Conservation of cofitness between CSW01_09445 and CSW01_13680 in Vibrio cholerae E7946 ATCC 55056

104 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09445 transcription-repair coupling factor 1.0 CSW01_13680 DNA helicase RecG 0.47 16
Rahnella sp. WP5 0.65 EX31_RS24520 transcription-repair coupling factor 0.67 EX31_RS15820 ATP-dependent DNA helicase RecG low > 89
Escherichia coli ECOR38 0.65 HEPCGN_24015 mfd transcription-repair coupling factor 0.68 HEPCGN_14365 recG ATP-dependent DNA helicase RecG low > 88
Serratia liquefaciens MT49 0.64 IAI46_10320 transcription-repair coupling factor 0.69 IAI46_24905 ATP-dependent DNA helicase RecG low > 87
Escherichia coli BW25113 0.64 b1114 mfd transcription-repair coupling factor (NCBI) 0.68 b3652 recG ATP-dependent DNA helicase (NCBI) 0.26 36
Escherichia fergusonii Becca 0.64 EFB2_02861 Transcription-repair-coupling factor 0.68 EFB2_00136 ATP-dependent DNA helicase RecG low > 86
Escherichia coli ECRC98 0.64 JDDGAC_07130 mfd transcription-repair coupling factor 0.69 JDDGAC_19170 recG ATP-dependent DNA helicase RecG low > 87
Escherichia coli ECRC100 0.64 OKFHMN_03470 mfd transcription-repair coupling factor 0.69 OKFHMN_15545 recG ATP-dependent DNA helicase RecG low > 79
Escherichia coli ECRC102 0.64 NIAGMN_24360 mfd transcription-repair coupling factor 0.69 NIAGMN_13305 recG ATP-dependent DNA helicase RecG low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_02552 Transcription-repair-coupling factor 0.68 OHPLBJKB_00049 ATP-dependent DNA helicase RecG low > 74
Escherichia coli ECRC99 0.64 KEDOAH_24285 mfd transcription-repair coupling factor 0.69 KEDOAH_12600 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC101 0.64 MCAODC_22830 mfd transcription-repair coupling factor 0.69 MCAODC_06055 recG ATP-dependent DNA helicase RecG low > 87
Escherichia coli BL21 0.64 ECD_01110 transcription-repair coupling factor 0.68 ECD_03509 ATP-dependent DNA helicase low > 61
Escherichia coli ECOR27 0.64 NOLOHH_20995 mfd transcription-repair coupling factor 0.68 NOLOHH_07425 recG ATP-dependent DNA helicase RecG low > 76
Escherichia coli ECRC62 0.64 BNILDI_19160 mfd transcription-repair coupling factor 0.68 BNILDI_04090 recG ATP-dependent DNA helicase RecG low > 75
Pectobacterium carotovorum WPP14 0.64 HER17_RS08775 transcription-repair coupling factor 0.68 HER17_RS21395 ATP-dependent DNA helicase RecG low > 75
Pantoea sp. MT58 0.64 IAI47_11975 transcription-repair coupling factor 0.70 IAI47_00500 ATP-dependent DNA helicase RecG low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF3397 Transcription-repair coupling factor 0.69 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 78
Enterobacter asburiae PDN3 0.64 EX28DRAFT_1816 transcription-repair coupling factor (mfd) 0.67 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 76
Klebsiella michiganensis M5al 0.64 BWI76_RS11205 transcription-repair coupling factor 0.68 BWI76_RS27440 DNA helicase RecG 0.33 85
Enterobacter sp. TBS_079 0.64 MPMX20_01795 Transcription-repair-coupling factor 0.68 MPMX20_00084 ATP-dependent DNA helicase RecG low > 85
Dickeya dadantii 3937 0.64 DDA3937_RS13000 transcription-repair coupling factor 0.69 DDA3937_RS00170 ATP-dependent DNA helicase RecG low > 74
Erwinia amylovora T8 0.64 OLJFJH_15445 transcription-repair coupling factor 0.69 OLJFJH_05550 ATP-dependent DNA helicase RecG low > 58
Pantoea agglomerans CFBP13505 P0401 0.64 PagCFBP13505_RS19410 transcription-repair coupling factor 0.70 PagCFBP13505_RS18845 ATP-dependent DNA helicase RecG low > 74
Dickeya dianthicola 67-19 0.64 HGI48_RS13065 transcription-repair coupling factor 0.68 HGI48_RS21190 ATP-dependent DNA helicase RecG low > 71
Dickeya dianthicola ME23 0.63 DZA65_RS13530 transcription-repair coupling factor 0.68 DZA65_RS22160 ATP-dependent DNA helicase RecG low > 75
Erwinia tracheiphila SCR3 0.63 LU632_RS14730 mfd transcription-repair coupling factor 0.67 LU632_RS22190 recG ATP-dependent DNA helicase RecG low > 73
Klebsiella pneumoniae MKP103 0.63 KDGMDA_18800 transcription-repair coupling factor 0.69 KDGMDA_08135 ATP-dependent DNA helicase RecG low > 95
Erwinia tracheiphila HP pepo 2.2 0.63 IJEDHG_00560 mfd transcription-repair coupling factor 0.67 IJEDHG_08345 recG ATP-dependent DNA helicase RecG low > 61
Shewanella loihica PV-4 0.58 Shew_1630 transcription-repair coupling factor (RefSeq) 0.65 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.57 MIT1002_01646 Transcription-repair-coupling factor 0.64 MIT1002_00111 ATP-dependent DNA helicase RecG low > 70
Shewanella oneidensis MR-1 0.56 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) 0.64 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.56 Shewana3_2289 transcription-repair coupling factor (RefSeq) 0.65 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) low > 73
Shewanella amazonensis SB2B 0.55 Sama_1330 transcription-repair coupling factor (RefSeq) 0.65 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) low > 62
Pseudomonas stutzeri RCH2 0.55 Psest_1653 transcription-repair coupling factor (mfd) 0.57 Psest_4192 ATP-dependent DNA helicase RecG — —
Pseudomonas aeruginosa PUPa3 0.55 DQ20_RS33625 mfd;go_function=nucleic transcription-repair coupling factor 0.55 DQ20_RS49510 recG;go_function=nucleic ATP-dependent DNA helicase RecG low > 101
Pseudomonas aeruginosa PA14 0.55 IKLFDK_15275 transcription-repair coupling factor 0.55 IKLFDK_26730 ATP-dependent DNA helicase RecG low > 98
Pseudomonas aeruginosa MRSN321 0.55 DY961_RS01955 mfd;go_function=nucleic transcription-repair coupling factor 0.55 DY961_RS12615 recG;go_function=nucleic ATP-dependent DNA helicase RecG low > 100
Pseudomonas sp. S08-1 0.55 OH686_21990 transcription-repair coupling factor 0.56 OH686_13505 ATP-dependent DNA helicase RecG low > 80
Pseudomonas sp. SVBP6 0.54 COO64_RS09460 mfd transcription-repair coupling factor 0.55 COO64_RS01595 recG ATP-dependent DNA helicase RecG low > 93
Pseudomonas segetis P6 0.54 MPMX49_01844 Transcription-repair-coupling factor 0.57 MPMX49_00040 ATP-dependent DNA helicase RecG low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_1896 transcription-repair coupling factor 0.55 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_1896 transcription-repair coupling factor 0.55 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Pseudomonas sp. BP01 0.54 JOY50_RS25100 mfd transcription-repair coupling factor 0.56 JOY50_RS08945 recG ATP-dependent DNA helicase RecG low > 84
Pseudomonas putida KT2440 0.54 PP_2148 transcription-repair coupling factor 0.56 PP_5310 junction-specific ATP-dependent DNA helicase low > 96
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_3916 Transcription-repair coupling factor 0.55 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_00435 transcription-repair coupling factor 0.55 AO353_09320 ATP-dependent DNA helicase RecG low > 101
Pseudomonas sp. RS175 0.54 PFR28_01123 Transcription-repair-coupling factor 0.55 PFR28_04435 ATP-dependent DNA helicase RecG low > 88
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_2278 Transcription-repair coupling factor 0.55 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 103
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_4027 Transcription-repair coupling factor 0.55 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 87
Pseudomonas simiae WCS417 0.53 PS417_07635 transcription-repair coupling factor 0.55 PS417_27870 ATP-dependent DNA helicase RecG 0.22 61
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_02270 transcription-repair coupling factor 0.55 AO356_12380 ATP-dependent DNA helicase RecG low > 104
Pseudomonas lactucae CFBP13502 0.53 GEMAOFIL_01659 Transcription-repair-coupling factor 0.55 GEMAOFIL_00042 ATP-dependent DNA helicase RecG low > 96
Pseudomonas fluorescens SBW25 0.53 PFLU_RS07710 transcription-repair coupling factor 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas sp. DMC3 0.53 GFF1285 Transcription-repair-coupling factor 0.55 GFF427 ATP-dependent DNA helicase RecG low > 89
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS07710 transcription-repair coupling factor 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas orientalis W4I3 0.53 QF045_RS10280 transcription-repair coupling factor 0.55 QF045_RS02225 ATP-dependent DNA helicase RecG low > 93
Marinobacter adhaerens HP15 0.52 HP15_2257 transcription-repair-coupling factor 0.55 HP15_309 DNA helicase, ATP-dependent, RecG 0.83 3
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_1800 transcription-repair coupling factor 0.49 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.67 34
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS02040 transcription-repair coupling factor 0.50 LRK54_RS11805 ATP-dependent DNA helicase RecG low > 59
Rhodanobacter denitrificans MT42 0.49 LRK55_RS01815 transcription-repair coupling factor 0.51 LRK55_RS11530 ATP-dependent DNA helicase RecG low > 63
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS21210 transcription-repair coupling factor 0.51 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.55 13
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_09105 mfd transcription-repair coupling factor 0.50 OKGIIK_12090 recG ATP-dependent DNA helicase RecG low > 53
Lysobacter sp. OAE881 0.49 ABIE51_RS14320 transcription-repair coupling factor 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG 0.60 15
Rhodanobacter sp000427505 FW510-R12 0.49 LRK53_RS08005 transcription-repair coupling factor 0.52 LRK53_RS16735 ATP-dependent DNA helicase RecG low > 59
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.1775.1 Transcription-repair coupling factor 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 74
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS13240 transcription-repair coupling factor 0.45 ABZR87_RS01270 ATP-dependent DNA helicase RecG low > 80
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS09290 helicase 0.44 BPHYT_RS03400 ATP-dependent DNA helicase RecG low > 109
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS22060 transcription-repair coupling factor 0.44 QEN71_RS26630 ATP-dependent DNA helicase RecG — —
Paraburkholderia graminis OAS925 0.47 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) 0.44 ABIE53_000833 ATP-dependent DNA helicase RecG low > 113
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_00880 transcription-repair coupling factor 0.44 H281DRAFT_04672 ATP-dependent DNA helicase RecG low > 103
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS15180 transcription-repair coupling factor 0.44 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.47 5
Ralstonia solanacearum UW163 0.46 UW163_RS14755 transcription-repair coupling factor 0.45 UW163_RS07950 DNA helicase RecG — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS01445 transcription-repair coupling factor 0.45 RALBFv3_RS05675 DNA helicase RecG low > 76
Ralstonia solanacearum GMI1000 0.46 RS_RS08275 transcription-repair coupling factor 0.45 RS_RS13565 DNA helicase RecG — —
Methylophilus sp. DMC18 0.46 GFF356 Transcription-repair-coupling factor 0.45 GFF2125 ATP-dependent DNA helicase RecG low > 43
Acinetobacter baumannii LAC-4 0.46 RR41_RS12305 transcription-repair coupling factor 0.52 RR41_RS02075 ATP-dependent DNA helicase RecG — —
Acinetobacter radioresistens SK82 0.45 MPMX26_01319 Transcription-repair-coupling factor 0.52 MPMX26_02732 ATP-dependent DNA helicase RecG low > 36
Ralstonia solanacearum PSI07 0.45 RPSI07_RS16040 transcription-repair coupling factor 0.45 RPSI07_RS11625 DNA helicase RecG low > 81
Hydrogenophaga sp. GW460-11-11-14-LB1 0.45 GFF4934 Transcription-repair coupling factor 0.40 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 90
Variovorax sp. OAS795 0.45 ABID97_RS17285 transcription-repair coupling factor 0.41 ABID97_RS01575 ATP-dependent DNA helicase RecG low > 91
Variovorax sp. SCN45 0.45 GFF412 Transcription-repair coupling factor 0.38 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) low > 127
Acidovorax sp. GW101-3H11 0.45 Ac3H11_328 Transcription-repair coupling factor 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 79
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS07845 transcription-repair coupling factor 0.45 RR42_RS17390 ATP-dependent DNA helicase RecG low > 128
Dechlorosoma suillum PS 0.44 Dsui_2385 transcription-repair coupling factor Mfd 0.42 Dsui_0311 ATP-dependent DNA helicase RecG 0.92 4
Castellaniella sp019104865 MT123 0.43 ABCV34_RS08660 transcription-repair coupling factor 0.41 ABCV34_RS03570 ATP-dependent DNA helicase RecG low > 48
Rhodopseudomonas palustris CGA009 0.33 TX73_013805 transcription-repair coupling factor 0.29 TX73_013795 ATP-dependent DNA helicase RecG low > 86
Xanthobacter sp. DMC5 0.33 GFF946 Transcription-repair-coupling factor 0.29 GFF630 ATP-dependent DNA helicase RecG — —
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_0960 transcription-repair coupling factor (mfd) 0.31 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 68
Rhodospirillum rubrum S1H 0.33 Rru_A1726 Transcription-repair coupling factor (NCBI) 0.29 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) — —
Magnetospirillum magneticum AMB-1 0.32 AMB_RS12390 transcription-repair coupling factor 0.34 AMB_RS12400 ATP-dependent DNA helicase RecG — —
Azospirillum sp. SherDot2 0.32 MPMX19_00876 Transcription-repair-coupling factor 0.34 MPMX19_00951 ATP-dependent DNA helicase RecG — —
Caulobacter crescentus NA1000 0.32 CCNA_01920 transcription-repair coupling factor Mfd 0.33 CCNA_01504 ATP-dependent DNA helicase recG 0.51 20
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_01920 transcription-repair coupling factor Mfd 0.33 CCNA_01504 ATP-dependent DNA helicase recG low > 67
Agrobacterium fabrum C58 0.32 Atu1778 transcription-repair coupling factor 0.33 Atu1780 ATP-dependent DNA helicase 0.53 4
Dinoroseobacter shibae DFL-12 0.32 Dshi_1561 transcription-repair coupling factor (RefSeq) 0.32 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.42 9
Sinorhizobium meliloti 1021 0.32 SMc04450 transcription-repair coupling factor 0.35 SMc00228 ATP-dependent DNA helicase RecG low > 103
Sphingobium sp. HT1-2 0.32 GFF3606 Transcription-repair coupling factor 0.33 GFF3604 ATP-dependent DNA helicase RecG (EC 3.6.4.12) low > 95
Bosea sp. OAE506 0.32 ABIE41_RS15825 transcription-repair coupling factor 0.31 ABIE41_RS15815 ATP-dependent DNA helicase RecG low > 77
Phaeobacter inhibens DSM 17395 0.31 PGA1_c14920 transcription-repair-coupling factor Mfd 0.32 PGA1_c14380 ATP-dependent DNA helicase RecG low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS04775 transcription-repair coupling factor 0.30 A4249_RS04765 ATP-dependent DNA helicase RecG low > 48
Rhizobium sp. OAE497 0.31 ABIE40_RS09310 transcription-repair coupling factor 0.34 ABIE40_RS09300 ATP-dependent DNA helicase RecG low > 107
Synechococcus elongatus PCC 7942 0.27 Synpcc7942_1326 mfd transcription-repair coupling factor 0.35 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_15820 transcription-repair coupling factor 0.31 CA264_15020 DNA helicase RecG 0.37 72
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS21070 transcription-repair coupling factor 0.30 CA265_RS22835 ATP-dependent DNA helicase RecG 0.29 26

Not shown: 4 genomes with orthologs for CSW01_09445 only; 12 genomes with orthologs for CSW01_13680 only