Conservation of cofitness between CSW01_05145 and CSW01_05920 in Vibrio cholerae E7946 ATCC 55056

102 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_05145 endonuclease III 1.0 CSW01_05920 dicarboxylate/amino acid:cation symporter 0.49 7
Enterobacter sp. TBS_079 0.85 MPMX20_02005 Endonuclease III 0.28 MPMX20_00292 Proton/glutamate-aspartate symporter low > 85
Shewanella amazonensis SB2B 0.85 Sama_1836 endonuclease III (RefSeq) 0.32 Sama_1319 symporter for L-glutamate, L-glutamine, and L-aspartate (from data) low > 62
Enterobacter asburiae PDN3 0.84 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.29 EX28DRAFT_4231 Na+/H+-dicarboxylate symporters 0.49 5
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.84 GFF3641 Endonuclease III (EC 4.2.99.18) 0.29 GFF1460 Glutamate-aspartate carrier protein low > 78
Pantoea sp. MT58 0.84 IAI47_10475 endonuclease III 0.30 IAI47_17710 glutamate/aspartate:proton symporter GltP low > 76
Pantoea agglomerans CFBP13505 P0401 0.84 PagCFBP13505_RS05655 endonuclease III 0.31 PagCFBP13505_RS21035 glutamate/aspartate:proton symporter GltP low > 74
Klebsiella pneumoniae MKP103 0.84 KDGMDA_23325 endonuclease III 0.28 KDGMDA_10570 glutamate/aspartate:proton symporter GltP low > 95
Escherichia coli ECRC62 0.84 BNILDI_16835 nth endonuclease III 0.29 BNILDI_06490 gltP glutamate/aspartate:proton symporter GltP low > 75
Escherichia coli ECOR38 0.84 HEPCGN_05910 nth endonuclease III 0.29 HEPCGN_11410 gltP glutamate/aspartate:proton symporter GltP low > 88
Escherichia coli ECOR27 0.84 NOLOHH_18045 nth endonuclease III 0.29 NOLOHH_05035 gltP glutamate/aspartate:proton symporter GltP — —
Escherichia coli Nissle 1917 0.84 ECOLIN_RS09110 endonuclease III 0.29 ECOLIN_RS23590 glutamate/aspartate:proton symporter GltP — —
Escherichia coli BL21 0.84 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) 0.29 ECD_03949 glutamate/aspartate:proton symporter — —
Escherichia coli BW25113 0.84 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) 0.29 b4077 gltP glutamate/aspartate:proton symporter (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.84 OHPLBJKB_02093 Endonuclease III 0.29 OHPLBJKB_03963 Proton/glutamate-aspartate symporter low > 74
Klebsiella michiganensis M5al 0.83 BWI76_RS16385 endonuclease III 0.28 BWI76_RS02105 glutamate/aspartate:proton symporter GltP — —
Escherichia fergusonii Becca 0.83 EFB2_02359 Endonuclease III 0.29 EFB2_04512 Proton/glutamate-aspartate symporter low > 86
Rahnella sp. WP5 0.83 EX31_RS06590 endonuclease III 0.23 EX31_RS05445 dicarboxylate/amino acid:cation symporter low > 89
Escherichia coli ECRC102 0.83 NIAGMN_00540 nth endonuclease III 0.29 NIAGMN_10630 gltP glutamate/aspartate:proton symporter GltP low > 80
Escherichia coli ECRC98 0.83 JDDGAC_02115 nth endonuclease III 0.29 JDDGAC_16420 gltP glutamate/aspartate:proton symporter GltP low > 87
Escherichia coli ECRC99 0.83 KEDOAH_00580 nth endonuclease III 0.29 KEDOAH_15365 gltP glutamate/aspartate:proton symporter GltP — —
Escherichia coli ECRC100 0.83 OKFHMN_27525 nth endonuclease III 0.29 OKFHMN_12785 gltP glutamate/aspartate:proton symporter GltP low > 79
Pectobacterium carotovorum WPP14 0.83 HER17_RS10860 endonuclease III 0.30 HER17_RS14145 glutamate/aspartate:proton symporter GltP low > 75
Escherichia coli ECRC101 0.83 MCAODC_17885 nth endonuclease III 0.29 MCAODC_03295 gltP glutamate/aspartate:proton symporter GltP low > 87
Dickeya dianthicola ME23 0.83 DZA65_RS11025 endonuclease III 0.29 DZA65_RS07875 glutamate/aspartate:proton symporter GltP low > 75
Serratia liquefaciens MT49 0.83 IAI46_11455 endonuclease III 0.30 IAI46_01410 glutamate/aspartate:proton symporter GltP low > 87
Shewanella loihica PV-4 0.82 Shew_2072 endonuclease III (RefSeq) 0.64 Shew_3625 sodium:dicarboxylate symporter (RefSeq) low > 60
Erwinia tracheiphila HP pepo 2.2 0.82 IJEDHG_25070 nth endonuclease III 0.29 IJEDHG_11300 gltP glutamate/aspartate:proton symporter GltP — —
Dickeya dadantii 3937 0.82 DDA3937_RS10545 endonuclease III 0.29 DDA3937_RS07490 glutamate/aspartate:proton symporter GltP low > 74
Erwinia amylovora T8 0.82 OLJFJH_14390 endonuclease III 0.30 OLJFJH_03330 glutamate/aspartate:proton symporter GltP low > 58
Dickeya dianthicola 67-19 0.82 HGI48_RS10545 endonuclease III 0.29 HGI48_RS07365 glutamate/aspartate:proton symporter GltP low > 71
Erwinia tracheiphila SCR3 0.82 LU632_RS11305 nth endonuclease III 0.29 LU632_RS23310 gltP glutamate/aspartate:proton symporter GltP low > 73
Shewanella oneidensis MR-1 0.80 SO2514 nth endonuclease III (NCBI ptt file) 0.67 SO0157 proton/glutamate symporter (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.79 Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) 0.66 Shewana3_0142 sodium:dicarboxylate symporter (RefSeq) low > 73
Marinobacter adhaerens HP15 0.77 HP15_1285 endonuclease III 0.27 HP15_2676 proton/sodium-glutamate symport protein low > 73
Herbaspirillum seropedicae SmR1 0.73 HSERO_RS08070 endonuclease IV 0.19 HSERO_RS13105 C4-dicarboxylate ABC transporter low > 78
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) 0.29 Pf6N2E2_4148 Glutamate-aspartate carrier protein low > 103
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18) 0.27 Pf1N1B4_1888 Glutamate-aspartate carrier protein low > 87
Kangiella aquimarina DSM 16071 0.72 B158DRAFT_2365 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.29 B158DRAFT_2215 Na+/H+-dicarboxylate symporters low > 40
Pseudomonas fluorescens SBW25 0.72 PFLU_RS05740 endonuclease III 0.30 PFLU_RS00460 glutamate/aspartate:proton symporter GltP low > 109
Pseudomonas lactucae CFBP13502 0.72 GEMAOFIL_01318 Endonuclease III 0.30 GEMAOFIL_00297 Proton/glutamate-aspartate symporter low > 96
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_1753 Endonuclease III (EC 4.2.99.18) 0.29 PfGW456L13_578 Glutamate-aspartate carrier protein low > 87
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS05740 endonuclease III 0.30 PFLU_RS00460 glutamate/aspartate:proton symporter GltP low > 109
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_04085 endonuclease III 0.29 AO353_10990 glutamate:protein symporter 0.25 37
Pseudomonas sp. DMC3 0.72 GFF5088 Endonuclease III 0.29 GFF617 Proton/glutamate-aspartate symporter low > 89
Pseudomonas sp. S08-1 0.72 OH686_03910 endonuclease III 0.22 OH686_20585 Na+/H+-dicarboxylate symporter low > 80
Acinetobacter baumannii LAC-4 0.72 RR41_RS09045 endonuclease III 0.29 RR41_RS16830 glutamate/aspartate:proton symporter GltP low > 55
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_18345 endonuclease III 0.29 AO356_11400 glutamate:protein symporter low > 104
Pseudomonas simiae WCS417 0.72 PS417_05655 endonuclease III 0.30 PS417_00470 glutamate:protein symporter low > 88
Pseudomonas syringae pv. syringae B728a 0.71 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.30 Psyr_0174 Sodium:dicarboxylate symporter low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.71 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.30 Psyr_0174 Sodium:dicarboxylate symporter low > 86
Pseudomonas sp. SVBP6 0.71 COO64_RS16885 nth endonuclease III 0.28 COO64_RS02545 gltP glutamate/aspartate:proton symporter GltP low > 93
Pseudomonas orientalis W4I3 0.71 QF045_RS08580 endonuclease III 0.30 QF045_RS03420 glutamate/aspartate:proton symporter GltP low > 93
Pseudomonas sp. RS175 0.71 PFR28_03349 Endonuclease III 0.29 PFR28_04638 Proton/glutamate-aspartate symporter 0.19 70
Pseudomonas aeruginosa MRSN321 0.71 DY961_RS15450 nth;go_function=DNA-(apurinic endonuclease III 0.30 DY961_RS25695 gltP;go_component=membrane|0016020||IEA;go_function=symporter glutamate/aspartate:proton symporter GltP low > 100
Pseudomonas aeruginosa PUPa3 0.71 DQ20_RS41610 nth;go_function=DNA-(apurinic endonuclease III 0.30 DQ20_RS58130 gltP;go_component=membrane|0016020||IEA;go_function=symporter glutamate/aspartate:proton symporter GltP low > 101
Pseudomonas aeruginosa PA14 0.71 IKLFDK_17935 endonuclease III 0.30 IKLFDK_26015 glutamate/aspartate:proton symporter GltP low > 98
Pseudomonas putida KT2440 0.70 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites 0.30 PP_0137 glutamate/aspartate-proton DAACS transporter low > 96
Pseudomonas segetis P6 0.70 ACVTMO_RS07195 nth endonuclease III 0.33 ACVTMO_RS00795 dicarboxylate/amino acid:cation symporter low > 75
Acinetobacter radioresistens SK82 0.70 MPMX26_02306 Endonuclease III 0.24 MPMX26_02728 Proton/glutamate-aspartate symporter low > 36
Pseudomonas stutzeri RCH2 0.70 Psest_3118 endonuclease III 0.32 Psest_4075 symporter for L-glutamate, L-glutamine, and L-proline (from data) low > 67
Pseudomonas sp. BP01 0.70 JOY50_RS23995 nth endonuclease III 0.29 JOY50_RS21035 gltP glutamate/aspartate:proton symporter GltP low > 84
Dyella japonica UNC79MFTsu3.2 0.70 ABZR86_RS08185 endonuclease III 0.25 ABZR86_RS00450 dicarboxylate/amino acid:cation symporter low > 74
Dechlorosoma suillum PS 0.70 Dsui_2985 endonuclease III 0.22 Dsui_3158 Na+/H+ dicarboxylate symporter low > 51
Ralstonia solanacearum PSI07 0.69 RPSI07_RS19265 endonuclease III 0.21 RPSI07_RS22530 dicarboxylate/amino acid:cation symporter low > 81
Xanthomonas campestris pv. campestris strain 8004 0.68 Xcc-8004.3350.1 Endonuclease III (EC 4.2.99.18) 0.23 Xcc-8004.1894.1 Proton/glutamate symport protein @ Sodium/glutamate symport protein low > 74
Ralstonia solanacearum GMI1000 0.68 RS_RS04975 endonuclease III 0.21 RS_RS01625 C4-dicarboxylate transporter 1 low > 80
Ralstonia solanacearum UW163 0.68 UW163_RS11660 endonuclease III 0.21 UW163_RS02795 dicarboxylate/amino acid:cation symporter — —
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS14195 endonuclease III 0.21 RALBFv3_RS10785 dicarboxylate/amino acid:cation symporter low > 76
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS09915 endonuclease III 0.20 ABZR87_RS06625 dicarboxylate/amino acid:cation symporter low > 80
Rhodanobacter denitrificans FW104-10B01 0.68 LRK54_RS01850 endonuclease III 0.19 LRK54_RS00700 dicarboxylate/amino acid:cation symporter low > 59
Rhodanobacter sp000427505 FW510-R12 0.68 LRK53_RS08200 endonuclease III 0.19 LRK53_RS09455 dicarboxylate/amino acid:cation symporter low > 59
Rhodanobacter denitrificans MT42 0.68 LRK55_RS01640 endonuclease III 0.19 LRK55_RS00475 dicarboxylate/amino acid:cation symporter low > 63
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS05970 endonuclease III 0.22 RR42_RS26105 C4-dicarboxylate transporter low > 128
Paraburkholderia bryophila 376MFSha3.1 0.67 H281DRAFT_00293 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III 0.20 H281DRAFT_02593 aerobic C4-dicarboxylate transport protein low > 103
Paraburkholderia graminis OAS925 0.67 ABIE53_001423 endonuclease-3 0.20 ABIE53_000979 aerobic C4-dicarboxylate transport protein low > 113
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS06080 endonuclease IV 0.19 BPHYT_RS16825 C4-dicarboxylate ABC transporter low > 109
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS24560 endonuclease III 0.21 QEN71_RS26995 C4-dicarboxylate transporter DctA low > 153
Rhodanobacter sp. FW510-T8 0.66 OKGIIK_04675 nth endonuclease III 0.19 OKGIIK_06560 gltP dicarboxylate/amino acid:cation symporter low > 53
Methylophilus sp. DMC18 0.65 GFF1728 Endonuclease III 0.23 GFF2299 Proton/sodium-glutamate symport protein low > 43
Lysobacter sp. OAE881 0.64 ABIE51_RS07560 endonuclease III 0.27 ABIE51_RS06350 dicarboxylate/amino acid:cation symporter low > 62
Variovorax sp. SCN45 0.63 GFF418 Endonuclease III (EC 4.2.99.18) 0.22 GFF1694 Na+/H+-dicarboxylate symporter low > 127
Variovorax sp. OAS795 0.62 ABID97_RS17315 endonuclease III 0.22 ABID97_RS26560 dicarboxylate/amino acid:cation symporter — —
Acidovorax sp. GW101-3H11 0.62 Ac3H11_1010 Endonuclease III (EC 4.2.99.18) 0.19 Ac3H11_719 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate low > 79
Azospirillum brasilense Sp245 0.62 AZOBR_RS01565 endonuclease III 0.22 AZOBR_RS21140 C4-dicarboxylate ABC transporter low > 97
Castellaniella sp019104865 MT123 0.61 ABCV34_RS08465 endonuclease III 0.20 ABCV34_RS02715 dicarboxylate/amino acid:cation symporter low > 48
Azospirillum sp. SherDot2 0.60 MPMX19_02500 Endonuclease III 0.23 MPMX19_04253 Aerobic C4-dicarboxylate transport protein low > 112
Sphingobium sp. HT1-2 0.59 GFF4040 Endonuclease III (EC 4.2.99.18) 0.27 GFF810 Proton/glutamate symporter @ Sodium/glutamate symporter low > 95
Sphingomonas koreensis DSMZ 15582 0.55 Ga0059261_2546 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.23 Ga0059261_3350 Na+/H+-dicarboxylate symporters low > 68
Rhodospirillum rubrum S1H 0.55 Rru_A0153 Endonuclease III/Nth (NCBI) 0.21 Rru_A1437 Sodium:dicarboxylate symporter (NCBI) low > 58
Brevundimonas sp. GW460-12-10-14-LB2 0.53 A4249_RS15000 endonuclease III 0.26 A4249_RS05595 dicarboxylate/amino acid:cation symporter low > 48
Caulobacter crescentus NA1000 0.53 CCNA_03847 endonuclease III 0.20 CCNA_00664 C4-dicarboxylate transport protein low > 66
Caulobacter crescentus NA1000 Δfur 0.53 CCNA_03847 endonuclease III 0.20 CCNA_00664 C4-dicarboxylate transport protein low > 67
Pontibacter actiniarum KMM 6156, DSM 19842 0.41 CA264_14955 endonuclease III 0.27 CA264_00335 dicarboxylate/amino acid:cation symporter low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.40 ABZR88_RS16725 endonuclease III 0.21 ABZR88_RS20325 C4-dicarboxylate transporter DctA low > 71
Parabacteroides merdae CL09T00C40 0.39 HMPREF1078_RS09755 endonuclease III 0.07 HMPREF1078_RS12825 dicarboxylate/amino acid:cation symporter low > 61
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS15245 endonuclease III 0.09 HMPREF1058_RS18020 dicarboxylate/amino acid:cation symporter low > 67
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS00605 endonuclease III 0.22 CA265_RS15560 glutamate/aspartate:proton symporter GltP low > 88
Echinicola vietnamensis KMM 6221, DSM 17526 0.38 Echvi_1263 endonuclease III 0.29 Echvi_1519 Na+/H+-dicarboxylate symporters low > 79
Bacteroides thetaiotaomicron VPI-5482 0.37 BT1671 endonuclease III (NCBI ptt file) 0.09 BT1223 Na+/H+-dicarboxylate symporter (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.37 BACOVA_04414 endonuclease III 0.10 BACOVA_00510 transporter, dicarboxylate/amino acid:cation Na+/H+ symporter family protein low > 96
Alteromonas macleodii MIT1002 0.32 MIT1002_01251 Endonuclease III 0.81 MIT1002_01542 Glutamate-aspartate carrier protein low > 70
Cellulophaga baltica 18 0.31 M666_RS13940 endonuclease III 0.27 M666_RS15550 dicarboxylate/amino acid:cation symporter low > 67

Not shown: 12 genomes with orthologs for CSW01_05145 only; 5 genomes with orthologs for CSW01_05920 only