Conservation of cofitness between Psest_3732 and Psest_3118 in Pseudomonas stutzeri RCH2

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_3732 polyphosphate kinase 1 1.0 Psest_3118 endonuclease III 0.35 2
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_4453 Polyphosphate kinase (EC 2.7.4.1) 0.88 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) low > 103
Pseudomonas sp. RS175 0.85 PFR28_04345 Polyphosphate kinase 0.88 PFR28_03349 Endonuclease III low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_0293 Polyphosphate kinase 0.86 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.39 61
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_0293 Polyphosphate kinase 0.86 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase low > 86
Pseudomonas fluorescens FW300-N2C3 0.84 AO356_12895 polyphosphate kinase 0.88 AO356_18345 endonuclease III low > 104
Pseudomonas fluorescens FW300-N1B4 0.84 Pf1N1B4_2208 Polyphosphate kinase (EC 2.7.4.1) 0.88 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18) low > 87
Pseudomonas simiae WCS417 0.84 PS417_27435 polyphosphate kinase 0.87 PS417_05655 endonuclease III low > 88
Pseudomonas fluorescens SBW25 0.84 PFLU_RS29095 polyphosphate kinase 1 0.87 PFLU_RS05740 endonuclease III low > 109
Pseudomonas fluorescens SBW25-INTG 0.84 PFLU_RS29095 polyphosphate kinase 1 0.87 PFLU_RS05740 endonuclease III low > 109
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_874 Polyphosphate kinase (EC 2.7.4.1) 0.88 PfGW456L13_1753 Endonuclease III (EC 4.2.99.18) low > 87
Pseudomonas fluorescens FW300-N2E3 0.84 AO353_08885 polyphosphate kinase 0.88 AO353_04085 endonuclease III low > 101
Pseudomonas putida KT2440 0.83 PP_5217 Polyphosphate kinase 0.87 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites low > 96
Pseudomonas sp. S08-1 0.82 OH686_13995 polyphosphate kinase 1 0.91 OH686_03910 endonuclease III low > 80
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_08995 ppk1 RNA degradosome polyphosphate kinase 0.68 OKGIIK_04675 nth endonuclease III low > 52
Rhodanobacter denitrificans FW104-10B01 0.69 LRK54_RS16000 polyphosphate kinase 1 0.69 LRK54_RS01850 endonuclease III low > 59
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS07490 polyphosphate kinase 1 0.68 ABZR86_RS08185 endonuclease III low > 74
Rhodanobacter denitrificans MT42 0.69 LRK55_RS15755 polyphosphate kinase 1 0.69 LRK55_RS01640 endonuclease III low > 63
Marinobacter adhaerens HP15 0.58 HP15_3334 polyphosphate kinase 0.80 HP15_1285 endonuclease III low > 73
Acinetobacter radioresistens SK82 0.56 MPMX26_02335 Polyphosphate kinase 0.70 MPMX26_02306 Endonuclease III low > 36
Dechlorosoma suillum PS 0.50 Dsui_2814 polyphosphate kinase 1 0.70 Dsui_2985 endonuclease III low > 51
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_2312 polyphosphate kinase 1 0.78 B158DRAFT_2365 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) low > 40
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS31480 polyphosphate kinase 0.72 RR42_RS05970 endonuclease III low > 128
Lysobacter sp. OAE881 0.48 ABIE51_RS14230 polyphosphate kinase 1 0.65 ABIE51_RS07560 endonuclease III low > 62
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.4064.1 Polyphosphate kinase (EC 2.7.4.1) 0.68 Xcc-8004.3350.1 Endonuclease III (EC 4.2.99.18) low > 74
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS06305 polyphosphate kinase 0.75 HSERO_RS08070 endonuclease IV low > 78
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS04860 polyphosphate kinase 1 0.69 QEN71_RS24560 endonuclease III low > 153
Paraburkholderia graminis OAS925 0.46 ABIE53_002988 polyphosphate kinase 0.67 ABIE53_001423 endonuclease-3 low > 113
Castellaniella sp019104865 MT123 0.46 ABCV34_RS15580 polyphosphate kinase 1 0.69 ABCV34_RS08465 endonuclease III low > 48
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS14110 polyphosphate kinase 0.67 BPHYT_RS06080 endonuclease IV low > 109
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04418 polyphosphate kinase 0.67 H281DRAFT_00293 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III low > 103
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS14065 polyphosphate kinase 1 0.69 ABZR87_RS09915 endonuclease III low > 80
Ralstonia solanacearum PSI07 0.45 RPSI07_RS15330 polyphosphate kinase 1 0.71 RPSI07_RS19265 endonuclease III low > 81
Ralstonia solanacearum UW163 0.45 UW163_RS15425 polyphosphate kinase 1 0.69 UW163_RS11660 endonuclease III — —
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS02115 polyphosphate kinase 1 0.69 RALBFv3_RS14195 endonuclease III low > 76
Ralstonia solanacearum GMI1000 0.45 RS_RS07705 polyphosphate kinase 1 0.70 RS_RS04975 endonuclease III low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF4226 Polyphosphate kinase (EC 2.7.4.1) 0.65 GFF4003 Endonuclease III (EC 4.2.99.18) low > 90
Acidovorax sp. GW101-3H11 0.40 Ac3H11_452 Polyphosphate kinase (EC 2.7.4.1) 0.65 Ac3H11_1010 Endonuclease III (EC 4.2.99.18) 0.61 28
Variovorax sp. OAS795 0.40 ABID97_RS14575 polyphosphate kinase 1 0.65 ABID97_RS17315 endonuclease III 0.46 73
Variovorax sp. SCN45 0.40 GFF1089 Polyphosphate kinase (EC 2.7.4.1) 0.67 GFF418 Endonuclease III (EC 4.2.99.18) low > 127
Rhodospirillum rubrum S1H 0.36 Rru_A2161 Polyphosphate kinase (NCBI) 0.57 Rru_A0153 Endonuclease III/Nth (NCBI) low > 58
Bifidobacterium breve UCC2003 0.36 BBR_RS19645 RNA degradosome polyphosphate kinase 0.29 BBR_RS11790 endonuclease III low > 34
Synechococcus elongatus PCC 7942 0.35 Synpcc7942_1566 ppk polyphosphate kinase 0.31 Synpcc7942_0447 nth DNA-(apurinic or apyrimidinic site) lyase / endonuclease III low > 38
Bosea sp. OAE506 0.34 ABIE41_RS16125 RNA degradosome polyphosphate kinase 0.59 ABIE41_RS03410 endonuclease III low > 77
Magnetospirillum magneticum AMB-1 0.34 AMB_RS14295 RNA degradosome polyphosphate kinase 0.59 AMB_RS21105 endonuclease III low > 64
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_01782 polyphosphate kinase 1 0.53 CCNA_03847 endonuclease III low > 67
Caulobacter crescentus NA1000 0.34 CCNA_01782 polyphosphate kinase 1 0.53 CCNA_03847 endonuclease III low > 66
Dinoroseobacter shibae DFL-12 0.33 Dshi_0740 Polyphosphate kinase (RefSeq) 0.57 Dshi_3023 endonuclease III (RefSeq) low > 64
Azospirillum brasilense Sp245 0.33 AZOBR_RS16235 polyphosphate kinase 0.59 AZOBR_RS01565 endonuclease III low > 97
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_0225 polyphosphate kinase 1 0.57 Ga0059261_2546 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) low > 68
Mycobacterium tuberculosis H37Rv 0.33 Rv2984 Polyphosphate kinase PPK (polyphosphoric acid kinase) (ATP-polyphosphate phosphotransferase) 0.28 Rv3674c Probable endonuclease III Nth (DNA-(apurinic or apyrimidinic site)lyase) (AP lyase) (AP endonuclease class I) (endodeoxyribonuclease (apurinic or apyrimidinic)) (deoxyribonuclease (apurinic or apyrimidinic)) — —
Azospirillum sp. SherDot2 0.33 MPMX19_01149 Polyphosphate kinase 0.60 MPMX19_02500 Endonuclease III low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS08195 RNA degradosome polyphosphate kinase 0.55 A4249_RS15000 endonuclease III — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.30 CA264_11200 RNA degradosome polyphosphate kinase 0.42 CA264_14955 endonuclease III low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.29 Echvi_2996 polyphosphate kinase 1 0.42 Echvi_1263 endonuclease III low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS04845 polyphosphate kinase 1 0.42 ABZR88_RS16725 endonuclease III low > 71
Escherichia coli Nissle 1917 0.27 ECOLIN_RS14200 polyphosphate kinase 1 0.70 ECOLIN_RS09110 endonuclease III — —
Escherichia coli BW25113 0.27 b2501 ppk polyphosphate kinase (NCBI) 0.70 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) low > 76
Escherichia coli ECRC99 0.27 KEDOAH_06420 ppk1 polyphosphate kinase 1 0.69 KEDOAH_00580 nth endonuclease III — —
Escherichia coli ECOR27 0.27 NOLOHH_13450 ppk1 polyphosphate kinase 1 0.70 NOLOHH_18045 nth endonuclease III — —
Escherichia coli ECRC101 0.27 OKFHMN_21800 ppk1 polyphosphate kinase 1 0.69 OKFHMN_27525 nth endonuclease III — —
Escherichia coli ECRC101 0.27 MCAODC_12330 ppk1 polyphosphate kinase 1 0.69 MCAODC_17885 nth endonuclease III — —
Escherichia coli BL21 0.27 ECD_02393 polyphosphate kinase, component of RNA degradosome 0.70 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) — —
Escherichia coli ECRC98 0.27 JDDGAC_25745 ppk1 polyphosphate kinase 1 0.69 JDDGAC_02115 nth endonuclease III — —
Escherichia coli ECOR38 0.27 HEPCGN_20965 ppk1 polyphosphate kinase 1 0.70 HEPCGN_05910 nth endonuclease III low > 85
Escherichia coli ECRC62 0.27 BNILDI_12260 ppk1 polyphosphate kinase 1 0.70 BNILDI_16835 nth endonuclease III — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_01225 Polyphosphate kinase 0.70 OHPLBJKB_02093 Endonuclease III low > 73
Escherichia coli ECRC102 0.27 NIAGMN_19570 ppk1 polyphosphate kinase 1 0.69 NIAGMN_00540 nth endonuclease III — —
Escherichia fergusonii Becca 0.27 EFB2_01397 Polyphosphate kinase 0.70 EFB2_02359 Endonuclease III low > 86
Pedobacter sp. GW460-11-11-14-LB5 0.26 CA265_RS09830 polyphosphate kinase 1 0.40 CA265_RS00605 endonuclease III low > 88
Pectobacterium carotovorum WPP14 0.26 HER17_RS06425 polyphosphate kinase 1 0.71 HER17_RS10860 endonuclease III low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF2167 Polyphosphate kinase (EC 2.7.4.1) 0.70 GFF3641 Endonuclease III (EC 4.2.99.18) low > 78
Enterobacter sp. TBS_079 0.26 MPMX20_03356 Polyphosphate kinase 0.71 MPMX20_02005 Endonuclease III low > 85
Serratia liquefaciens MT49 0.26 IAI46_18915 polyphosphate kinase 1 0.70 IAI46_11455 endonuclease III low > 86
Pantoea sp. MT58 0.26 IAI47_05155 polyphosphate kinase 1 0.71 IAI47_10475 endonuclease III low > 76
Dickeya dadantii 3937 0.26 DDA3937_RS15150 polyphosphate kinase 1 0.68 DDA3937_RS10545 endonuclease III low > 74
Klebsiella michiganensis M5al 0.26 BWI76_RS20995 RNA degradosome polyphosphate kinase 0.70 BWI76_RS16385 endonuclease III — —
Enterobacter asburiae PDN3 0.26 EX28DRAFT_0166 polyphosphate kinase 1 0.70 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) low > 76
Dickeya dianthicola 67-19 0.26 HGI48_RS15225 polyphosphate kinase 1 0.69 HGI48_RS10545 endonuclease III low > 71
Parabacteroides merdae CL09T00C40 0.26 HMPREF1078_RS16770 RNA degradosome polyphosphate kinase 0.41 HMPREF1078_RS09755 endonuclease III low > 61
Rahnella sp. WP5 0.26 EX31_RS22680 polyphosphate kinase 1 0.71 EX31_RS06590 endonuclease III low > 89
Dickeya dianthicola ME23 0.26 DZA65_RS16045 polyphosphate kinase 1 0.69 DZA65_RS11025 endonuclease III low > 75
Alteromonas macleodii MIT1002 0.25 MIT1002_00872 Polyphosphate kinase 0.33 MIT1002_01251 Endonuclease III low > 70
Erwinia tracheiphila SCR3 0.25 LU632_RS08260 ppk1 polyphosphate kinase 1 0.72 LU632_RS11305 nth endonuclease III low > 74
Vibrio cholerae E7946 ATCC 55056 0.25 CSW01_03780 polyphosphate kinase 1 0.70 CSW01_05145 endonuclease III low > 62
Bacteroides stercoris CC31F 0.25 HMPREF1181_RS08035 RNA degradosome polyphosphate kinase 0.44 HMPREF1181_RS05445 endonuclease III low > 56
Bacteroides thetaiotaomicron VPI-5482 0.25 BT0541 Polyphosphate kinase (NCBI ptt file) 0.44 BT1671 endonuclease III (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.24 BACOVA_03769 polyphosphate kinase 1 0.44 BACOVA_04414 endonuclease III low > 94
Shewanella amazonensis SB2B 0.24 Sama_2011 polyphosphate kinase (RefSeq) 0.68 Sama_1836 endonuclease III (RefSeq) low > 62
Phocaeicola dorei CL03T12C01 0.24 ABI39_RS01585 RNA degradosome polyphosphate kinase 0.43 ABI39_RS11275 endonuclease III low > 72
Phocaeicola vulgatus CL09T03C04 0.24 HMPREF1058_RS02340 RNA degradosome polyphosphate kinase 0.44 HMPREF1058_RS15245 endonuclease III low > 67
Shewanella loihica PV-4 0.24 Shew_3079 polyphosphate kinase (RefSeq) 0.68 Shew_2072 endonuclease III (RefSeq) low > 60
Shewanella sp. ANA-3 0.23 Shewana3_2417 polyphosphate kinase (RefSeq) 0.68 Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) low > 73

Not shown: 4 genomes with orthologs for Psest_3732 only; 3 genomes with orthologs for Psest_3118 only