| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rahnella sp. WP5 | 1.0 | EX31_RS22280 | | 7-cyano-7-deazaguanine synthase QueC | 1.0 | EX31_RS12400 | | RNA polymerase factor sigma-54 | 0.57 | 4 |
| Serratia liquefaciens MT49 | 0.88 | IAI46_05045 | | 7-cyano-7-deazaguanine synthase QueC | 0.94 | IAI46_22470 | | RNA polymerase factor sigma-54 | — | — |
| Pantoea sp. MT58 | 0.83 | IAI47_14620 | | 7-cyano-7-deazaguanine synthase QueC | 0.88 | IAI47_17185 | | RNA polymerase factor sigma-54 | low | > 76 |
| Escherichia coli Nissle 1917 | 0.83 | ECOLIN_RS02660 | | 7-cyano-7-deazaguanine synthase QueC | 0.86 | ECOLIN_RS18425 | | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECOR38 | 0.83 | HEPCGN_06910 | queC | 7-cyano-7-deazaguanine synthase QueC | 0.86 | HEPCGN_16815 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.83 | OHPLBJKB_03229 | | 7-cyano-7-deazaguanine synthase | 0.86 | OHPLBJKB_00498 | | RNA polymerase sigma-54 factor | — | — |
| Pectobacterium carotovorum WPP14 | 0.83 | HER17_RS15815 | | 7-cyano-7-deazaguanine synthase QueC | 0.90 | HER17_RS20060 | | RNA polymerase factor sigma-54 | low | > 75 |
| Escherichia fergusonii Becca | 0.83 | EFB2_03613 | | 7-cyano-7-deazaguanine synthase | 0.86 | EFB2_00621 | | RNA polymerase sigma-54 factor | — | — |
| Escherichia coli ECOR27 | 0.83 | NOLOHH_01230 | queC | 7-cyano-7-deazaguanine synthase QueC | 0.86 | NOLOHH_09740 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli BW25113 | 0.82 | b0444 | ybaX | predicted aluminum resistance protein (NCBI) | 0.86 | b3202 | rpoN | DNA-directed RNA polymerase subunit N (NCBI) | — | — |
| Escherichia coli BL21 | 0.82 | ECD_00396 | | 7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis | 0.86 | ECD_03067 | | RNA polymerase, sigma 54 (sigma N) factor | low | > 61 |
| Dickeya dianthicola ME23 | 0.82 | DZA65_RS06040 | | 7-cyano-7-deazaguanine synthase QueC | 0.87 | DZA65_RS01510 | | RNA polymerase factor sigma-54 | low | > 75 |
| Dickeya dianthicola 67-19 | 0.82 | HGI48_RS05715 | | 7-cyano-7-deazaguanine synthase QueC | 0.87 | HGI48_RS01445 | | RNA polymerase factor sigma-54 | low | > 71 |
| Escherichia coli ECRC62 | 0.82 | BNILDI_22645 | queC | 7-cyano-7-deazaguanine synthase QueC | 0.86 | BNILDI_01795 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Dickeya dadantii 3937 | 0.82 | DDA3937_RS05670 | | 7-cyano-7-deazaguanine synthase QueC | 0.88 | DDA3937_RS01530 | | RNA polymerase factor sigma-54 | low | > 74 |
| Escherichia coli ECRC102 | 0.82 | NIAGMN_06350 | queC | 7-cyano-7-deazaguanine synthase QueC | 0.86 | NIAGMN_15700 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC98 | 0.82 | JDDGAC_11950 | queC | 7-cyano-7-deazaguanine synthase QueC | 0.86 | JDDGAC_21565 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC100 | 0.82 | OKFHMN_08295 | queC | 7-cyano-7-deazaguanine synthase QueC | 0.86 | OKFHMN_17940 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC101 | 0.82 | MCAODC_27520 | queC | 7-cyano-7-deazaguanine synthase QueC | 0.86 | MCAODC_08460 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC99 | 0.82 | KEDOAH_19670 | queC | 7-cyano-7-deazaguanine synthase QueC | 0.86 | KEDOAH_10210 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Enterobacter sp. TBS_079 | 0.82 | MPMX20_01035 | | 7-cyano-7-deazaguanine synthase | 0.84 | MPMX20_04108 | | RNA polymerase sigma-54 factor | — | — |
| Klebsiella michiganensis M5al | 0.82 | BWI76_RS06560 | | 7-cyano-7-deazaguanine synthase QueC | 0.87 | BWI76_RS25265 | | RNA polymerase factor sigma-54 | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.81 | GFF4360 | | Queuosine Biosynthesis QueC ATPase | 0.85 | GFF2946 | | RNA polymerase sigma-54 factor RpoN | low | > 78 |
| Enterobacter asburiae PDN3 | 0.81 | EX28DRAFT_2526 | | queuosine biosynthesis protein QueC | 0.86 | EX28DRAFT_3256 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Erwinia tracheiphila SCR3 | 0.80 | LU632_RS18310 | queC | 7-cyano-7-deazaguanine synthase QueC | 0.86 | LU632_RS21280 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.74 | AO353_22170 | | 7-cyano-7-deazaguanine synthase | 0.54 | AO353_05180 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.74 | Pf1N1B4_1527 | | Queuosine Biosynthesis QueC ATPase | 0.54 | Pf1N1B4_1080 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.71 | Pf6N2E2_3734 | | Queuosine Biosynthesis QueC ATPase | 0.53 | Pf6N2E2_3267 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.69 | CSW01_06875 | | 7-cyano-7-deazaguanine synthase QueC | 0.64 | CSW01_12815 | | RNA polymerase sigma-54 factor | low | > 62 |
| Shewanella loihica PV-4 | 0.68 | Shew_2062 | | exsB protein (RefSeq) | 0.62 | Shew_3311 | | RNA polymerase factor sigma-54 (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.68 | Sama_1826 | | ExsB protein (RefSeq) | 0.62 | Sama_3088 | | RNA polymerase factor sigma-54 (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.67 | SO2503 | exsB | exsB protein (NCBI ptt file) | 0.60 | SO3961 | rpoN | RNA polymerase sigma-54 factor (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.67 | Shewana3_2164 | | queuosine biosynthesis protein QueC (RefSeq) | 0.60 | Shewana3_0672 | | RNA polymerase factor sigma-54 (RefSeq) | low | > 73 |
| Phocaeicola vulgatus CL09T03C04 | 0.48 | HMPREF1058_RS15270 | | 7-cyano-7-deazaguanine synthase QueC | 0.20 | HMPREF1058_RS12505 | | RNA polymerase factor sigma-54 | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.48 | ABI39_RS11300 | | 7-cyano-7-deazaguanine synthase QueC | 0.20 | ABI39_RS04230 | | RNA polymerase factor sigma-54 | low | > 72 |
| Bacteroides stercoris CC31F | 0.47 | HMPREF1181_RS11150 | | 7-cyano-7-deazaguanine synthase QueC | 0.21 | HMPREF1181_RS00925 | | RNA polymerase factor sigma-54 | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.46 | BT1566 | | putative aluminum resistance protein (NCBI ptt file) | 0.20 | BT2521 | | RNA polymerase sigma-54 (NCBI ptt file) | — | — |
| Bacteroides ovatus ATCC 8483 | 0.45 | BACOVA_04309 | | protein ExsB | 0.21 | BACOVA_01616 | | RNA polymerase sigma-54 factor | — | — |
| Herbaspirillum seropedicae SmR1 | 0.42 | HSERO_RS20880 | | 7-cyano-7-deazaguanine synthase | 0.39 | HSERO_RS19855 | | RNA polymerase subunit sigma-54 | — | — |
| Parabacteroides merdae CL09T00C40 | 0.41 | HMPREF1078_RS14060 | | 7-cyano-7-deazaguanine synthase QueC | 0.27 | HMPREF1078_RS05920 | | RNA polymerase factor sigma-54 | low | > 61 |
| Variovorax sp. SCN45 | 0.41 | GFF5214 | | 7-cyano-7-deazaguanine synthase (EC 6.3.4.20) | 0.33 | GFF6290 | | RNA polymerase sigma-54 factor RpoN | low | > 127 |
| Paraburkholderia graminis OAS925 | 0.40 | ABIE53_000396 | | 7-cyano-7-deazaguanine synthase | 0.41 | ABIE53_000718 | | RNA polymerase sigma-54 factor | low | > 113 |
| Acidovorax sp. GW101-3H11 | 0.39 | Ac3H11_4838 | | Queuosine Biosynthesis QueC ATPase | 0.35 | Ac3H11_727 | | RNA polymerase sigma-54 factor RpoN | low | > 79 |
| Burkholderia phytofirmans PsJN | 0.39 | BPHYT_RS01500 | | 7-cyano-7-deazaguanine synthase | 0.42 | BPHYT_RS02905 | | RNA polymerase subunit sigma-54 | low | > 109 |
| Rhodopseudomonas palustris CGA009 | 0.39 | TX73_014550 | | 7-cyano-7-deazaguanine synthase QueC | 0.27 | TX73_000260 | | RNA polymerase factor sigma-54 | low | > 86 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.39 | H281DRAFT_02232 | | preQ(0) biosynthesis protein QueC | 0.41 | H281DRAFT_01927 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.39 | QEN71_RS00200 | | 7-cyano-7-deazaguanine synthase QueC | 0.42 | QEN71_RS01755 | | RNA polymerase factor sigma-54 | low | > 153 |
| Castellaniella sp019104865 MT123 | 0.39 | ABCV34_RS10950 | | 7-cyano-7-deazaguanine synthase QueC | 0.27 | ABCV34_RS12430 | | RNA polymerase factor sigma-54 | low | > 48 |
| Caulobacter crescentus NA1000 | 0.38 | CCNA_03262 | | queuosine biosynthesis protein QueC | 0.32 | CCNA_03713 | | RNA polymerase sigma-54 factor rpoN | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.38 | CCNA_03262 | | queuosine biosynthesis protein QueC | 0.32 | CCNA_03713 | | RNA polymerase sigma-54 factor rpoN | low | > 67 |
| Bosea sp. OAE506 | 0.38 | ABIE41_RS11340 | | 7-cyano-7-deazaguanine synthase QueC | 0.33 | ABIE41_RS00125 | | RNA polymerase factor sigma-54 | low | > 77 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.38 | DVU2659 | | exsB protein (TIGR) | 0.33 | DVU1628 | rpoN | RNA polymerase sigma-54 factor (TIGR) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.37 | GFF1402 | | Queuosine Biosynthesis QueC ATPase | 0.34 | GFF3068 | | RNA polymerase sigma-54 factor RpoN | low | > 90 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.36 | A4249_RS08700 | | 7-cyano-7-deazaguanine synthase QueC | 0.29 | A4249_RS16075 | | RNA polymerase factor sigma-54 | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.36 | DvMF_1125 | | exsB protein (RefSeq) | 0.35 | DvMF_0427 | | RNA polymerase, sigma 54 subunit, RpoN (RefSeq) | — | — |
| Pseudomonas stutzeri RCH2 | 0.30 | Psest_1506 | | queuosine biosynthesis protein QueC | 0.54 | Psest_3313 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.29 | AO356_18070 | | 7-cyano-7-deazaguanine synthase | 0.54 | AO356_07035 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas sp. S08-1 | 0.29 | OH686_19180 | | queuosine biosynthesis protein QueC | 0.54 | OH686_08540 | | RNA polymerase sigma-54 factor | — | — |
| Acinetobacter radioresistens SK82 | 0.29 | MPMX26_02175 | | 7-cyano-7-deazaguanine synthase | 0.41 | MPMX26_02592 | | RNA polymerase sigma-54 factor | low | > 36 |
| Pseudomonas sp. RS175 | 0.29 | PFR28_03403 | | 7-cyano-7-deazaguanine synthase | 0.52 | PFR28_00173 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas simiae WCS417 | 0.29 | PS417_22400 | | 7-cyano-7-deazaguanine synthase | 0.54 | PS417_04345 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.29 | PFLU_RS24040 | | 7-cyano-7-deazaguanine synthase QueC | 0.54 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | — | — |
| Kangiella aquimarina DSM 16071 | 0.29 | B158DRAFT_1146 | | preQ(0) biosynthesis protein QueC | 0.36 | B158DRAFT_2080 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | low | > 40 |
| Pseudomonas fluorescens SBW25 | 0.29 | PFLU_RS24040 | | 7-cyano-7-deazaguanine synthase QueC | 0.54 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas putida KT2440 | 0.29 | PP_1226 | | pre-queuosine 0 synthase | 0.53 | PP_0952 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.28 | Psyr_1419 | | preQ(0) biosynthesis protein QueC | 0.54 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.28 | Psyr_1419 | | preQ(0) biosynthesis protein QueC | 0.54 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Ralstonia solanacearum UW163 | 0.28 | UW163_RS00625 | | 7-cyano-7-deazaguanine synthase QueC | 0.42 | UW163_RS02410 | | RNA polymerase sigma-54 factor | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.28 | RALBFv3_RS12940 | | 7-cyano-7-deazaguanine synthase QueC | 0.42 | RALBFv3_RS11170 | | RNA polymerase sigma-54 factor | low | > 76 |
| Dyella japonica UNC79MFTsu3.2 | 0.28 | ABZR86_RS10785 | | 7-cyano-7-deazaguanine synthase QueC | 0.41 | ABZR86_RS19815 | | RNA polymerase factor sigma-54 | low | > 74 |
| Lysobacter sp. OAE881 | 0.28 | ABIE51_RS05105 | | 7-cyano-7-deazaguanine synthase QueC | 0.39 | ABIE51_RS15955 | | RNA polymerase factor sigma-54 | low | > 62 |
| Ralstonia solanacearum PSI07 | 0.28 | RPSI07_RS20285 | | 7-cyano-7-deazaguanine synthase QueC | 0.42 | RPSI07_RS22130 | | RNA polymerase factor sigma-54 | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.27 | RS_RS03715 | | 7-cyano-7-deazaguanine synthase | 0.43 | RS_RS02020 | | RNA polymerase sigma-54 factor | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.27 | PfGW456L13_1862 | | Queuosine Biosynthesis QueC ATPase | 0.53 | PfGW456L13_5014 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Ralstonia sp. UNC404CL21Col | 0.27 | ABZR87_RS09000 | | 7-cyano-7-deazaguanine synthase QueC | 0.43 | ABZR87_RS07060 | | RNA polymerase factor sigma-54 | low | > 80 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.27 | Xcc-8004.1450.1 | | Queuosine Biosynthesis QueC ATPase | 0.39 | Xcc-8004.1662.1 | | RNA polymerase sigma-54 factor RpoN | low | > 74 |
| Cupriavidus basilensis FW507-4G11 | 0.27 | RR42_RS15445 | | 7-cyano-7-deazaguanine synthase | 0.40 | RR42_RS02085 | | RNA polymerase subunit sigma-54 | low | > 128 |
| Rhodanobacter sp. FW510-T8 | 0.26 | OKGIIK_01895 | queC | 7-cyano-7-deazaguanine synthase QueC | 0.39 | OKGIIK_02265 | | RNA polymerase factor sigma-54 | low | > 52 |
| Dechlorosoma suillum PS | 0.26 | Dsui_0549 | | queuosine biosynthesis protein QueC | 0.40 | Dsui_0704 | | RNA polymerase sigma-54 factor | low | > 51 |
| Rhodanobacter denitrificans FW104-10B01 | 0.26 | LRK54_RS04855 | | 7-cyano-7-deazaguanine synthase QueC | 0.40 | LRK54_RS12875 | | RNA polymerase factor sigma-54 | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.26 | LRK55_RS04635 | | 7-cyano-7-deazaguanine synthase QueC | 0.40 | LRK55_RS12575 | | RNA polymerase factor sigma-54 | low | > 63 |
| Rhodospirillum rubrum S1H | 0.26 | Rru_A1957 | | ExsB (NCBI) | 0.33 | Rru_A0010 | | Sigma-54 (RpoN) (NCBI) | low | > 58 |
| Alteromonas macleodii MIT1002 | 0.26 | MIT1002_01263 | | 7-cyano-7-deazaguanine synthase | 0.65 | MIT1002_00827 | | RNA polymerase sigma-54 factor 2 | low | > 70 |
| Magnetospirillum magneticum AMB-1 | 0.26 | AMB_RS20345 | | 7-cyano-7-deazaguanine synthase | 0.31 | AMB_RS19925 | | RNA polymerase sigma-54 factor | — | — |
| Azospirillum sp. SherDot2 | 0.25 | MPMX19_00425 | | 7-cyano-7-deazaguanine synthase | 0.29 | MPMX19_02668 | | RNA polymerase sigma-54 factor 2 | low | > 112 |
| Azospirillum brasilense Sp245 | 0.25 | AZOBR_RS04150 | | 7-cyano-7-deazaguanine synthase | 0.31 | AZOBR_RS18870 | | RNA polymerase sigma54 factor | low | > 97 |
| Marinobacter adhaerens HP15 | 0.23 | HP15_3814 | | ExsB protein | 0.57 | HP15_2442 | | RNA polymerase, sigma 54 subunit, RpoN | low | > 73 |
| Sphingomonas koreensis DSMZ 15582 | 0.22 | Ga0059261_3209 | | queuosine biosynthesis protein QueC | 0.30 | Ga0059261_2543 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | low | > 68 |
| Agrobacterium fabrum C58 | 0.17 | Atu3346 | | succinoglycan biosynthesis regulator | 0.29 | Atu0332 | | RNA polymerase sigma-54 factor | low | > 89 |
| Sinorhizobium meliloti 1021 | 0.17 | SM_b20940 | | hypothetical protein | 0.29 | SMc01139 | | RNA polymerase factor sigma-54 | low | > 103 |
Not shown: 4 genomes with orthologs for EX31_RS22280 only; 7 genomes with orthologs for EX31_RS12400 only