicase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.67 | QEN71_RS21975 | | endopeptidase La | 0.43 | QEN71_RS05110 | | 3'-5' exonuclease | — | — |
| Kangiella aquimarina DSM 16071 | 0.66 | B158DRAFT_1038 | | ATP-dependent protease La | 0.60 | B158DRAFT_0238 | | Superfamily I DNA and RNA helicases | low | > 40 |
| Rhodanobacter sp. FW510-T8 | 0.66 | OKGIIK_08030 | lon | endopeptidase La | 0.55 | OKGIIK_16775 | | DNA helicase | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.66 | ABZR86_RS07320 | | endopeptidase La | 0.54 | ABZR86_RS16965 | | DNA helicase II | low | > 74 |
| Lysobacter sp. OAE881 | 0.66 | ABIE51_RS14145 | | endopeptidase La | 0.57 | ABIE51_RS01985 | | DNA helicase II | low | > 62 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.66 | H281DRAFT_00898 | | ATP-dependent proteinase. Serine peptidase. MEROPS family S16 | 0.43 | H281DRAFT_04469 | | ATP-dependent DNA helicase UvrD | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.66 | LRK54_RS16735 | | endopeptidase La | 0.54 | LRK54_RS06850 | | DNA helicase II | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.66 | LRK55_RS16460 | | endopeptidase La | 0.54 | LRK55_RS06595 | | DNA helicase II | — | — |
| Burkholderia phytofirmans PsJN | 0.66 | BPHYT_RS09460 | | peptidase | 0.44 | BPHYT_RS13840 | | DNA-dependent helicase | — | — |
| Dechlorosoma suillum PS | 0.66 | Dsui_2198 | | ATP-dependent protease La | 0.45 | Dsui_1227 | | DNA/RNA helicase, superfamily I | low | > 51 |
| Cupriavidus basilensis FW507-4G11 | 0.66 | RR42_RS09030 | | DNA-binding protein | 0.42 | RR42_RS15090 | | DNA helicase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.66 | Xcc-8004.4046.1 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.54 | Xcc-8004.5114.1 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 74 |
| Herbaspirillum seropedicae SmR1 | 0.65 | HSERO_RS12905 | | peptidase | 0.44 | HSERO_RS02160 | | DNA-dependent helicase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.65 | GFF4044 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.43 | GFF5598 | | ATP-dependent DNA helicase UvrD/PcrA | — | — |
| Acidovorax sp. GW101-3H11 | 0.65 | Ac3H11_937 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.43 | Ac3H11_1660 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 79 |
| Castellaniella sp019104865 MT123 | 0.65 | ABCV34_RS05125 | | endopeptidase La | 0.42 | ABCV34_RS05210 | | UvrD-helicase domain-containing protein | — | — |
| Paraburkholderia graminis OAS925 | 0.64 | ABIE53_002117 | | ATP-dependent Lon protease | 0.43 | ABIE53_002936 | | DNA helicase-2/ATP-dependent DNA helicase PcrA | — | — |
| Variovorax sp. OAS795 | 0.64 | ABID97_RS17590 | | endopeptidase La | 0.45 | ABID97_RS09150 | | UvrD-helicase domain-containing protein | low | > 91 |
| Azospirillum brasilense Sp245 | 0.63 | AZOBR_RS07145 | | peptidase | 0.37 | AZOBR_RS12445 | | DNA helicase II | low | > 97 |
| Azospirillum sp. SherDot2 | 0.63 | MPMX19_01545 | | Lon protease | 0.35 | MPMX19_01610 | | ATP-dependent DNA helicase PcrA | low | > 112 |
| Variovorax sp. SCN45 | 0.63 | GFF487 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.44 | GFF4000 | | ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) | low | > 127 |
| Magnetospirillum magneticum AMB-1 | 0.63 | AMB_RS14035 | | endopeptidase La | 0.33 | AMB_RS03725 | | DNA helicase II | low | > 64 |
| Rhodospirillum rubrum S1H | 0.62 | Rru_A1552 | | Peptidase S16, ATP-dependent protease La (NCBI) | 0.34 | Rru_A1536 | | UvrD/REP helicase (NCBI) | 0.69 | 19 |
| Rhodopseudomonas palustris CGA009 | 0.61 | TX73_015345 | | endopeptidase La | 0.34 | TX73_018165 | | UvrD-helicase domain-containing protein | — | — |
| Rhizobium sp. OAE497 | 0.61 | ABIE40_RS07100 | | endopeptidase La | 0.34 | ABIE40_RS11670 | | UvrD-helicase domain-containing protein | — | — |
| Sinorhizobium meliloti 1021 | 0.61 | SMc01905 | | ATP-dependent protease LA protein | 0.32 | SMc01461 | | DNA helicase II protein | — | — |
| Agrobacterium fabrum C58 | 0.60 | Atu1261 | | ATP-dependent protease LA | 0.34 | Atu2057 | | DNA helicase II | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.60 | A4249_RS06460 | | endopeptidase La | 0.34 | A4249_RS04960 | | UvrD-helicase domain-containing protein | — | — |
| Phaeobacter inhibens DSM 17395 | 0.59 | PGA1_c20540 | | ATP-dependent protease La | 0.34 | PGA1_c09450 | | DNA helicase II UvrD | — | — |
| Bosea sp. OAE506 | 0.59 | ABIE41_RS18050 | | endopeptidase La | 0.36 | ABIE41_RS12730 | | UvrD-helicase domain-containing protein | — | — |
| Dinoroseobacter shibae DFL-12 | 0.59 | Dshi_1777 | | ATP-dependent protease La (RefSeq) | 0.34 | Dshi_2483 | | UvrD/REP helicase (RefSeq) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.58 | Ga0059261_0102 | | endopeptidase La | 0.36 | Ga0059261_0249 | | Superfamily I DNA and RNA helicases | low | > 68 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.52 | DVU1337 | lon | ATP-dependent protease La (TIGR) | 0.20 | DVU0156 | pcrA | ATP-dependent DNA helicase, UvrD/REP family (TIGR) | low | > 55 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.44 | ABZR88_RS15670 | | endopeptidase La | 0.32 | ABZR88_RS07840 | | ATP-dependent helicase | — | — |
| Fusobacterium nucleatum SB010 | 0.43 | HUW76_01065 | | endopeptidase La | 0.29 | HUW76_07175 | | UvrD-helicase domain-containing protein | low | > 35 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.42 | CA264_00045 | | endopeptidase La | 0.33 | CA264_07795 | | ATP-dependent DNA helicase | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.42 | CA265_RS14555 | | endopeptidase La | 0.33 | CA265_RS12980 | | ATP-dependent DNA helicase | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.42 | Echvi_4670 | | ATP-dependent protease La | 0.34 | Echvi_0292 | | Superfamily I DNA and RNA helicases | — | — |
| Bacteroides stercoris CC31F | 0.41 | HMPREF1181_RS14340 | | endopeptidase La | 0.31 | HMPREF1181_RS16505 | | UvrD-helicase domain-containing protein | low | > 56 |
| Bacteroides ovatus ATCC 8483 | 0.40 | BACOVA_02571 | | endopeptidase La | 0.31 | BACOVA_02365 | | UvrD/REP helicase | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.40 | HMPREF1058_RS01210 | | endopeptidase La | 0.31 | HMPREF1058_RS03305 | | UvrD-helicase domain-containing protein | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.40 | ABI39_RS16520 | | endopeptidase La | 0.30 | ABI39_RS17735 | | UvrD-helicase domain-containing protein | — | — |
| Parabacteroides merdae CL09T00C40 | 0.39 | HMPREF1078_RS16185 | | endopeptidase La | 0.31 | HMPREF1078_RS03560 | | 3'-5' exonuclease | low | > 61 |
Not shown: 5 genomes with orthologs for Psest_2285 only; 4 genomes with orthologs for Psest_4098 only