Conservation of cofitness between CSW01_03510 and CSW01_03695 in Vibrio cholerae E7946 ATCC 55056

108 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03510 NADP(H)-dependent aldo-keto reductase 1.0 CSW01_03695 ribosomal large subunit pseudouridine synthase D 0.68 9
Serratia liquefaciens MT49 0.66 IAI46_20475 NADP(H)-dependent aldo-keto reductase 0.70 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Pantoea sp. MT58 0.65 IAI47_03895 NADP(H)-dependent aldo-keto reductase 0.70 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Shewanella loihica PV-4 0.65 Shew_0736 aldo/keto reductase (RefSeq) 0.60 Shew_2950 RluA family pseudouridine synthase (RefSeq) low > 60
Rahnella sp. WP5 0.65 EX31_RS13220 NADP(H)-dependent aldo-keto reductase 0.69 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 89
Pantoea agglomerans CFBP13505 P0401 0.65 PagCFBP13505_RS17075 NADP(H)-dependent aldo-keto reductase 0.70 PagCFBP13505_RS16540 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Dickeya dadantii 3937 0.65 DDA3937_RS04925 NADP(H)-dependent aldo-keto reductase 0.70 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Dickeya dianthicola 67-19 0.65 HGI48_RS04935 NADP(H)-dependent aldo-keto reductase 0.70 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 71
Dickeya dianthicola ME23 0.65 DZA65_RS05270 NADP(H)-dependent aldo-keto reductase 0.70 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Erwinia amylovora T8 0.65 OLJFJH_09025 NADP(H)-dependent aldo-keto reductase 0.70 OLJFJH_09725 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 58
Shewanella amazonensis SB2B 0.64 Sama_2776 aldo/keto reductase family oxidoreductase (RefSeq) 0.59 Sama_2605 pseudouridylate synthase (RefSeq) — —
Erwinia tracheiphila SCR3 0.64 LU632_RS06080 NADP(H)-dependent aldo-keto reductase 0.68 LU632_RS16945 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 73
Erwinia tracheiphila HP pepo 2.2 0.64 IJEDHG_17095 tas NADP(H)-dependent aldo-keto reductase 0.68 IJEDHG_26870 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 61
Pectobacterium carotovorum WPP14 0.64 HER17_RS16605 NADP(H)-dependent aldo-keto reductase 0.71 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Klebsiella pneumoniae MKP103 0.63 KDGMDA_03880 NADP(H)-dependent aldo-keto reductase 0.70 KDGMDA_02140 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 95
Klebsiella michiganensis M5al 0.62 BWI76_RS23305 NADP(H)-dependent aldo-keto reductase 0.69 BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase low > 92
Escherichia coli Nissle 1917 0.62 ECOLIN_RS15910 NADP(H)-dependent aldo-keto reductase 0.70 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 55
Escherichia coli ECOR38 0.62 HEPCGN_19535 tas NADP(H)-dependent aldo-keto reductase 0.70 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 88
Escherichia fergusonii Becca 0.62 EFB2_01049 Protein tas 0.70 EFB2_01296 Ribosomal large subunit pseudouridine synthase D low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.62 OHPLBJKB_00895 Protein tas 0.70 OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D low > 74
Escherichia coli BW25113 0.62 b2834 tas predicted oxidoreductase, NADP(H)-dependent aldo-keto reductase (NCBI) 0.70 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) — —
Escherichia coli BL21 0.62 ECD_02682 putative NADP(H)-dependent aldo-keto reductase 0.70 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase low > 61
Escherichia coli ECOR27 0.62 NOLOHH_11860 tas NADP(H)-dependent aldo-keto reductase 0.71 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Escherichia coli ECRC62 0.62 BNILDI_10340 tas NADP(H)-dependent aldo-keto reductase 0.71 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Shewanella sp. ANA-3 0.62 Shewana3_3379 aldo/keto reductase (RefSeq) 0.60 Shewana3_3171 ribosomal large subunit pseudouridine synthase D (RefSeq) low > 73
Escherichia coli ECRC102 0.62 NIAGMN_17745 tas NADP(H)-dependent aldo-keto reductase 0.70 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 80
Escherichia coli ECRC101 0.62 MCAODC_10500 tas NADP(H)-dependent aldo-keto reductase 0.70 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Escherichia coli ECRC99 0.62 KEDOAH_08155 tas NADP(H)-dependent aldo-keto reductase 0.70 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli ECRC98 0.62 JDDGAC_23640 tas NADP(H)-dependent aldo-keto reductase 0.70 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Escherichia coli ECRC100 0.62 OKFHMN_19975 tas NADP(H)-dependent aldo-keto reductase 0.70 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 79
Enterobacter asburiae PDN3 0.61 EX28DRAFT_2908 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 0.70 EX28DRAFT_2695 pseudouridine synthase, RluA family low > 76
Enterobacter sp. TBS_079 0.61 MPMX20_03696 Protein tas 0.70 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D low > 85
Marinobacter adhaerens HP15 0.59 HP15_740 oxidoreductase Tas, aldo/keto reductase family protein 0.51 HP15_527 pseudouridine synthase, RluA family low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF1317 Oxidoreductase, aldo/keto reductase family 0.70 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 78
Herbaspirillum seropedicae SmR1 0.57 HSERO_RS13630 aldo-keto reductase 0.35 HSERO_RS15070 ribosomal large subunit pseudouridine synthase D low > 78
Pseudomonas fluorescens GW456-L13 0.57 PfGW456L13_1631 Oxidoreductase, aldo/keto reductase family 0.54 PfGW456L13_1493 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Pseudomonas sp. RS175 0.57 PFR28_03609 Protein tas 0.54 PFR28_03748 Ribosomal large subunit pseudouridine synthase D low > 88
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_17050 aldo/keto reductase 0.55 AO356_15925 ribosomal large subunit pseudouridine synthase D 0.30 23
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_5334 Oxidoreductase, aldo/keto reductase family 0.54 Pf6N2E2_5127 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Pseudomonas sp. DMC3 0.56 GFF4440 Protein tas 0.54 GFF4004 Ribosomal large subunit pseudouridine synthase D low > 89
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_965 Oxidoreductase, aldo/keto reductase family 0.54 Pf1N1B4_2822 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Pseudomonas lactucae CFBP13502 0.56 GEMAOFIL_01033 Protein tas 0.54 GEMAOFIL_00969 Ribosomal large subunit pseudouridine synthase D low > 96
Pseudomonas orientalis W4I3 0.56 QF045_RS07140 NADP(H)-dependent aldo-keto reductase 0.54 QF045_RS06805 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 93
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_2296 Aldo/keto reductase 0.54 Psyr_0726 ribosomal large subunit pseudouridine synthase D low > 86
Pseudomonas simiae WCS417 0.56 PS417_04140 aldo/keto reductase 0.54 PS417_03820 ribosomal large subunit pseudouridine synthase D — —
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_2296 Aldo/keto reductase 0.54 Psyr_0726 ribosomal large subunit pseudouridine synthase D low > 86
Pseudomonas fluorescens SBW25 0.56 PFLU_RS04180 NADP(H)-dependent aldo-keto reductase 0.54 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 109
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS04180 NADP(H)-dependent aldo-keto reductase 0.54 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 109
Pseudomonas segetis P6 0.55 MPMX49_03831 Protein tas 0.53 MPMX49_03922 Ribosomal large subunit pseudouridine synthase D low > 75
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_15230 aldo/keto reductase 0.54 AO353_14220 ribosomal large subunit pseudouridine synthase D low > 101
Pseudomonas aeruginosa PA14 0.55 IKLFDK_01920 NADP(H)-dependent aldo-keto reductase 0.51 IKLFDK_00810 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 98
Pseudomonas sp. S08-1 0.55 OH686_08405 Tas protein, an NADP(H)-dependent aldo-keto reductase 0.53 OH686_16410 LSU rRNA pseudouridine(1911/1915/1917) synthase low > 80
Pseudomonas sp. BP01 0.55 JOY50_RS04515 NADP(H)-dependent aldo-keto reductase 0.54 JOY50_RS27130 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 84
Pseudomonas aeruginosa PUPa3 0.55 DQ20_RS56765 NADP(H)-dependent aldo-keto reductase 0.51 DQ20_RS56195 rluD;go_function=RNA 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 101
Pseudomonas aeruginosa MRSN321 0.55 DY961_RS24305 NADP(H)-dependent aldo-keto reductase 0.51 DY961_RS23730 rluD;go_function=RNA 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 100
Acinetobacter radioresistens SK82 0.55 MPMX26_01093 Protein tas 0.43 MPMX26_00735 Ribosomal large subunit pseudouridine synthase D low > 36
Pseudomonas putida KT2440 0.55 PP_1314 putative NAD(P)-linked reductase 0.53 PP_0623 23S rRNA pseudouridine(1911,1915,1917) synthase — —
Pseudomonas sp. SVBP6 0.54 COO64_RS11780 NADP(H)-dependent aldo-keto reductase 0.54 COO64_RS11055 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 93
Sphingobium sp. HT1-2 0.53 GFF3847 Tas protein, an NADP(H)-dependent aldo-keto reductase 0.37 GFF4062 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) low > 95
Acinetobacter baumannii LAC-4 0.52 RR41_RS10030 NADP(H)-dependent aldo-keto reductase 0.49 RR41_RS15070 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 55
Azospirillum sp. SherDot2 0.52 MPMX19_02594 Protein tas 0.33 MPMX19_05442 Ribosomal large subunit pseudouridine synthase D low > 112
Xanthobacter sp. DMC5 0.50 GFF3423 Protein tas 0.36 GFF2508 Ribosomal large subunit pseudouridine synthase D — —
Bosea sp. OAE506 0.50 ABIE41_RS04820 aldo/keto reductase 0.32 ABIE41_RS05635 RluA family pseudouridine synthase low > 77
Cellulophaga baltica 18 0.49 M666_RS03600 aldo/keto reductase 0.29 M666_RS09010 RluA family pseudouridine synthase low > 67
Caulobacter crescentus NA1000 Δfur 0.48 CCNA_03777 Tas protein 0.31 CCNA_00485 ribosomal large subunit pseudouridine synthase D low > 67
Caulobacter crescentus NA1000 0.48 CCNA_03777 Tas protein 0.31 CCNA_00485 ribosomal large subunit pseudouridine synthase D low > 66
Agrobacterium fabrum C58 0.48 Atu1093 aldo/keto reductase 0.33 Atu2443 ribosomal large subunit pseudouridine synthase, RluD subfamily — —
Rhizobium sp. OAE497 0.48 ABIE40_RS06350 aldo/keto reductase 0.36 ABIE40_RS14790 RluA family pseudouridine synthase low > 107
Sinorhizobium meliloti 1021 0.46 SMc00570 oxidoreductase 0.33 SMc00647 ribosomal large subunit pseudouridine synthase low > 103
Acidovorax sp. GW101-3H11 0.44 Ac3H11_2629 Oxidoreductase 0.32 Ac3H11_1787 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF287 Oxidoreductase 0.35 GFF4870 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 90
Methylophilus sp. DMC18 0.42 GFF1878 Protein tas 0.45 GFF1213 Ribosomal large subunit pseudouridine synthase D low > 43
Variovorax sp. SCN45 0.41 GFF3105 Tas protein, an NADP(H)-dependent aldo-keto reductase 0.30 GFF988 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) 0.70 16
Phaeobacter inhibens DSM 17395 0.41 PGA1_c08380 protein Tas 0.32 PGA1_c09000 ribosomal large subunit pseudouridine synthase D low > 62
Dinoroseobacter shibae DFL-12 0.40 Dshi_2823 aldo/keto reductase (RefSeq) 0.28 Dshi_2610 pseudouridine synthase, RluA family (RefSeq) low > 64
Alteromonas macleodii MIT1002 0.40 MIT1002_03519 L-glyceraldehyde 3-phosphate reductase 0.59 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D low > 70
Variovorax sp. OAS795 0.40 ABID97_RS21710 aldo/keto reductase 0.28 ABID97_RS14190 RluA family pseudouridine synthase low > 91
Dyella japonica UNC79MFTsu3.2 0.26 ABZR86_RS17730 aldo/keto reductase 0.48 ABZR86_RS10965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Rhodanobacter sp. FW510-T8 0.24 OKGIIK_16170 pdxI Pyridoxal reductase PdxI or related oxidoreductase, aldo/keto reductase family 0.46 OKGIIK_01790 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 53
Xanthomonas campestris pv. campestris strain 8004 0.23 Xcc-8004.348.1 Oxidoreductase 0.51 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.23 ABZR88_RS09880 aldo/keto reductase 0.29 ABZR88_RS03985 RluA family pseudouridine synthase low > 71
Rhodanobacter sp000427505 FW510-R12 0.23 LRK53_RS02685 aldo/keto reductase 0.47 LRK53_RS05045 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 59
Rhodanobacter denitrificans MT42 0.23 LRK55_RS09560 aldo/keto reductase 0.48 LRK55_RS04745 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 63
Echinicola vietnamensis KMM 6221, DSM 17526 0.22 Echvi_4511 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 0.31 Echvi_0642 pseudouridine synthase, RluA family low > 79
Rhodanobacter denitrificans FW104-10B01 0.22 LRK54_RS09920 aldo/keto reductase 0.48 LRK54_RS04965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 59
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS00675 aldo/keto reductase 0.29 A4249_RS10060 RluA family pseudouridine synthase low > 48
Pontibacter actiniarum KMM 6156, DSM 19842 0.21 CA264_00520 alcohol dehydrogenase 0.28 CA264_15205 RNA pseudouridine synthase low > 74
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_3340 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 0.32 Ga0059261_0664 pseudouridine synthase, RluA family low > 68
Rhodopseudomonas palustris CGA009 0.21 TX73_008500 aldo/keto reductase 0.33 TX73_001905 RluA family pseudouridine synthase low > 86
Ralstonia sp. UNC404CL21Col 0.21 ABZR87_RS20800 aldo/keto reductase 0.38 ABZR87_RS13315 RluA family pseudouridine synthase low > 80
Lysobacter sp. OAE881 0.21 ABIE51_RS00630 aldo/keto reductase 0.49 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 62
Pedobacter sp. GW460-11-11-14-LB5 0.21 CA265_RS14335 alcohol dehydrogenase 0.28 CA265_RS14415 pseudouridine synthase low > 88
Ralstonia solanacearum IBSBF1503 0.20 RALBFv3_RS17145 aldo/keto reductase 0.38 RALBFv3_RS01520 RluA family pseudouridine synthase low > 76
Ralstonia solanacearum GMI1000 0.20 RS_RS24225 aldo/keto reductase 0.39 RS_RS08205 RluA family pseudouridine synthase low > 80
Ralstonia solanacearum PSI07 0.19 RPSI07_RS06465 aldo/keto reductase 0.39 RPSI07_RS15970 RluA family pseudouridine synthase low > 81
Parabacteroides merdae CL09T00C40 0.16 HMPREF1078_RS09495 L-glyceraldehyde 3-phosphate reductase 0.28 HMPREF1078_RS12640 RluA family pseudouridine synthase low > 61
Bacteroides thetaiotaomicron VPI-5482 0.16 BT2679 putative ion-channel protein, putative oxidoreductase (NCBI ptt file) 0.31 BT3712 ribosomal large subunit pseudouridine synthase D (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS03645 aldo/keto reductase 0.31 HMPREF1181_RS03250 RluA family pseudouridine synthase low > 56
Bacteroides ovatus ATCC 8483 0.15 BACOVA_00975 oxidoreductase, aldo/keto reductase family protein 0.30 BACOVA_03528 pseudouridine synthase, RluA family low > 96
Phocaeicola dorei CL03T12C01 0.15 ABI39_RS07100 aldo/keto reductase 0.31 ABI39_RS02845 RluA family pseudouridine synthase low > 72
Rhodospirillum rubrum S1H 0.15 Rru_A1059 Aldo/keto reductase (NCBI) 0.35 Rru_A1111 Pseudouridine synthase, RluD (NCBI) low > 58
Phocaeicola vulgatus CL09T03C04 0.15 HMPREF1058_RS09580 aldo/keto reductase 0.31 HMPREF1058_RS08615 RluA family pseudouridine synthase low > 67
Magnetospirillum magneticum AMB-1 0.14 AMB_RS01300 aldo/keto reductase 0.30 AMB_RS16095 RluA family pseudouridine synthase low > 64
Synechocystis sp000284455 PCC 6803 0.13 SGL_RS16765 aldo/keto reductase 0.31 SGL_RS11530 RluA family pseudouridine synthase low > 52
Castellaniella sp019104865 MT123 0.13 ABCV34_RS02780 aldo/keto reductase 0.33 ABCV34_RS01885 RluA family pseudouridine synthase low > 48
Ralstonia solanacearum UW163 0.13 UW163_RS23080 aldo/keto reductase 0.38 UW163_RS14830 RluA family pseudouridine synthase — —
Mycobacterium tuberculosis H37Rv 0.13 Rv2298 Conserved protein 0.24 Rv1540 Conserved hypothetical protein member of yabO/yceC/yfiI family — —
Bifidobacterium breve UCC2003 0.12 BBR_RS12385 oxidoreductase 0.19 BBR_RS17135 RluA family pseudouridine synthase low > 34
Synechococcus elongatus PCC 7942 0.12 Synpcc7942_0026 hypothetical protein 0.29 Synpcc7942_1112 ribosomal large subunit pseudouridine synthase D low > 38

Not shown: 9 genomes with orthologs for CSW01_03510 only; 4 genomes with orthologs for CSW01_03695 only