Conservation of cofitness between CSW01_00290 and CSW01_03695 in Vibrio cholerae E7946 ATCC 55056

108 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00290 gamma carbonic anhydrase family protein 1.0 CSW01_03695 ribosomal large subunit pseudouridine synthase D 0.82 7
Shewanella amazonensis SB2B 0.70 Sama_0054 carbonic anhydrase (RefSeq) 0.59 Sama_2605 pseudouridylate synthase (RefSeq) — —
Pantoea agglomerans CFBP13505 P0401 0.69 PagCFBP13505_RS22570 gamma carbonic anhydrase family protein 0.70 PagCFBP13505_RS16540 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Shewanella sp. ANA-3 0.69 Shewana3_0045 carbonic anhydrase (RefSeq) 0.60 Shewana3_3171 ribosomal large subunit pseudouridine synthase D (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.68 MIT1002_00030 carnitine operon protein CaiE 0.59 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D 0.51 27
Pseudomonas sp. RS175 0.68 PFR28_04700 Protein YrdA 0.54 PFR28_03748 Ribosomal large subunit pseudouridine synthase D low > 88
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_4090 carbonic anhydrase, family 3 0.54 Pf6N2E2_5127 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_11115 anhydrase 0.55 AO356_15925 ribosomal large subunit pseudouridine synthase D low > 104
Shewanella loihica PV-4 0.67 Shew_3725 carbonic anhydrase (RefSeq) 0.60 Shew_2950 RluA family pseudouridine synthase (RefSeq) low > 60
Pseudomonas segetis P6 0.67 MPMX49_00360 Protein YrdA 0.53 MPMX49_03922 Ribosomal large subunit pseudouridine synthase D low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF2399 carbonic anhydrase, family 3 0.70 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 78
Pseudomonas aeruginosa PUPa3 0.67 DQ20_RS31165 gamma carbonic anhydrase family protein 0.51 DQ20_RS56195 rluD;go_function=RNA 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 101
Pseudomonas aeruginosa MRSN321 0.67 DY961_RS26595 gamma carbonic anhydrase family protein 0.51 DY961_RS23730 rluD;go_function=RNA 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 100
Pseudomonas fluorescens SBW25-INTG 0.67 PFLU_RS00235 gamma carbonic anhydrase family protein 0.54 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 109
Pseudomonas aeruginosa PA14 0.67 IKLFDK_25220 gamma carbonic anhydrase family protein 0.51 IKLFDK_00810 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 98
Klebsiella michiganensis M5al 0.67 BWI76_RS25635 gamma carbonic anhydrase family protein 0.69 BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase low > 92
Pseudomonas fluorescens SBW25 0.67 PFLU_RS00235 gamma carbonic anhydrase family protein 0.54 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 109
Pseudomonas fluorescens FW300-N2E3 0.67 AO353_10770 anhydrase 0.54 AO353_14220 ribosomal large subunit pseudouridine synthase D low > 101
Pseudomonas simiae WCS417 0.66 PS417_00240 anhydrase 0.54 PS417_03820 ribosomal large subunit pseudouridine synthase D — —
Pseudomonas fluorescens FW300-N1B4 0.66 Pf1N1B4_1843 carbonic anhydrase, family 3 0.54 Pf1N1B4_2822 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Enterobacter sp. TBS_079 0.66 MPMX20_04187 Protein YrdA 0.70 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D low > 85
Serratia liquefaciens MT49 0.66 IAI46_23235 gamma carbonic anhydrase family protein 0.70 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Rahnella sp. WP5 0.66 EX31_RS15945 gamma carbonic anhydrase family protein 0.69 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 89
Pseudomonas sp. DMC3 0.66 GFF664 Protein YrdA 0.54 GFF4004 Ribosomal large subunit pseudouridine synthase D low > 89
Pseudomonas lactucae CFBP13502 0.66 GEMAOFIL_00253 Protein YrdA 0.54 GEMAOFIL_00969 Ribosomal large subunit pseudouridine synthase D low > 96
Pseudomonas sp. SVBP6 0.66 COO64_RS02330 gamma carbonic anhydrase family protein 0.54 COO64_RS11055 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 93
Pseudomonas sp. S08-1 0.66 OH686_12365 Protein YrdA 0.53 OH686_16410 LSU rRNA pseudouridine(1911/1915/1917) synthase low > 80
Pseudomonas putida KT2440 0.66 PP_0095 putative enzyme of unknown function 0.53 PP_0623 23S rRNA pseudouridine(1911,1915,1917) synthase — —
Pseudomonas orientalis W4I3 0.65 QF045_RS03185 gamma carbonic anhydrase family protein 0.54 QF045_RS06805 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 93
Escherichia coli ECOR38 0.65 HEPCGN_16395 yrdA Protein YrdA 0.70 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 88
Escherichia coli ECOR27 0.65 NOLOHH_09365 yrdA Protein YrdA 0.71 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Pseudomonas fluorescens GW456-L13 0.65 PfGW456L13_625 carbonic anhydrase, family 3 0.54 PfGW456L13_1493 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Escherichia coli ECRC99 0.65 KEDOAH_10575 yrdA Protein YrdA 0.70 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli ECRC102 0.65 NIAGMN_15335 yrdA Protein YrdA 0.70 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 80
Escherichia coli ECRC100 0.65 OKFHMN_17575 yrdA Protein YrdA 0.70 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 79
Escherichia coli ECRC62 0.65 BNILDI_02155 yrdA Protein YrdA 0.71 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_00424 Protein YrdA 0.70 OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D low > 74
Escherichia coli ECRC98 0.65 JDDGAC_21195 yrdA Protein YrdA 0.70 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Escherichia coli ECRC101 0.65 MCAODC_08095 yrdA Protein YrdA 0.70 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Escherichia coli BW25113 0.65 b3279 yrdA putative transferase (VIMSS) 0.70 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) — —
Enterobacter asburiae PDN3 0.65 EX28DRAFT_0048 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 0.70 EX28DRAFT_2695 pseudouridine synthase, RluA family low > 76
Pseudomonas sp. BP01 0.65 JOY50_RS21250 gamma carbonic anhydrase family protein 0.54 JOY50_RS27130 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 84
Escherichia fergusonii Becca 0.65 EFB2_00544 Protein YrdA 0.70 EFB2_01296 Ribosomal large subunit pseudouridine synthase D low > 86
Escherichia coli Nissle 1917 0.65 ECOLIN_RS18830 gamma carbonic anhydrase family protein 0.70 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 55
Escherichia coli BL21 0.65 ECD_03130 bacterial transferase hexapeptide domain protein 0.70 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase low > 61
Pantoea sp. MT58 0.64 IAI47_02325 gamma carbonic anhydrase family protein 0.70 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Dickeya dadantii 3937 0.64 DDA3937_RS19090 gamma carbonic anhydrase family protein 0.70 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Klebsiella pneumoniae MKP103 0.64 KDGMDA_06505 gamma carbonic anhydrase family protein 0.70 KDGMDA_02140 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 95
Erwinia tracheiphila HP pepo 2.2 0.64 IJEDHG_12515 Gamma carbonic anhydrase family protein 0.68 IJEDHG_26870 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 61
Erwinia tracheiphila SCR3 0.64 LU632_RS22435 gamma carbonic anhydrase family protein 0.68 LU632_RS16945 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 73
Erwinia amylovora T8 0.63 OLJFJH_03675 gamma carbonic anhydrase family protein 0.70 OLJFJH_09725 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 58
Dickeya dianthicola ME23 0.63 DZA65_RS20305 gamma carbonic anhydrase family protein 0.70 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Dickeya dianthicola 67-19 0.63 HGI48_RS19180 gamma carbonic anhydrase family protein 0.70 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 71
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_0044 transferase hexapeptide repeat protein 0.54 Psyr_0726 ribosomal large subunit pseudouridine synthase D low > 86
Pectobacterium carotovorum WPP14 0.63 HER17_RS02260 gamma carbonic anhydrase family protein 0.71 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_0044 transferase hexapeptide repeat protein 0.54 Psyr_0726 ribosomal large subunit pseudouridine synthase D — —
Acinetobacter radioresistens SK82 0.59 MPMX26_01050 Protein YrdA 0.43 MPMX26_00735 Ribosomal large subunit pseudouridine synthase D low > 36
Marinobacter adhaerens HP15 0.58 HP15_3758 transferase hexapeptide repeat protein 0.51 HP15_527 pseudouridine synthase, RluA family low > 73
Acinetobacter baumannii LAC-4 0.56 RR41_RS05325 gamma carbonic anhydrase family protein 0.49 RR41_RS15070 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 55
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_0464 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 0.53 B158DRAFT_2532 Pseudouridylate synthases, 23S RNA-specific — —
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS14950 gamma carbonic anhydrase family protein 0.48 ABZR86_RS10965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Rhodanobacter sp000427505 FW510-R12 0.49 LRK53_RS02385 gamma carbonic anhydrase family protein 0.47 LRK53_RS05045 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 59
Acidovorax sp. GW101-3H11 0.49 Ac3H11_4230 carbonic anhydrase, family 3 0.32 Ac3H11_1787 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 79
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_15375 Carnitine operon protein CaiE 0.46 OKGIIK_01790 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 53
Rhodanobacter denitrificans MT42 0.48 LRK55_RS08375 gamma carbonic anhydrase family protein 0.48 LRK55_RS04745 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 63
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS08610 gamma carbonic anhydrase family protein 0.48 LRK54_RS04965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 59
Lysobacter sp. OAE881 0.47 ABIE51_RS01770 gamma carbonic anhydrase family protein 0.49 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 62
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.456.1 carbonic anhydrase, family 3 0.51 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 74
Rhodospirillum rubrum S1H 0.43 Rru_A2420 transferase hexapeptide repeat (NCBI) 0.35 Rru_A1111 Pseudouridine synthase, RluD (NCBI) low > 58
Azospirillum sp. SherDot2 0.42 MPMX19_03844 Protein YrdA 0.33 MPMX19_05442 Ribosomal large subunit pseudouridine synthase D low > 112
Magnetospirillum magneticum AMB-1 0.42 AMB_RS09070 gamma carbonic anhydrase family protein 0.30 AMB_RS16095 RluA family pseudouridine synthase low > 64
Mucilaginibacter yixingensis YX-36 DSM 26809 0.41 ABZR88_RS20625 gamma carbonic anhydrase family protein 0.29 ABZR88_RS03985 RluA family pseudouridine synthase low > 71
Pontibacter actiniarum KMM 6156, DSM 19842 0.41 CA264_14360 gamma carbonic anhydrase family protein 0.28 CA264_15205 RNA pseudouridine synthase low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.39 CA265_RS21190 gamma carbonic anhydrase family protein 0.28 CA265_RS14415 pseudouridine synthase low > 88
Sphingobium sp. HT1-2 0.39 GFF1600 Carbonic anhydrase, gamma class (EC 4.2.1.1) 0.37 GFF4062 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) low > 95
Variovorax sp. SCN45 0.39 GFF2764 Carbonic anhydrase-like protein MJ0304 0.30 GFF988 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) low > 127
Cellulophaga baltica 18 0.38 M666_RS07850 gamma carbonic anhydrase family protein 0.29 M666_RS09010 RluA family pseudouridine synthase low > 67
Variovorax sp. OAS795 0.37 ABID97_RS20225 gamma carbonic anhydrase family protein 0.28 ABID97_RS14190 RluA family pseudouridine synthase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.36 Echvi_2335 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 0.31 Echvi_0642 pseudouridine synthase, RluA family low > 79
Caulobacter crescentus NA1000 Δfur 0.36 CCNA_02726 gamma carbonic anhydrase family protein 0.31 CCNA_00485 ribosomal large subunit pseudouridine synthase D low > 67
Phocaeicola dorei CL03T12C01 0.36 ABI39_RS03850 gamma carbonic anhydrase family protein 0.31 ABI39_RS02845 RluA family pseudouridine synthase low > 72
Caulobacter crescentus NA1000 0.36 CCNA_02726 gamma carbonic anhydrase family protein 0.31 CCNA_00485 ribosomal large subunit pseudouridine synthase D low > 66
Sphingomonas koreensis DSMZ 15582 0.36 Ga0059261_0268 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 0.32 Ga0059261_0664 pseudouridine synthase, RluA family low > 68
Phocaeicola vulgatus CL09T03C04 0.36 HMPREF1058_RS09460 gamma carbonic anhydrase family protein 0.31 HMPREF1058_RS08615 RluA family pseudouridine synthase low > 67
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF5446 carbonic anhydrase, family 3 0.35 GFF4870 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Castellaniella sp019104865 MT123 0.35 ABCV34_RS13300 gamma carbonic anhydrase family protein 0.33 ABCV34_RS01885 RluA family pseudouridine synthase 0.35 47
Bacteroides thetaiotaomicron VPI-5482 0.35 BT2744 acetyltransferase (NCBI ptt file) 0.31 BT3712 ribosomal large subunit pseudouridine synthase D (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.34 BACOVA_01053 hexapeptide transferase family protein 0.30 BACOVA_03528 pseudouridine synthase, RluA family 0.57 7
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS08610 anhydrase 0.35 HSERO_RS15070 ribosomal large subunit pseudouridine synthase D low > 78
Parabacteroides merdae CL09T00C40 0.34 HMPREF1078_RS13110 gamma carbonic anhydrase family protein 0.28 HMPREF1078_RS12640 RluA family pseudouridine synthase low > 61
Bacteroides stercoris CC31F 0.34 HMPREF1181_RS00640 gamma carbonic anhydrase family protein 0.31 HMPREF1181_RS03250 RluA family pseudouridine synthase low > 56
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS10490 gamma carbonic anhydrase family protein 0.38 ABZR87_RS13315 RluA family pseudouridine synthase low > 80
Rhizobium sp. OAE497 0.34 ABIE40_RS10925 gamma carbonic anhydrase family protein 0.36 ABIE40_RS14790 RluA family pseudouridine synthase low > 107
Sinorhizobium meliloti 1021 0.33 SMc04241 acetyltransferase 0.33 SMc00647 ribosomal large subunit pseudouridine synthase low > 103
Phaeobacter inhibens DSM 17395 0.32 PGA1_c15820 putative phenylacetic acid degradation protein 0.32 PGA1_c09000 ribosomal large subunit pseudouridine synthase D low > 62
Rhodopseudomonas palustris CGA009 0.32 TX73_017715 gamma carbonic anhydrase family protein 0.33 TX73_001905 RluA family pseudouridine synthase 0.36 72
Ralstonia solanacearum PSI07 0.32 RPSI07_RS18530 gamma carbonic anhydrase family protein 0.39 RPSI07_RS15970 RluA family pseudouridine synthase low > 81
Dinoroseobacter shibae DFL-12 0.32 Dshi_1530 transferase hexapeptide repeat containing protein (RefSeq) 0.28 Dshi_2610 pseudouridine synthase, RluA family (RefSeq) low > 64
Ralstonia solanacearum UW163 0.31 UW163_RS12300 gamma carbonic anhydrase family protein 0.38 UW163_RS14830 RluA family pseudouridine synthase — —
Ralstonia solanacearum GMI1000 0.31 RS_RS05640 gamma carbonic anhydrase family protein 0.39 RS_RS08205 RluA family pseudouridine synthase low > 80
Ralstonia solanacearum IBSBF1503 0.31 RALBFv3_RS14830 gamma carbonic anhydrase family protein 0.38 RALBFv3_RS01520 RluA family pseudouridine synthase — —
Xanthobacter sp. DMC5 0.31 GFF4616 Protein YrdA 0.36 GFF2508 Ribosomal large subunit pseudouridine synthase D — —
Methanococcus maripaludis JJ 0.30 MMJJ_RS05190 gamma carbonic anhydrase family protein 0.25 MMJJ_RS09155 RluA family pseudouridine synthase low > 28
Methanococcus maripaludis S2 0.30 MMP_RS00295 gamma carbonic anhydrase family protein 0.24 MMP_RS05225 RluA family pseudouridine synthase low > 25
Brevundimonas sp. GW460-12-10-14-LB2 0.29 A4249_RS02210 gamma carbonic anhydrase family protein 0.29 A4249_RS10060 RluA family pseudouridine synthase low > 48
Synechococcus elongatus PCC 7942 0.29 Synpcc7942_1961 fbp ferripyochelin binding protein 0.29 Synpcc7942_1112 ribosomal large subunit pseudouridine synthase D low > 38
Agrobacterium fabrum C58 0.29 Atu1517 hypothetical protein 0.33 Atu2443 ribosomal large subunit pseudouridine synthase, RluD subfamily — —
Bosea sp. OAE506 0.27 ABIE41_RS14005 gamma carbonic anhydrase family protein 0.32 ABIE41_RS05635 RluA family pseudouridine synthase — —
Mycobacterium tuberculosis H37Rv 0.25 Rv3525c Possible siderophore-binding protein 0.24 Rv1540 Conserved hypothetical protein member of yabO/yceC/yfiI family — —

Not shown: 9 genomes with orthologs for CSW01_00290 only; 4 genomes with orthologs for CSW01_03695 only