| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Dechlorosoma suillum PS | 1.0 | Dsui_3401 | | putative Zn-dependent protease-like protein | 1.0 | Dsui_0707 | | protein RecA | 0.76 | 9 |
| Variovorax sp. SCN45 | 0.70 | GFF4449 | | TldD protein, part of TldE/TldD proteolytic complex | 0.75 | GFF5390 | | RecA protein | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.70 | GFF580 | | TldD protein, part of TldE/TldD proteolytic complex | 0.73 | GFF2500 | | RecA protein | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.70 | Ac3H11_4036 | | TldD protein, part of TldE/TldD proteolytic complex | 0.75 | Ac3H11_1255 | | RecA protein | — | — |
| Burkholderia phytofirmans PsJN | 0.69 | BPHYT_RS03540 | | peptidase C69 | 0.79 | BPHYT_RS16360 | | recombinase RecA | — | — |
| Variovorax sp. OAS795 | 0.69 | ABID97_RS06335 | | metalloprotease TldD | 0.75 | ABID97_RS02275 | | recombinase RecA | 0.54 | 24 |
| Paraburkholderia graminis OAS925 | 0.69 | ABIE53_000851 | | TldD protein | 0.79 | ABIE53_003448 | | recombination protein RecA | 0.35 | 48 |
| Cupriavidus basilensis FW507-4G11 | 0.69 | RR42_RS05875 | | protease TldD | 0.78 | RR42_RS03080 | | recombinase RecA | low | > 128 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.69 | H281DRAFT_04688 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | 0.79 | H281DRAFT_04208 | | RecA protein | low | > 103 |
| Ralstonia solanacearum GMI1000 | 0.68 | RS_RS13315 | | metalloprotease TldD | 0.75 | RS_RS02760 | | DNA recombination/repair protein RecA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.68 | RALBFv3_RS05455 | | metalloprotease TldD | 0.75 | RALBFv3_RS12010 | | recombinase RecA | low | > 76 |
| Ralstonia solanacearum UW163 | 0.68 | UW163_RS08170 | | metalloprotease TldD | 0.75 | UW163_RS01625 | | recombinase RecA | — | — |
| Herbaspirillum seropedicae SmR1 | 0.68 | HSERO_RS07155 | | peptidase C69 | 0.74 | HSERO_RS03270 | | protein RecA | low | > 78 |
| Paraburkholderia sabiae LMG 24235 | 0.68 | QEN71_RS26555 | | metalloprotease TldD | 0.81 | QEN71_RS02335 | | recombinase RecA | — | — |
| Ralstonia solanacearum PSI07 | 0.68 | RPSI07_RS11850 | | metalloprotease TldD | 0.75 | RPSI07_RS21260 | | recombinase RecA | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.67 | ABZR87_RS01105 | | metalloprotease TldD | 0.75 | ABZR87_RS07965 | | recombinase RecA | low | > 80 |
| Castellaniella sp019104865 MT123 | 0.67 | ABCV34_RS02590 | | metalloprotease TldD | 0.77 | ABCV34_RS04460 | | recombinase RecA | low | > 48 |
| Dyella japonica UNC79MFTsu3.2 | 0.65 | ABZR86_RS21715 | | metalloprotease TldD | 0.78 | ABZR86_RS00660 | | recombinase RecA | low | > 74 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.63 | Xcc-8004.1883.1 | | TldD protein, part of TldE/TldD proteolytic complex | 0.74 | Xcc-8004.3111.1 | | RecA protein | — | — |
| Rhodanobacter sp. FW510-T8 | 0.62 | OKGIIK_10280 | tldD | metalloprotease TldD | 0.81 | OKGIIK_03740 | recA | recombinase RecA | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.62 | LRK55_RS03145 | | metalloprotease TldD | 0.81 | LRK55_RS14695 | | recombinase RecA | low | > 63 |
| Alteromonas macleodii MIT1002 | 0.62 | MIT1002_00227 | | protease TldD | 0.77 | MIT1002_00955 | | Recombinase A | low | > 70 |
| Rhodanobacter denitrificans FW104-10B01 | 0.62 | LRK54_RS03395 | | metalloprotease TldD | 0.81 | LRK54_RS14980 | | recombinase RecA | low | > 59 |
| Pseudomonas putida KT2440 | 0.61 | PP_0940 | | putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD | 0.75 | PP_1629 | | Protein RecA | low | > 96 |
| Shewanella sp. ANA-3 | 0.61 | Shewana3_3641 | | microcin-processing peptidase 2 (RefSeq) | 0.73 | Shewana3_1126 | recA | recombinase A (RefSeq) | low | > 73 |
| Lysobacter sp. OAE881 | 0.60 | ABIE51_RS06795 | | metalloprotease TldD | 0.74 | ABIE51_RS07800 | | recombinase RecA | low | > 62 |
| Shewanella loihica PV-4 | 0.60 | Shew_0410 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.71 | Shew_1215 | recA | recombinase A (RefSeq) | low | > 60 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.59 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | 0.74 | Psyr_1378 | | RecA protein | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.59 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | 0.74 | Psyr_1378 | | RecA protein | low | > 86 |
| Pantoea sp. MT58 | 0.59 | IAI47_02465 | | metalloprotease TldD | 0.72 | IAI47_04300 | | recombinase RecA | low | > 76 |
| Pseudomonas fluorescens GW456-L13 | 0.59 | PfGW456L13_5026 | | TldD protein, part of TldE/TldD proteolytic complex | 0.73 | PfGW456L13_4668 | | RecA protein | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.59 | AO353_05215 | | protease TldD | 0.73 | AO353_16805 | | recombinase RecA | low | > 101 |
| Pectobacterium carotovorum WPP14 | 0.59 | HER17_RS20140 | | metalloprotease TldD | 0.73 | HER17_RS05045 | | recombinase RecA | low | > 75 |
| Pseudomonas fluorescens FW300-N2C3 | 0.59 | AO356_07095 | | protease TldD | 0.73 | AO356_05670 | | recombinase RecA | low | > 104 |
| Shewanella oneidensis MR-1 | 0.59 | SO4091 | tldD | tldD protein (NCBI ptt file) | 0.74 | SO3430 | recA | recA protein (NCBI ptt file) | low | > 76 |
| Serratia liquefaciens MT49 | 0.59 | IAI46_22685 | | metalloprotease TldD | 0.72 | IAI46_03840 | | recombinase RecA | low | > 86 |
| Pseudomonas fluorescens FW300-N2E2 | 0.58 | Pf6N2E2_3280 | | TldD protein, part of TldE/TldD proteolytic complex | 0.73 | Pf6N2E2_2993 | | RecA protein | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.58 | Pf1N1B4_1092 | | TldD protein, part of TldE/TldD proteolytic complex | 0.73 | Pf1N1B4_3143 | | RecA protein | low | > 87 |
| Pseudomonas fluorescens SBW25-INTG | 0.58 | PFLU_RS04340 | | metalloprotease TldD | 0.74 | PFLU_RS05885 | | recombinase RecA | low | > 109 |
| Pseudomonas simiae WCS417 | 0.58 | PS417_04285 | | protease TldD | 0.74 | PS417_05815 | | recombinase RecA | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.58 | PFLU_RS04340 | | metalloprotease TldD | 0.74 | PFLU_RS05885 | | recombinase RecA | low | > 109 |
| Pseudomonas sp. S08-1 | 0.58 | OH686_08580 | | TldD protein, part of TldE/TldD proteolytic complex | 0.73 | OH686_18205 | | protein RecA | low | > 80 |
| Shewanella amazonensis SB2B | 0.58 | Sama_0474 | | TldD protein (RefSeq) | 0.71 | Sama_1046 | recA | recombinase A (RefSeq) | low | > 62 |
| Dickeya dadantii 3937 | 0.58 | DDA3937_RS01460 | | metalloprotease TldD | 0.73 | DDA3937_RS16245 | | recombinase RecA | low | > 74 |
| Dickeya dianthicola 67-19 | 0.58 | HGI48_RS01380 | | metalloprotease TldD | 0.72 | HGI48_RS16355 | | recombinase RecA | low | > 71 |
| Pseudomonas stutzeri RCH2 | 0.58 | Psest_3320 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.75 | Psest_2872 | | protein RecA | low | > 67 |
| Klebsiella michiganensis M5al | 0.57 | BWI76_RS25470 | | metalloprotease TldD | 0.73 | BWI76_RS22180 | | recombinase RecA | — | — |
| Pseudomonas sp. RS175 | 0.57 | PFR28_00161 | | Metalloprotease TldD | 0.73 | PFR28_00472 | | Protein RecA | low | > 88 |
| Dickeya dianthicola ME23 | 0.57 | DZA65_RS01440 | | metalloprotease TldD | 0.72 | DZA65_RS17450 | | recombinase RecA | — | — |
| Enterobacter sp. TBS_079 | 0.57 | MPMX20_04151 | | Metalloprotease TldD | 0.72 | MPMX20_03580 | | Protein RecA | low | > 85 |
| Escherichia coli ECRC101 | 0.57 | OKFHMN_17755 | tldD | metalloprotease TldD | 0.73 | OKFHMN_20705 | recA | recombinase RecA | — | — |
| Escherichia coli ECOR38 | 0.57 | HEPCGN_16620 | tldD | metalloprotease TldD | 0.73 | HEPCGN_19900 | recA | recombinase RecA | low | > 85 |
| Escherichia coli ECRC99 | 0.57 | KEDOAH_10395 | tldD | metalloprotease TldD | 0.73 | KEDOAH_07430 | recA | recombinase RecA | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.57 | GFF2140 | | TldD protein, part of TldE/TldD proteolytic complex | 0.73 | GFF4693 | | RecA protein | — | — |
| Escherichia coli ECRC62 | 0.57 | BNILDI_01980 | tldD | metalloprotease TldD | 0.73 | BNILDI_11105 | recA | recombinase RecA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.57 | OHPLBJKB_00460 | | Metalloprotease TldD | 0.73 | OHPLBJKB_01035 | | Protein RecA | low | > 73 |
| Escherichia coli ECRC101 | 0.57 | MCAODC_08275 | tldD | metalloprotease TldD | 0.73 | MCAODC_11230 | recA | recombinase RecA | — | — |
| Escherichia coli ECRC102 | 0.57 | NIAGMN_15515 | tldD | metalloprotease TldD | 0.73 | NIAGMN_18475 | recA | recombinase RecA | — | — |
| Escherichia coli ECRC98 | 0.57 | JDDGAC_21380 | tldD | metalloprotease TldD | 0.73 | JDDGAC_24370 | recA | recombinase RecA | — | — |
| Escherichia fergusonii Becca | 0.57 | EFB2_00586 | | Metalloprotease TldD | 0.73 | EFB2_01225 | | Protein RecA | low | > 86 |
| Escherichia coli BL21 | 0.57 | ECD_03104 | | putative peptidase | 0.73 | ECD_02549 | | DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor | low | > 60 |
| Escherichia coli ECOR27 | 0.57 | NOLOHH_09555 | tldD | metalloprotease TldD | 0.73 | NOLOHH_12545 | recA | recombinase RecA | — | — |
| Escherichia coli Nissle 1917 | 0.57 | ECOLIN_RS18595 | | metalloprotease TldD | 0.73 | ECOLIN_RS15060 | | recombinase RecA | — | — |
| Escherichia coli BW25113 | 0.57 | b3244 | tldD | predicted peptidase (NCBI) | 0.73 | b2699 | recA | recombinase A (NCBI) | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.57 | CSW01_02220 | | metalloprotease TldD | 0.73 | CSW01_02875 | | DNA recombination/repair protein RecA | low | > 62 |
| Enterobacter asburiae PDN3 | 0.57 | EX28DRAFT_3295 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.72 | EX28DRAFT_2785 | | protein RecA | — | — |
| Erwinia tracheiphila SCR3 | 0.57 | LU632_RS21420 | tldD | metalloprotease TldD | 0.73 | LU632_RS15735 | recA | recombinase RecA | low | > 74 |
| Rahnella sp. WP5 | 0.56 | EX31_RS12265 | | metalloprotease TldD | 0.72 | EX31_RS07800 | | recombinase RecA | low | > 89 |
| Kangiella aquimarina DSM 16071 | 0.56 | B158DRAFT_2072 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | 0.78 | B158DRAFT_1531 | | protein RecA | low | > 40 |
| Rhodospirillum rubrum S1H | 0.56 | Rru_A0567 | | Peptidase U62, modulator of DNA gyrase (NCBI) | 0.70 | Rru_A2819 | | RecA DNA recombination protein (NCBI) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.55 | AMB_RS21030 | | metalloprotease TldD | 0.72 | AMB_RS03205 | | DNA recombination/repair protein RecA | low | > 64 |
| Sphingomonas koreensis DSMZ 15582 | 0.54 | Ga0059261_2252 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.69 | Ga0059261_0204 | | protein RecA | low | > 68 |
| Azospirillum brasilense Sp245 | 0.54 | AZOBR_RS10600 | | peptidase C69 | 0.72 | AZOBR_RS11095 | | recombinase RecA | low | > 97 |
| Azospirillum sp. SherDot2 | 0.53 | MPMX19_00882 | | Metalloprotease TldD | 0.71 | MPMX19_00869 | | Protein RecA | — | — |
| Rhizobium sp. OAE497 | 0.52 | ABIE40_RS04050 | | metalloprotease TldD | 0.71 | ABIE40_RS10320 | | recombinase RecA | low | > 107 |
| Caulobacter crescentus NA1000 Δfur | 0.51 | CCNA_03522 | | Zn-dependent protease TldD | 0.68 | CCNA_01141 | | RecA protein | — | — |
| Caulobacter crescentus NA1000 | 0.51 | CCNA_03522 | | Zn-dependent protease TldD | 0.68 | CCNA_01141 | | RecA protein | low | > 66 |
| Agrobacterium fabrum C58 | 0.51 | Atu0765 | | TldD | 0.71 | Atu1874 | | RecA protein | low | > 89 |
| Sinorhizobium meliloti 1021 | 0.51 | SMc00960 | | hypothetical protein | 0.70 | SMc00760 | | recombinase A | low | > 103 |
| Rhodopseudomonas palustris CGA009 | 0.50 | TX73_004255 | | metalloprotease TldD | 0.72 | TX73_019940 | | recombinase RecA | — | — |
| Dinoroseobacter shibae DFL-12 | 0.48 | Dshi_1139 | | peptidase U62 modulator of DNA gyrase (RefSeq) | 0.65 | Dshi_1643 | | recA protein (RefSeq) | low | > 64 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.48 | A4249_RS10860 | | metalloprotease TldD | 0.71 | A4249_RS12615 | | recombinase RecA | low | > 48 |
| Phaeobacter inhibens DSM 17395 | 0.47 | PGA1_c06240 | | protein TldD | 0.71 | PGA1_c15260 | | protein recA (recombinase A) | low | > 62 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.37 | BT3648 | | putative modulator of DNA gyrase (NCBI ptt file) | 0.62 | BT4610 | | RecA (NCBI ptt file) | low | > 81 |
| Parabacteroides merdae CL09T00C40 | 0.36 | HMPREF1078_RS03620 | | TldD/PmbA family protein | 0.63 | HMPREF1078_RS00095 | | recombinase RecA | low | > 61 |
| Bacteroides stercoris CC31F | 0.34 | HMPREF1181_RS03165 | | TldD/PmbA family protein | 0.63 | HMPREF1181_RS11910 | | recombinase RecA | low | > 56 |
| Synechococcus elongatus PCC 7942 | 0.23 | Synpcc7942_1127 | tldD | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | 0.58 | Synpcc7942_0348 | recA | recombinase A | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.09 | CA264_16655 | | TldD protein | 0.65 | CA264_19695 | | DNA recombination/repair protein RecA | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.09 | CA265_RS03855 | | TldD protein | 0.63 | CA265_RS00600 | | recombinase RecA | low | > 88 |
Not shown: 2 genomes with orthologs for Dsui_3401 only; 12 genomes with orthologs for Dsui_0707 only