Conservation of cofitness between Dsui_0311 and Dsui_1227 in Dechlorosoma suillum PS

91 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dechlorosoma suillum PS 1.0 Dsui_0311 ATP-dependent DNA helicase RecG 1.0 Dsui_1227 DNA/RNA helicase, superfamily I 0.83 9
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS05675 DNA helicase RecG 0.61 RALBFv3_RS03775 DNA-dependent helicase — —
Ralstonia solanacearum UW163 0.59 UW163_RS07950 DNA helicase RecG 0.61 UW163_RS09895 DNA-dependent helicase — —
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS17390 ATP-dependent DNA helicase RecG 0.62 RR42_RS15090 DNA helicase low > 128
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS01270 ATP-dependent DNA helicase RecG 0.62 ABZR87_RS15705 UvrD-helicase domain-containing protein low > 80
Ralstonia solanacearum GMI1000 0.58 RS_RS13565 DNA helicase RecG 0.61 RS_RS11220 DNA-dependent helicase — —
Ralstonia solanacearum PSI07 0.58 RPSI07_RS11625 DNA helicase RecG 0.62 RPSI07_RS13455 DNA-dependent helicase — —
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS03400 ATP-dependent DNA helicase RecG 0.63 BPHYT_RS13840 DNA-dependent helicase — —
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS26630 ATP-dependent DNA helicase RecG 0.62 QEN71_RS05110 3'-5' exonuclease — —
Herbaspirillum seropedicae SmR1 0.56 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.62 HSERO_RS02160 DNA-dependent helicase 0.46 29
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_04672 ATP-dependent DNA helicase RecG 0.63 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Paraburkholderia graminis OAS925 0.56 ABIE53_000833 ATP-dependent DNA helicase RecG 0.63 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Acidovorax sp. GW101-3H11 0.51 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.61 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA low > 79
Variovorax sp. OAS795 0.50 ABID97_RS01575 ATP-dependent DNA helicase RecG 0.61 ABID97_RS09150 UvrD-helicase domain-containing protein low > 91
Castellaniella sp019104865 MT123 0.49 ABCV34_RS03570 ATP-dependent DNA helicase RecG 0.59 ABCV34_RS05210 UvrD-helicase domain-containing protein low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.61 GFF5598 ATP-dependent DNA helicase UvrD/PcrA — —
Variovorax sp. SCN45 0.48 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.60 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 127
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.43 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA 0.36 30
Pseudomonas stutzeri RCH2 0.46 Psest_4192 ATP-dependent DNA helicase RecG 0.44 Psest_4098 Superfamily I DNA and RNA helicases — —
Pseudomonas putida KT2440 0.46 PP_5310 junction-specific ATP-dependent DNA helicase 0.44 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex 0.50 9
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.44 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA 0.50 7
Pseudomonas fluorescens SBW25 0.45 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.44 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.44 PFLU_RS29900 DNA helicase II 0.56 1
Lysobacter sp. OAE881 0.45 ABIE51_RS17230 ATP-dependent DNA helicase RecG 0.46 ABIE51_RS01985 DNA helicase II 0.93 1
Pseudomonas fluorescens FW300-N2E3 0.45 AO353_09320 ATP-dependent DNA helicase RecG 0.44 AO353_10055 DNA helicase II 0.72 1
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_0201 ATP-dependent DNA helicase RecG 0.44 Psyr_5065 ATP-dependent DNA helicase UvrD 0.47 9
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_0201 ATP-dependent DNA helicase RecG 0.44 Psyr_5065 ATP-dependent DNA helicase UvrD 0.56 7
Pseudomonas sp. S08-1 0.45 OH686_13505 ATP-dependent DNA helicase RecG 0.42 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Pseudomonas sp. RS175 0.45 PFR28_04435 ATP-dependent DNA helicase RecG 0.44 PFR28_04523 DNA helicase II 0.30 17
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_12380 ATP-dependent DNA helicase RecG 0.44 AO356_11990 DNA helicase II 0.52 11
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.44 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA 0.42 17
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.44 ABZR86_RS16965 DNA helicase II 0.93 4
Shewanella loihica PV-4 0.44 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.44 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) 0.63 5
Shewanella sp. ANA-3 0.44 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.45 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) 0.72 1
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS11805 ATP-dependent DNA helicase RecG 0.44 LRK54_RS06850 DNA helicase II low > 59
Rhodanobacter denitrificans MT42 0.44 LRK55_RS11530 ATP-dependent DNA helicase RecG 0.44 LRK55_RS06595 DNA helicase II — —
Alteromonas macleodii MIT1002 0.43 MIT1002_00111 ATP-dependent DNA helicase RecG 0.46 MIT1002_00153 DNA helicase II low > 70
Shewanella oneidensis MR-1 0.43 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.45 SO0467 uvrD DNA helicase II (NCBI ptt file) 0.50 23
Escherichia coli ECRC102 0.43 NIAGMN_13305 recG ATP-dependent DNA helicase RecG 0.45 NIAGMN_12165 uvrD DNA helicase II — —
Escherichia coli ECRC101 0.43 MCAODC_06055 recG ATP-dependent DNA helicase RecG 0.45 MCAODC_04915 uvrD DNA helicase II — —
Escherichia coli ECRC99 0.43 KEDOAH_12600 recG ATP-dependent DNA helicase RecG 0.45 KEDOAH_13740 uvrD DNA helicase II — —
Escherichia coli ECRC98 0.43 JDDGAC_19170 recG ATP-dependent DNA helicase RecG 0.45 JDDGAC_18035 uvrD DNA helicase II — —
Escherichia coli ECRC101 0.43 OKFHMN_15545 recG ATP-dependent DNA helicase RecG 0.45 OKFHMN_14410 uvrD DNA helicase II — —
Rhodanobacter sp. FW510-T8 0.43 OKGIIK_12090 recG ATP-dependent DNA helicase RecG 0.43 OKGIIK_16775 DNA helicase low > 52
Pantoea sp. MT58 0.43 IAI47_00500 ATP-dependent DNA helicase RecG 0.44 IAI47_18390 DNA helicase II 0.50 42
Escherichia coli ECOR38 0.43 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 0.45 HEPCGN_13115 uvrD DNA helicase II low > 85
Rahnella sp. WP5 0.43 EX31_RS15820 ATP-dependent DNA helicase RecG 0.44 EX31_RS15175 DNA helicase II low > 89
Escherichia coli Nissle 1917 0.43 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 0.45 ECOLIN_RS21885 DNA helicase II 0.89 2
Shewanella amazonensis SB2B 0.43 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.45 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) 0.55 3
Escherichia fergusonii Becca 0.43 EFB2_00136 ATP-dependent DNA helicase RecG 0.45 EFB2_04824 DNA helicase II 0.48 11
Escherichia coli ECRC62 0.43 BNILDI_04090 recG ATP-dependent DNA helicase RecG 0.45 BNILDI_04995 uvrD DNA helicase II — —
Marinobacter adhaerens HP15 0.43 HP15_309 DNA helicase, ATP-dependent, RecG 0.43 HP15_3403 UvrD/REP helicase 0.64 18
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.47 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.87 1
Escherichia coli HS(pFamp)R (ATCC 700891) 0.43 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 0.45 OHPLBJKB_04237 DNA helicase II 0.66 43
Escherichia coli BL21 0.42 ECD_03509 ATP-dependent DNA helicase 0.45 ECD_03689 DNA-dependent ATPase I and helicase II — —
Escherichia coli ECOR27 0.42 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 0.45 NOLOHH_06540 uvrD DNA helicase II low > 57
Escherichia coli BW25113 0.42 b3652 recG ATP-dependent DNA helicase (NCBI) 0.45 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.64 2
Dickeya dianthicola ME23 0.42 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.45 DZA65_RS21080 DNA helicase II low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.45 GFF241 ATP-dependent DNA helicase UvrD/PcrA 0.52 38
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.45 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA low > 74
Erwinia tracheiphila SCR3 0.42 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.45 LU632_RS24125 uvrD DNA helicase II — —
Dickeya dadantii 3937 0.42 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.45 DDA3937_RS19880 DNA helicase II low > 74
Dickeya dianthicola 67-19 0.42 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.45 HGI48_RS20035 DNA helicase II low > 71
Enterobacter sp. TBS_079 0.42 MPMX20_00084 ATP-dependent DNA helicase RecG 0.45 MPMX20_04463 DNA helicase II low > 85
Serratia liquefaciens MT49 0.41 IAI46_24905 ATP-dependent DNA helicase RecG 0.44 IAI46_00735 DNA helicase II 0.67 18
Klebsiella michiganensis M5al 0.41 BWI76_RS27440 DNA helicase RecG 0.45 BWI76_RS01220 DNA-dependent helicase II 0.54 2
Enterobacter asburiae PDN3 0.41 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.45 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) low > 76
Pectobacterium carotovorum WPP14 0.41 HER17_RS21395 ATP-dependent DNA helicase RecG 0.45 HER17_RS01360 DNA helicase II low > 75
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_13680 DNA helicase RecG 0.45 CSW01_01015 DNA helicase II 0.90 1
Agrobacterium fabrum C58 0.34 Atu1780 ATP-dependent DNA helicase 0.30 Atu2057 DNA helicase II 0.55 13
Rhizobium sp. OAE497 0.34 ABIE40_RS09300 ATP-dependent DNA helicase RecG 0.31 ABIE40_RS11670 UvrD-helicase domain-containing protein low > 107
Sinorhizobium meliloti 1021 0.33 SMc00228 ATP-dependent DNA helicase RecG 0.30 SMc01461 DNA helicase II protein 0.64 13
Phocaeicola vulgatus CL09T03C04 0.33 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG 0.29 HMPREF1058_RS03305 UvrD-helicase domain-containing protein 0.46 63
Magnetospirillum magneticum AMB-1 0.33 AMB_RS12400 ATP-dependent DNA helicase RecG 0.30 AMB_RS03725 DNA helicase II — —
Azospirillum sp. SherDot2 0.33 MPMX19_00951 ATP-dependent DNA helicase RecG 0.31 MPMX19_01610 ATP-dependent DNA helicase PcrA — —
Phocaeicola dorei CL03T12C01 0.33 ABI39_RS02470 ATP-dependent DNA helicase RecG 0.29 ABI39_RS17735 UvrD-helicase domain-containing protein — —
Synechococcus elongatus PCC 7942 0.33 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG 0.30 Synpcc7942_2168 pcrA ATP-dependent DNA helicase, Rep family — —
Azospirillum brasilense Sp245 0.33 AZOBR_RS09850 ATP-dependent DNA helicase RecG 0.32 AZOBR_RS12445 DNA helicase II 0.31 87
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG 0.29 HMPREF1078_RS03560 3'-5' exonuclease — —
Dinoroseobacter shibae DFL-12 0.32 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.30 Dshi_2483 UvrD/REP helicase (RefSeq) — —
Bacteroides stercoris CC31F 0.32 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG 0.27 HMPREF1181_RS16505 UvrD-helicase domain-containing protein low > 56
Bacteroides thetaiotaomicron VPI-5482 0.32 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) 0.29 BT0657 ATP-dependent DNA helicase (NCBI ptt file) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.32 Echvi_1162 ATP-dependent DNA helicase RecG 0.32 Echvi_0292 Superfamily I DNA and RNA helicases — —
Phaeobacter inhibens DSM 17395 0.32 PGA1_c14380 ATP-dependent DNA helicase RecG 0.31 PGA1_c09450 DNA helicase II UvrD 0.47 10
Pontibacter actiniarum KMM 6156, DSM 19842 0.32 CA264_15020 DNA helicase RecG 0.31 CA264_07795 ATP-dependent DNA helicase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS04765 ATP-dependent DNA helicase RecG 0.30 A4249_RS04960 UvrD-helicase domain-containing protein low > 48
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS17240 ATP-dependent DNA helicase RecG 0.30 ABZR88_RS07840 ATP-dependent helicase — —
Bosea sp. OAE506 0.31 ABIE41_RS15815 ATP-dependent DNA helicase RecG 0.30 ABIE41_RS12730 UvrD-helicase domain-containing protein 0.34 56
Fusobacterium nucleatum SB010 0.30 HUW76_01465 ATP-dependent DNA helicase RecG 0.28 HUW76_07175 UvrD-helicase domain-containing protein low > 35
Rhodospirillum rubrum S1H 0.30 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) 0.31 Rru_A1536 UvrD/REP helicase (NCBI) — —
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS22835 ATP-dependent DNA helicase RecG 0.30 CA265_RS12980 ATP-dependent DNA helicase — —
Mycobacterium tuberculosis H37Rv 0.25 Rv2973c Probable ATP-dependent DNA helicase RecG 0.32 Rv0949 Probable ATP-dependent DNA helicase II UvrD1 low > 58

Not shown: 5 genomes with orthologs for Dsui_0311 only; 4 genomes with orthologs for Dsui_1227 only