Conservation of cofitness between CSW01_00280 and CSW01_01285 in Vibrio cholerae E7946 ATCC 55056

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00280 shikimate dehydrogenase 1.0 CSW01_01285 perosamine synthetase 0.81 11
Pseudomonas fluorescens FW300-N2E3 0.56 AO353_10670 shikimate dehydrogenase 0.25 AO353_25530 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase low > 101
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_0025 shikimate dehydrogenase 0.23 Psyr_2689 DegT/DnrJ/EryC1/StrS aminotransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_0025 shikimate dehydrogenase 0.23 Psyr_2689 DegT/DnrJ/EryC1/StrS aminotransferase low > 86
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.37 PfGW456L13_4375 perosamine synthetase low > 87
Pseudomonas sp. DMC3 0.55 GFF600 Shikimate dehydrogenase (NADP(+)) 0.21 GFF2433 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase
Pseudomonas orientalis W4I3 0.55 QF045_RS03060 shikimate dehydrogenase 0.21 QF045_RS01615 DegT/DnrJ/EryC1/StrS aminotransferase family protein
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.22 Pf1N1B4_3586 DegT/DnrJ/EryC1/StrS aminotransferase low > 87
Pseudomonas sp. RS175 0.55 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.23 PFR28_00919 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase
Pseudomonas simiae WCS417 0.54 PS417_00125 shikimate dehydrogenase 0.21 PS417_27245 aminotransferase DegT
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.23 Pf6N2E2_2610 Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase
Pseudomonas sp. SVBP6 0.53 COO64_RS02250 aroE shikimate dehydrogenase 0.22 COO64_RS21480 vioA dTDP-4-amino-4,6-dideoxy-D-glucose aminotransferase VioA
Pseudomonas lactucae CFBP13502 0.53 GEMAOFIL_00231 Shikimate dehydrogenase (NADP(+)) 0.21 GEMAOFIL_05587 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase
Pseudomonas stutzeri RCH2 0.53 Psest_0029 shikimate 5-dehydrogenase 0.22 Psest_1811 UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase
Pseudomonas sp. BP01 0.53 JOY50_RS08210 aroE shikimate dehydrogenase 0.22 JOY50_RS13135 DegT/DnrJ/EryC1/StrS aminotransferase family protein
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_11315 shikimate dehydrogenase 0.22 AO356_03965 aminotransferase low > 104
Shewanella loihica PV-4 0.53 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.20 Shew_1319 DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq) low > 60
Pseudomonas aeruginosa PA14 0.52 IKLFDK_25435 shikimate dehydrogenase 0.25 IKLFDK_18130 UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Pseudomonas aeruginosa MRSN321 0.52 DY961_RS26325 aroE;go_function=shikimate shikimate dehydrogenase 0.25 DY961_RS15250 arnB;go_function=transaminase UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Pseudomonas aeruginosa PUPa3 0.52 DQ20_RS58730 aroE;go_function=shikimate shikimate dehydrogenase 0.25 DQ20_RS41895 arnB;go_function=transaminase UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS01990 shikimate 5-dehydrogenase 0.27 HSERO_RS21000 aminotransferase DegT low > 78
Shewanella sp. ANA-3 0.51 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.23 Shewana3_1303 polysaccharide biosynthesis protein (RefSeq) low > 73
Dechlorosoma suillum PS 0.51 Dsui_0443 shikimate 5-dehydrogenase 0.23 Dsui_1769 putative PLP-dependent enzyme possibly involved in cell wall biogenesis
Marinobacter adhaerens HP15 0.50 HP15_3750 shikimate dehydrogenase 0.23 HP15_2398 aminotransferase, DegT/DnrJ/EryC1/StrS family
Enterobacter asburiae PDN3 0.50 EX28DRAFT_0046 shikimate dehydrogenase 0.24 EX28DRAFT_4082 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis low > 76
Pantoea agglomerans CFBP13505 P0401 0.50 PagCFBP13505_RS22560 shikimate dehydrogenase 0.25 PagCFBP13505_RS12240 UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Pantoea sp. MT58 0.50 IAI47_02315 shikimate dehydrogenase 0.25 IAI47_21625 UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Enterobacter sp. TBS_079 0.49 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.24 MPMX20_04380 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase low > 85
Shewanella amazonensis SB2B 0.49 Sama_0052 shikimate dehydrogenase (RefSeq) 0.27 Sama_2329 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis (RefSeq) low > 62
Escherichia coli Nissle 1917 0.48 ECOLIN_RS18840 shikimate dehydrogenase 0.22 ECOLIN_RS13125 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 55
Serratia liquefaciens MT49 0.48 IAI46_23240 shikimate dehydrogenase 0.25 IAI46_11015 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 87
Erwinia amylovora T8 0.48 OLJFJH_03685 shikimate dehydrogenase 0.24 OLJFJH_17365 UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Escherichia coli ECRC101 0.48 MCAODC_08085 aroE shikimate dehydrogenase 0.54 MCAODC_20510 rfbE GDP-perosamine synthase RfbE/PerA
Escherichia coli ECRC98 0.48 JDDGAC_21185 aroE shikimate dehydrogenase 0.54 JDDGAC_28540 rfbE GDP-perosamine synthase RfbE/PerA low > 87
Escherichia coli ECRC99 0.48 KEDOAH_10585 aroE shikimate dehydrogenase 0.54 KEDOAH_03720 rfbE GDP-perosamine synthase RfbE/PerA
Escherichia coli ECRC100 0.48 OKFHMN_17565 aroE shikimate dehydrogenase 0.54 OKFHMN_24430 rfbE GDP-perosamine synthase RfbE/PerA low > 79
Escherichia coli ECRC102 0.48 NIAGMN_15325 aroE shikimate dehydrogenase 0.54 NIAGMN_22375 rfbE GDP-perosamine synthase RfbE/PerA
Escherichia coli BW25113 0.48 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.22 b2253 arnB uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent (RefSeq) low > 76
Escherichia coli BL21 0.48 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.24 ECD_01942 VioA, involved in dTDP-N-acetylviosamine synthesis
Escherichia coli ECOR38 0.48 HEPCGN_16385 aroE shikimate dehydrogenase 0.24 HEPCGN_03130 vioA dTDP-4-amino-4,6-dideoxy-D-glucose aminotransferase VioA
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.22 OHPLBJKB_01458 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase low > 74
Escherichia coli ECOR27 0.48 NOLOHH_09355 aroE shikimate dehydrogenase 0.23 NOLOHH_14620 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 76
Escherichia coli ECRC62 0.48 BNILDI_02165 aroE shikimate dehydrogenase 0.22 BNILDI_13535 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 75
Erwinia tracheiphila SCR3 0.48 LU632_RS22445 aroE shikimate dehydrogenase 0.24 LU632_RS16495 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 73
Klebsiella pneumoniae MKP103 0.48 KDGMDA_06515 shikimate dehydrogenase 0.24 KDGMDA_07345 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 95
Erwinia tracheiphila HP pepo 2.2 0.47 IJEDHG_12505 aroE shikimate dehydrogenase 0.24 IJEDHG_02605 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 61
Klebsiella michiganensis M5al 0.47 BWI76_RS25645 shikimate dehydrogenase 0.23 BWI76_RS26485 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase low > 92
Rahnella sp. WP5 0.47 EX31_RS15950 shikimate dehydrogenase 0.24 EX31_RS14020 UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Escherichia fergusonii Becca 0.47 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.23 EFB2_01603 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.25 GFF1858 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC 2.6.1.-) low > 78
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS16975 shikimate 5-dehydrogenase 0.21 BPHYT_RS08930 aminotransferase DegT
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS27130 shikimate dehydrogenase 0.22 QEN71_RS29145 DegT/DnrJ/EryC1/StrS family aminotransferase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.22 H281DRAFT_00805 dTDP-4-amino-4,6-dideoxygalactose transaminase
Paraburkholderia graminis OAS925 0.45 ABIE53_003560 shikimate dehydrogenase 0.22 ABIE53_000145 dTDP-4-amino-4,6-dideoxygalactose transaminase
Pectobacterium carotovorum WPP14 0.44 HER17_RS02250 shikimate dehydrogenase 0.24 HER17_RS06520 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 75
Ralstonia solanacearum PSI07 0.44 RPSI07_RS11300 shikimate dehydrogenase 0.22 RPSI07_RS17515 DegT/DnrJ/EryC1/StrS aminotransferase family protein
Dickeya dianthicola ME23 0.43 DZA65_RS20315 shikimate dehydrogenase 0.25 DZA65_RS22610 UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Dickeya dianthicola 67-19 0.43 HGI48_RS19190 shikimate dehydrogenase 0.26 HGI48_RS21625 UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Dickeya dadantii 3937 0.43 DDA3937_RS19100 shikimate dehydrogenase 0.26 DDA3937_RS21390 UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS01605 shikimate dehydrogenase 0.36 ABZR87_RS22110 DegT/DnrJ/EryC1/StrS family aminotransferase low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.20 GFF1844 Aminotransferase low > 90
Methylophilus sp. DMC18 0.40 GFF2019 Shikimate dehydrogenase (NADP(+)) 0.22 GFF528 dTDP-3-amino-3,4,6-trideoxy-alpha-D-glucose transaminase
Castellaniella sp019104865 MT123 0.39 ABCV34_RS11620 shikimate dehydrogenase 0.22 ABCV34_RS12945 DegT/DnrJ/EryC1/StrS family aminotransferase
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS17645 shikimate dehydrogenase 0.25 RR42_RS15735 pyridoxal phosphate-dependent aminotransferase low > 128
Acinetobacter baumannii LAC-4 0.37 RR41_RS01995 shikimate dehydrogenase 0.24 RR41_RS18630 LegC family aminotransferase
Alteromonas macleodii MIT1002 0.36 MIT1002_00029 Shikimate dehydrogenase 0.22 MIT1002_01078 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS08595 shikimate dehydrogenase 0.21 LRK54_RS05160 DegT/DnrJ/EryC1/StrS family aminotransferase low > 59
Variovorax sp. SCN45 0.34 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.22 GFF6876 Aminotransferase, DegT/DnrJ/EryC1/StrS family low > 127
Rhodanobacter denitrificans MT42 0.34 LRK55_RS08360 shikimate dehydrogenase 0.21 LRK55_RS04940 DegT/DnrJ/EryC1/StrS family aminotransferase low > 63
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.22 Xcc-8004.2801.1 Aminotransferase, DegT/DnrJ/EryC1/StrS family low > 74
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS14985 shikimate dehydrogenase 0.18 ABZR86_RS18520 DegT/DnrJ/EryC1/StrS family aminotransferase low > 74
Variovorax sp. OAS795 0.32 ABID97_RS06300 shikimate dehydrogenase 0.24 ABID97_RS02145 DegT/DnrJ/EryC1/StrS family aminotransferase
Rhodanobacter sp000427505 FW510-R12 0.32 LRK53_RS02375 shikimate dehydrogenase 0.17 LRK53_RS00475 DegT/DnrJ/EryC1/StrS family aminotransferase low > 59
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_15365 aroE shikimate dehydrogenase 0.23 OKGIIK_10755 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase low > 53
Desulfovibrio vulgaris Hildenborough JW710 0.24 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.24 DVU3010 lpsC aminotransferase, DegT/DnrJ/EryC1/StrS family (TIGR)
Phaeobacter inhibens DSM 17395 0.23 PGA1_c35150 shikimate dehydrogenase AroE 0.22 PGA1_c05070 putative pyridoxal-phosphate-dependent aminotransferase
Azospirillum brasilense Sp245 0.21 AZOBR_RS01765 shikimate 5-dehydrogenase 0.21 AZOBR_RS33605 erythromycin biosynthesis sensory transduction protein eryC1
Methanococcus maripaludis S2 0.20 MMP_RS04855 shikimate dehydrogenase 0.33 MMP_RS01880 DegT/DnrJ/EryC1/StrS family aminotransferase
Rhodospirillum rubrum S1H 0.20 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.21 Rru_A2746 DegT/DnrJ/EryC1/StrS aminotransferase (NCBI)
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_00003 shikimate 5-dehydrogenase 0.41 CCNA_01064 perosamine synthetase low > 67
Caulobacter crescentus NA1000 0.19 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.41 CCNA_01064 perosamine synthetase low > 66
Desulfovibrio vulgaris Miyazaki F 0.18 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.21 DvMF_1891 Glutamine--scyllo-inositol transaminase (RefSeq)
Sphingomonas koreensis DSMZ 15582 0.17 Ga0059261_2194 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.20 Ga0059261_3110 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis
Synechocystis sp000284455 PCC 6803 0.17 SGL_RS17415 shikimate dehydrogenase 0.34 SGL_RS09505 DegT/DnrJ/EryC1/StrS family aminotransferase
Synechococcus elongatus PCC 7942 0.16 Synpcc7942_2467 aroE shikimate 5-dehydrogenase 0.34 Synpcc7942_0056 rfbE perosamine synthetase
Bosea sp. OAE506 0.16 ABIE41_RS04650 shikimate dehydrogenase 0.17 ABIE41_RS03045 dTDP-4-amino-4,6-dideoxygalactose transaminase
Magnetospirillum magneticum AMB-1 0.15 AMB_RS23010 shikimate dehydrogenase 0.28 AMB_RS00275 DegT/DnrJ/EryC1/StrS family aminotransferase
Brevundimonas sp. GW460-12-10-14-LB2 0.15 A4249_RS13660 shikimate dehydrogenase 0.19 A4249_RS13795 DegT/DnrJ/EryC1/StrS aminotransferase family protein
Fusobacterium nucleatum SB010 0.15 HUW76_10445 shikimate dehydrogenase 0.25 HUW76_01330 LegC family aminotransferase low > 35
Parabacteroides merdae CL09T00C40 0.13 HMPREF1078_RS14200 shikimate dehydrogenase 0.26 HMPREF1078_RS01585 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 61
Bacteroides thetaiotaomicron VPI-5482 0.12 BT4215 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.22 BT3376 nucleotide sugar transaminase (NCBI ptt file)
Bacteroides ovatus ATCC 8483 0.12 BACOVA_05065 putative shikimate dehydrogenase 0.20 BACOVA_03734 DegT/DnrJ/EryC1/StrS aminotransferase family protein low > 96
Mucilaginibacter yixingensis YX-36 DSM 26809 0.12 ABZR88_RS20055 shikimate dehydrogenase 0.28 ABZR88_RS12735 DegT/DnrJ/EryC1/StrS aminotransferase family protein
Bacteroides stercoris CC31F 0.12 HMPREF1181_RS06320 shikimate dehydrogenase 0.18 HMPREF1181_RS14960 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 56
Pontibacter actiniarum KMM 6156, DSM 19842 0.12 CA264_19075 shikimate dehydrogenase 0.30 CA264_12460 aminotransferase DegT
Echinicola vietnamensis KMM 6221, DSM 17526 0.11 Echvi_1145 Shikimate 5-dehydrogenase 0.24 Echvi_0062 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis
Phocaeicola dorei CL03T12C01 0.11 ABI39_RS12665 shikimate dehydrogenase 0.27 ABI39_RS13755 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 72
Phocaeicola vulgatus CL09T03C04 0.10 HMPREF1058_RS16750 shikimate dehydrogenase 0.20 HMPREF1058_RS03380 DegT/DnrJ/EryC1/StrS family aminotransferase low > 67
Pedobacter sp. GW460-11-11-14-LB5 0.10 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.35 CA265_RS01760 aminotransferase DegT

Not shown: 22 genomes with orthologs for CSW01_00280 only; 1 genomes with orthologs for CSW01_01285 only